diff --git a/docs/conf.py b/docs/conf.py index 596318a..ac3df0b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -193,4 +193,5 @@ "numpy": ('https://docs.scipy.org/doc/numpy', None), "scipy": ('https://docs.scipy.org/doc/scipy/reference/', None), "nanite": ('https://nanite.readthedocs.io/en/stable', None), + "afmformats": ('https://afmformats.readthedocs.io/en/stable', None), } diff --git a/docs/sec_getting_started.rst b/docs/sec_getting_started.rst index 5f6295f..d33f198 100644 --- a/docs/sec_getting_started.rst +++ b/docs/sec_getting_started.rst @@ -38,7 +38,14 @@ If you installed pyjibe with ``pip``, you may upgrade it with: pip install --upgrade pyjibe +Supported file formats +====================== +PyJibe relies on the :ref:`afmformats ` package. +A list of supported file formats can be found +:ref:`here `. + + How to cite ------------ +=========== If you use PyJibe in a scientific publication, please consider citing Müller et al., *BMC Bioinformatics* (2019) :cite:`Mueller19nanite`. diff --git a/setup.py b/setup.py index b660abe..ff94bc3 100644 --- a/setup.py +++ b/setup.py @@ -24,7 +24,7 @@ license="GPL v3", description=description, long_description=open('README.rst').read() if exists('README.rst') else '', - install_requires=["afmformats>=0.8.0", + install_requires=["afmformats>=0.9.0", "appdirs", "nanite>=1.4.1", "matplotlib",