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"no module named bioservices" #5

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kf-cuanschutz opened this issue May 2, 2024 · 0 comments
Open

"no module named bioservices" #5

kf-cuanschutz opened this issue May 2, 2024 · 0 comments

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@kf-cuanschutz
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kf-cuanschutz commented May 2, 2024

Hi,

I installed both 2023-actin-embedding and ProteinCartography following this guide: https://github.com/Arcadia-Science/2023-actin-embedding/tree/main

When running "1_prep_metadata.ipynb" I get the following error:

Traceback (most recent call last): File "./../../ProteinCartography/ProteinCartography/map_refseqids.py", line 8, in <module> from api_utils import ( File "/gpfs/alpine1/scratch/[email protected]/arcadia_project/ProteinCartography/ProteinCartography/api_utils.py", line 4, in <module> from bioservices import UniProt ModuleNotFoundError: No module named 'bioservices' Traceback (most recent call last): File "./../../ProteinCartography/ProteinCartography/map_refseqids.py", line 8, in <module> from api_utils import ( File "/gpfs/alpine1/scratch/[email protected]/arcadia_project/ProteinCartography/ProteinCartography/api_utils.py", line 4, in <module> from bioservices import UniProt ModuleNotFoundError: No module named 'bioservices' Traceback (most recent call last): File "./../../ProteinCartography/ProteinCartography/map_refseqids.py", line 8, in <module> from api_utils import ( File "/gpfs/alpine1/scratch/[email protected]/arcadia_project/ProteinCartography/ProteinCartography/api_utils.py", line 4, in <module> from bioservices import UniProt ModuleNotFoundError: No module named 'bioservices' Traceback (most recent call last): File "./../../ProteinCartography/ProteinCartography/map_refseqids.py", line 8, in <module> from api_utils import ( File "/gpfs/alpine1/scratch/[email protected]/arcadia_project/ProteinCartography/ProteinCartography/api_utils.py", line 4, in <module> from bioservices import UniProt ModuleNotFoundError: No module named 'bioservices'

Any idea?

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