DESCRIPTION

Package: ciRcus
Type: Package
Title: Annotation, analysis and visualization of circRNA data
Version: 0.1.6
Author: Petar Glazar [aut, cre], Vedran Franke [aut, cre], Marcel Schilling [aut, cre]
Maintainer: Petar Glazar <petar.glazar@gmail.com>, Vedran Franke
    <vedran.franke@gmail.com>, Marcel Schilling <marcel.schilling@mdc-berlin.de>
Description: A package for annotation, analysis and visualization of circRNA
    data. Users can annotate their circRNA candidates with host genes, gene featrues
    they are spliced from, and discriminate between known and yet unknown splice
    junctions. Circular-to-linear ratios of circRNAs can be calculated, and a number
    of descriptive plots easily generated.
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: Annotation, HighThroughputSequencing, Visualization
Depends:
    R (>= 3.0.0),
    methods
Imports:
    AnnotationDbi,
    AnnotationHub,
    biomaRt,
    BiocGenerics,
    data.table,
    DBI,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    ggplot2,
    hash,
    IRanges,
    RColorBrewer,
    RMySQL,
    rtracklayer,
    S4Vectors,
    stringr,
    SummarizedExperiment
Suggests:
    testthat,
    knitr,
    lintr
RoxygenNote: 6.1.0