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Add Recentrifuge to seek_and_destroy pipeline #163

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saramonzon opened this issue Oct 2, 2023 · 1 comment
Open

Add Recentrifuge to seek_and_destroy pipeline #163

saramonzon opened this issue Oct 2, 2023 · 1 comment

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@saramonzon
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@GuilleGorines
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GuilleGorines commented Oct 6, 2023

This request was made by a researcher regarding a service (some details have been censored due to data-privacy issues)

Buenas tardes
Para el servicio [SERVICE] me gustaría además de lo indicado, me preguntaba si se podría quitar el background de los controles negativos (indicados en la carrera con los siguientes nombres [SAMPLES NAME]. He visto en la literatura que esto se puede hacer con Recentrifuge (https://sites.google.com/view/recentrifuge) que funciona por comandos. Esto lo que hace es sustraer los reads de los controles negativos a los reads de las muestras de pacientes. De todas formas me gustaría mejor hablarlo en persona con vosotros para explicar lo que queremos hacer en este análisis bioinformático. Gracias [REQUESTER NAME]

@saramonzon saramonzon changed the title Add Recentrifuge to seek_and_destroy pipeline @GuilleGorines Add Recentrifuge to seek_and_destroy pipeline Feb 1, 2024
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