From cb1761a6f70c2d629cef2a75bb1934207b32b44a Mon Sep 17 00:00:00 2001 From: Haoyu <80379456+Haoyu-Gao@users.noreply.github.com> Date: Fri, 15 Nov 2024 17:13:32 +1100 Subject: [PATCH] Update README.md --- README.md | 102 +++++++++++++++++++++++++++++++++--------------------- 1 file changed, 62 insertions(+), 40 deletions(-) diff --git a/README.md b/README.md index caa137b8..f734aaff 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,4 @@ -OpenElis -======== +## OpenElis [![Build and Publish OpenELIS](https://github.com/Bahmni/OpenElis/actions/workflows/build_publish_openelis.yml/badge.svg)](https://github.com/Bahmni/OpenElis/actions/workflows/build_publish_openelis.yml) @@ -7,54 +6,77 @@ OpenElis [![Build and Publish OpenELIS Fresh DB](https://github.com/Bahmni/OpenElis/actions/workflows/build_publish_openelis_freshDB.yml/badge.svg)](https://github.com/Bahmni/OpenElis/actions/workflows/build_publish_openelis_freshDB.yml) -forked from OpenElis_v3.1_r2013_02_21 branch in svn +Forked from the `OpenElis_v3.1_r2013_02_21` branch in SVN. -*Requirements to build OpeneLIS* -* `java` version <= "1.7" -* `ant` version <= "1.9.1" -* `ruby` version == "3.1" and `gem install compass` +### Prerequisites -*To build OpenElis run* -* `ant dist` Creates OpenELIS War -* `ant setupDB test test-only dist` Creates clinlims database in postgres, runs tests, and then creates OpenELIS War -* `./scripts/vagrant-deploy.sh` Create OpenELIS War and deploys it to your vagrant's tomcat -* `./scripts/vagrant-database.sh` Runs Liquibase migration script in your vagrant +This project requires specific versions of tools to build and run OpenElis: -## Bahmni OpenELIS (bahmni-lab) docker image -Docker images for [OpenELIS](https://hub.docker.com/r/bahmni/openelis/tags) and it's [database](https://hub.docker.com/r/bahmni/openelis-db/tags) are built using [Github Actions](/.github/workflows). +- **Java**: Version ≤ 1.7 +- **Ant**: Version ≤ 1.9.1 +- **Ruby**: Version = 3.1 (also requires `gem install compass`) -Resources to build the following docker images can be found in the [package](/package) directory. -1. bahmni/openelis -2. bahmni/openelis-db:fresh -3. bahmni/openelis-db:demo +### Installation Steps -Transifex Configuration -=========================== -Transifex is a web based translation platform where one can do the translations and can be pulled into the codebase. -[Link](http://docs.transifex.com/client/config/#transifexrc) to setup the Transifex Client +#### Option 1: Manual Installation -* `tx pull -a` downloads the property files +Run the following commands to build OpenElis: -For more information please refer this [link](https://bahmni.atlassian.net/wiki/display/BAH/Translating+Bahmni) +1. To create the OpenELIS WAR file: + ```bash + ant dist + ``` +2. To set up the database, run tests, and create the WAR file: + ```bash + ant setupDB test test-only dist + ``` +3. To create and deploy to Vagrant's Tomcat: + ```bash + ./scripts/vagrant-deploy.sh + ``` +4. To run Liquibase migration script in Vagrant: + ```bash + ./scripts/vagrant-database.sh + ``` -Technical issues with the codebase -====================================== +### Docker Images -- Transaction and Hibernate session management -- Pagination handled via HttpSession -- Code duplication in various places (need examples here) - - ResultValidationPaging, ResultsPaging and AnalyzerResultsPaging. Same copy-pasted code with very minor difference. +Docker images for OpenElis and its database are built using GitHub Actions. -Functional changes made by us -============================= -- The order should contain the panel along with the tests. Hence making panel more than convenience tool for selecting multiple tests. -- AtomFeed based integration with OpenMRS and OpenERP -- REST endpoint for Patient, LabResults +- [bahmni/openelis](https://hub.docker.com/r/bahmni/openelis/tags) +- [bahmni/openelis-db:fresh](https://hub.docker.com/r/bahmni/openelis-db/tags) +- [bahmni/openelis-db:demo](https://hub.docker.com/r/bahmni/openelis-db/tags) -- Added functionality to validate test results by a particular accession number. Also you can see items to be validated across all test sections. +Resources for building these images can be found in the [package directory](/package). -Technical improvements -====================== -- Added ant buld -- Shortcircuited all calls to Session.clear +### Transifex Configuration + +Transifex is a web-based translation platform for managing translations. To set up the Transifex Client, follow the [documentation](http://docs.transifex.com/client/config/#transifexrc). + +- To pull property files: + ```bash + tx pull -a + ``` +Refer to the [Bahmni Translating Guide](https://bahmni.atlassian.net/wiki/display/BAH/Translating+Bahmni) for more details. + +### Functional Changes + +The following functional improvements have been made: + +- Orders now contain panels along with tests, making the panel more than a convenience tool for selecting multiple tests. +- Integration with OpenMRS and OpenERP using AtomFeed. +- Added REST endpoints for Patient and LabResults. +- Introduced functionality to validate test results by accession number, along with a view for items needing validation across sections. + +### Technical Improvements + +- Added Ant build support. +- Optimized calls to `Session.clear`. + +### Known Issues + +- Transaction and Hibernate session management challenges. +- Pagination handled via `HttpSession`. +- Code duplication in the following areas: + - ResultValidationPaging, ResultsPaging, and AnalyzerResultsPaging (same copy-pasted code with minor differences).