- To create the profiles:
snakemake -c{cores} --use-conda profile
. Training data (references.fasta
,config.yaml
andoutliers.txt
) should be located ininput/{name}/
. - To extract domain sequences:
snakemake -c{cores} --use-conda domain
. The fasta files with sequences to trim should be put inqueries/
and have.fasta
extension.