From c945dc63ddabdbcc7b0953afd8033d2b70d7fe1c Mon Sep 17 00:00:00 2001 From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com> Date: Thu, 21 Jul 2022 12:59:47 +0000 Subject: [PATCH] Release v0.1.1 (#19) --- CHANGELOG.md | 12 +++++++++++- Project.toml | 2 +- README.md | 4 ++-- docs/src/index.md | 4 ++-- 4 files changed, 16 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 802a674..53eff20 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.1.1] - 2022-07-21 + +### Added + +- Constructor for `Variant` based on `Variation`s ([#18](https://github.com/BioJulia/SequenceVariation.jl/pull/18)) + +## [0.1.0] - 2022-07-14 + ### Added - Mutation types (`Substitution`, `Deletion`, `Insertion`) @@ -16,4 +24,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - `Variant` constructor to automatically detect mutations from a `BioAlignments.PairwiseAlignment` - Methods to get reference and alternate bases from a `Variation` -[unreleased]: https://github.com/BioJulia/SequenceVariation.jl +[unreleased]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.1...HEAD +[0.1.1]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.0...v0.1.1 +[0.1.0]: https://github.com/BioJulia/SequenceVariation.jl/releases/tag/v0.1.0 diff --git a/Project.toml b/Project.toml index 16b268b..9f950f7 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "SequenceVariation" uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8" authors = ["Jakob Nybo Nissen ", "Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>"] -version = "0.1.0" +version = "0.1.1" [deps] BioAlignments = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e" diff --git a/README.md b/README.md index 1ed73b0..a69721f 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ You can install SequenceVariation from the [Julia REPL](https://docs.julialang.o Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following: ```julia -add https://github.com/SequenceVariation.jl +add SequenceVariation ``` ## Testing @@ -27,7 +27,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows. **Latest build status:** -[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster) +[![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml) [![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster) [![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl) diff --git a/docs/src/index.md b/docs/src/index.md index c454b95..f5eab75 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -18,7 +18,7 @@ You can install SequenceVariation from the [Julia REPL](https://docs.julialang.o Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following: ```julia -add https://github.com/SequenceVariation.jl +add SequenceVariation.jl ``` ## Testing @@ -27,7 +27,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows. **Latest build status:** -[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster) +[![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml) [![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster) [![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)