diff --git a/model-desc/c3dc-model-props.yml b/model-desc/c3dc-model-props.yml index 57d1557..6b4f3e0 100644 --- a/model-desc/c3dc-model-props.yml +++ b/model-desc/c3dc-model-props.yml @@ -1210,80 +1210,82 @@ PropDefinitions: - Origin: caDSR Code: '13299113' Value: Toronto Childhood Cancer Staging - Enum: - - "Acute lymphoblastic leukemia CNS1" - - "Acute lymphoblastic leukemia CNS2" - - "Acute lymphoblastic leukemia CNS3" - - "Astrocytomas Localized" - - "Astrocytomas Metastatic" - - "Ependymoma M0" - - "Ependymoma M1" - - "Ependymoma M2" - - "Ependymoma M3" - - "Ependymoma M4" - - "Hepatoblastoma Localized PRETEXT I" - - "Hepatoblastoma Localized PRETEXT II" - - "Hepatoblastoma Localized PRETEXT III" - - "Hepatoblastoma Localized PRETEXT IV" - - "Hepatoblastoma Metastatic PRETEXT I" - - "Hepatoblastoma Metastatic PRETEXT II" - - "Hepatoblastoma Metastatic PRETEXT III" - - "Hepatoblastoma Metastatic PRETEXT IV" - - "Hodgkin lymphoma Stage I" - - "Hodgkin lymphoma Stage II" - - "Hodgkin lymphoma Stage III" - - "Hodgkin lymphoma Stage IV" - - "Malignant bone tumor Localized" - - "Malignant bone tumor Metastatic" - - "Medulloblastoma M0" - - "Medulloblastoma M1" - - "Medulloblastoma M2" - - "Medulloblastoma M3" - - "Medulloblastoma M4" - - "Neuroblastoma Stage L1" - - "Neuroblastoma Stage L2" - - "Neuroblastoma Stage M" - - "Neuroblastoma Stage MS" - - "Non-Hodgkin lymphoma Stage I" - - "Non-Hodgkin lymphoma Stage II" - - "Non-Hodgkin lymphoma Stage III" - - "Non-Hodgkin lymphoma Stage IV" - - "Non-rhabdomyosarcoma soft tissue sarcoma Stage I" - - "Non-rhabdomyosarcoma soft tissue sarcoma Stage II" - - "Non-rhabdomyosarcoma soft tissue sarcoma Stage III" - - "Non-rhabdomyosarcoma soft tissue sarcoma Stage IV" - - "Ovarian germ cell tumor Stage I" - - "Ovarian germ cell tumor Stage II" - - "Ovarian germ cell tumor Stage III" - - "Ovarian germ cell tumor Stage IV" - - "Renal tumor (excluding renal cell carcinomas) Stage I" - - "Renal tumor (excluding renal cell carcinomas) Stage II" - - "Renal tumor (excluding renal cell carcinomas) Stage III" - - "Renal tumor (excluding renal cell carcinomas) Stage IV" - - "Renal tumor (excluding renal cell carcinomas) Stage y-I" - - "Renal tumor (excluding renal cell carcinomas) Stage y-II" - - "Renal tumor (excluding renal cell carcinomas) Stage y-III" - - "Retinoblastoma Stage 0" - - "Retinoblastoma Stage I" - - "Retinoblastoma Stage II" - - "Retinoblastoma Stage III" - - "Retinoblastoma Stage IV" - - "Rhabdomyosarcoma Stage I" - - "Rhabdomyosarcoma Stage II" - - "Rhabdomyosarcoma Stage III" - - "Rhabdomyosarcoma Stage IV" - - "Testicular germ cell tumor Stage I" - - "Testicular germ cell tumor Stage IA" - - "Testicular germ cell tumor Stage IB" - - "Testicular germ cell tumor Stage II" - - "Testicular germ cell tumor Stage IIA" - - "Testicular germ cell tumor Stage IIB" - - "Testicular germ cell tumor Stage IIC" - - "Testicular germ cell tumor Stage III" - - "Testicular germ cell tumor Stage IIIA" - - "Testicular germ cell tumor Stage IIIB" - - "Testicular germ cell tumor Stage IIIC" - - "Testicular germ cell tumor Stage IS" + Type: + value_type: list + Enum: + - "Acute lymphoblastic leukemia CNS1" + - "Acute lymphoblastic leukemia CNS2" + - "Acute lymphoblastic leukemia CNS3" + - "Astrocytomas Localized" + - "Astrocytomas Metastatic" + - "Ependymoma M0" + - "Ependymoma M1" + - "Ependymoma M2" + - "Ependymoma M3" + - "Ependymoma M4" + - "Hepatoblastoma Localized PRETEXT I" + - "Hepatoblastoma Localized PRETEXT II" + - "Hepatoblastoma Localized PRETEXT III" + - "Hepatoblastoma Localized PRETEXT IV" + - "Hepatoblastoma Metastatic PRETEXT I" + - "Hepatoblastoma Metastatic PRETEXT II" + - "Hepatoblastoma Metastatic PRETEXT III" + - "Hepatoblastoma Metastatic PRETEXT IV" + - "Hodgkin lymphoma Stage I" + - "Hodgkin lymphoma Stage II" + - "Hodgkin lymphoma Stage III" + - "Hodgkin lymphoma Stage IV" + - "Malignant bone tumor Localized" + - "Malignant bone tumor Metastatic" + - "Medulloblastoma M0" + - "Medulloblastoma M1" + - "Medulloblastoma M2" + - "Medulloblastoma M3" + - "Medulloblastoma M4" + - "Neuroblastoma Stage L1" + - "Neuroblastoma Stage L2" + - "Neuroblastoma Stage M" + - "Neuroblastoma Stage MS" + - "Non-Hodgkin lymphoma Stage I" + - "Non-Hodgkin lymphoma Stage II" + - "Non-Hodgkin lymphoma Stage III" + - "Non-Hodgkin lymphoma Stage IV" + - "Non-rhabdomyosarcoma soft tissue sarcoma Stage I" + - "Non-rhabdomyosarcoma soft tissue sarcoma Stage II" + - "Non-rhabdomyosarcoma soft tissue sarcoma Stage III" + - "Non-rhabdomyosarcoma soft tissue sarcoma Stage IV" + - "Ovarian germ cell tumor Stage I" + - "Ovarian germ cell tumor Stage II" + - "Ovarian germ cell tumor Stage III" + - "Ovarian germ cell tumor Stage IV" + - "Renal tumor (excluding renal cell carcinomas) Stage I" + - "Renal tumor (excluding renal cell carcinomas) Stage II" + - "Renal tumor (excluding renal cell carcinomas) Stage III" + - "Renal tumor (excluding renal cell carcinomas) Stage IV" + - "Renal tumor (excluding renal cell carcinomas) Stage y-I" + - "Renal tumor (excluding renal cell carcinomas) Stage y-II" + - "Renal tumor (excluding renal cell carcinomas) Stage y-III" + - "Retinoblastoma Stage 0" + - "Retinoblastoma Stage I" + - "Retinoblastoma Stage II" + - "Retinoblastoma Stage III" + - "Retinoblastoma Stage IV" + - "Rhabdomyosarcoma Stage I" + - "Rhabdomyosarcoma Stage II" + - "Rhabdomyosarcoma Stage III" + - "Rhabdomyosarcoma Stage IV" + - "Testicular germ cell tumor Stage I" + - "Testicular germ cell tumor Stage IA" + - "Testicular germ cell tumor Stage IB" + - "Testicular germ cell tumor Stage II" + - "Testicular germ cell tumor Stage IIA" + - "Testicular germ cell tumor Stage IIB" + - "Testicular germ cell tumor Stage IIC" + - "Testicular germ cell tumor Stage III" + - "Testicular germ cell tumor Stage IIIA" + - "Testicular germ cell tumor Stage IIIB" + - "Testicular germ cell tumor Stage IIIC" + - "Testicular germ cell tumor Stage IS" Req: false Strict: true Private: false @@ -1304,17 +1306,19 @@ PropDefinitions: - Origin: caDSR Code: '5424231' Value: Person Last Known Neoplasm Status - Enum: - - "Biochemical evidence of disease without structural correlate" - - "Distant met recurrence/progression" - - "Loco-regional recurrence/progression" - - "Never Tumor Free" - - "New Tumor Event (remission/relapse)" - - "Tumor free" - - "Tumor Free at Follow-up" - - "Unknown" - - "Unknown tumor status" - - "With tumor" + Type: + value_type: list + Enum: + - "Biochemical evidence of disease without structural correlate" + - "Distant met recurrence/progression" + - "Loco-regional recurrence/progression" + - "Never Tumor Free" + - "New Tumor Event (remission/relapse)" + - "Tumor free" + - "Tumor Free at Follow-up" + - "Unknown" + - "Unknown tumor status" + - "With tumor" Req: false Strict: true Private: false @@ -1346,13 +1350,15 @@ PropDefinitions: - Origin: caDSR Code: '7197400' Value: A grouping of topic-variable values based on sponsor defined characteristics. - Enum: - - "Adverse Event" - - "Last Known Disease Status" - - "Comorbidity" - - "Disease Event" - - "Disease Response" - - "Other" + Type: + value_type: list + Enum: + - "Adverse Event" + - "Last Known Disease Status" + - "Comorbidity" + - "Disease Event" + - "Disease Response" + - "Other" Req: true Private: false Key: false @@ -1411,58 +1417,60 @@ PropDefinitions: - Origin: caDSR Code: '7797710' #caDSR PVs are csv, bam, fastq, txt Value: Raw Data File Format - Enum: - - "bam" - - "bam_index" - - "bai" - - "bcf" - - "bed" - - "bif" - - "bw" - - "cns" - - "cram" - - "cram_index" - - "crai" - - "csi" - - "csv" - - "dicom" - - "docx" - - "fasta" - - "fastq" - - "gvcf" - - "html" - - "idat" - - "jpg" - - "json" - - "mrxs" - - "maf" - - "ndpi" - - "nifti" - - "pdf" - - "ped" - - "png" - - "py" - - "rda" - - "rdata" - - "rds" - - "sas7bdat" - - "scn" - - "seg" - - "svg" - - "svs" - - "tar" - - "tbi" - - "tsv" - - "tif" - - "tiff" - - "txt" - - "vcf" - - "vcf_index" - - "vms" - - "vmu" - - "xls" - - "xlsx" - - "xml" + Type: + value_type: list + Enum: + - "bam" + - "bam_index" + - "bai" + - "bcf" + - "bed" + - "bif" + - "bw" + - "cns" + - "cram" + - "cram_index" + - "crai" + - "csi" + - "csv" + - "dicom" + - "docx" + - "fasta" + - "fastq" + - "gvcf" + - "html" + - "idat" + - "jpg" + - "json" + - "mrxs" + - "maf" + - "ndpi" + - "nifti" + - "pdf" + - "ped" + - "png" + - "py" + - "rda" + - "rdata" + - "rds" + - "sas7bdat" + - "scn" + - "seg" + - "svg" + - "svs" + - "tar" + - "tbi" + - "tsv" + - "tif" + - "tiff" + - "txt" + - "vcf" + - "vcf_index" + - "vms" + - "vmu" + - "xls" + - "xlsx" + - "xml" Req: true Strict: true Private: false @@ -1474,11 +1482,13 @@ PropDefinitions: Private: false file_category: Desc: A freeform description of the file. - Enum: - - "programmatic source code" - - "transformation/mapping" - - "output schema" - - "input source data" + Type: + value_type: list + Enum: + - "programmatic source code" + - "transformation/mapping" + - "output schema" + - "input source data" Req: true Strict: true Private: false @@ -1590,16 +1600,18 @@ PropDefinitions: - Origin: caDSR Code: '2200604' Value: Person Gender Text Type - Enum: - - "Female" - - "Female Gender" - - "Intersex" - - "Male" - - "Male Gender" - - "Not Reported" - - "Not Specified" - - "Unknown" - - "Unspecified" + Type: + value_type: list + Enum: + - "Female" + - "Female Gender" + - "Intersex" + - "Male" + - "Male Gender" + - "Not Reported" + - "Not Specified" + - "Unknown" + - "Unspecified" Req: true Strict: true Private: false @@ -1665,351 +1677,353 @@ PropDefinitions: - Origin: caDSR Code: '11341616' Value: Disease Primary Anatomic Site ICD-O-3 Code - Enum: - - "Abdomen, NOS" - - "Abdominal esophagus" - - "Accessory sinus, NOS" - - "Acoustic nerve" - - "Adrenal gland, NOS" - - "Ampulla of Vater" - - "Anal canal" - - "Anterior 2/3 of tongue, NOS" - - "Anterior floor of mouth" - - "Anterior mediastinum" - - "Anterior surface of epiglottis" - - "Anterior wall of bladder" - - "Anterior wall of nasopharynx" - - "Anus, NOS" - - "Aortic body and other paraganglia" - - "Appendix" - - "Ascending colon" - - "Autonomic nervous system, NOS" - - "Axillary tail of breast" - - "Base of tongue, NOS" - - "Biliary tract, NOS" - - "Bladder neck" - - "Bladder, NOS" - - "Blood" - - "Body of pancreas" - - "Body of penis" - - "Body of stomach" - - "Bone marrow" - - "Bone of limb, NOS" - - "Bone, NOS" - - "Bones of skull and face and associated joints" - - "Border of tongue" - - "Brain stem" - - "Brain, NOS" - - "Branchial cleft" - - "Breast, NOS" - - "Broad ligament" - - "Buccal mucosa" - - "Cardia, NOS" - - "Carotid body" - - "Cauda equina" - - "Cecum" - - "Central portion of breast" - - "Cerebellum, NOS" - - "Cerebral meninges" - - "Cerebrospinal fluid" - - "Cerebrum" - - "Cervical esophagus" - - "Cervix uteri" - - "Cheek mucosa" - - "Chest wall, NOS" - - "Choroid" - - "Ciliary body" - - "Clitoris" - - "Cloacogenic zone" - - "Colon, NOS" - - "Commissure of lip" - - "Conjunctiva" - - "Connective, subcutaneous and other soft tissues of abdomen" - - "Connective, subcutaneous and other soft tissues of head, face, and neck" - - "Connective, subcutaneous and other soft tissues of lower limb and hip" - - "Connective, subcutaneous and other soft tissues of pelvis" - - "Connective, subcutaneous and other soft tissues of thorax" - - "Connective, subcutaneous and other soft tissues of trunk, NOS" - - "Connective, subcutaneous and other soft tissues of upper limb and shoulder" - - "Connective, subcutaneous and other soft tissues, NOS" - - "Cornea, NOS" - - "Corpus uteri" - - "Cortex of adrenal gland" - - "Cranial fossa, NOS" - - "Cranial nerve, NOS" - - "Craniopharyngeal duct" - - "Descended testis" - - "Descending colon" - - "Dome of bladder" - - "Dorsal surface of tongue, NOS" - - "Duodenum" - - "Endocervix" - - "Endocrine gland, NOS" - - "Endometrium" - - "Epididymis" - - "Esophagus, NOS" - - "Ethmoid sinus" - - "Exocervix" - - "External ear" - - "External lip, NOS" - - "External lower lip" - - "External upper lip" - - "Extrahepatic bile duct" - - "Eye, NOS" - - "Eyelid" - - "Fallopian tube" - - "Female genital tract, NOS" - - "Floor of mouth, NOS" - - "Foot, NOS" - - "Frontal lobe" - - "Frontal sinus" - - "Fundus of stomach" - - "Fundus uteri" - - "Gallbladder" - - "Gastric antrum" - - "Gastrointestinal tract, NOS" - - "Glans penis" - - "Glottis" - - "Greater curvature of stomach, NOS" - - "Gum, NOS" - - "Hand, NOS" - - "Hard palate" - - "Head of pancreas" - - "Head, face or neck, NOS" - - "Heart" - - "Hematopoietic system, NOS" - - "Hepatic flexure of colon" - - "Hypopharyngeal aspect of aryepiglottic fold" - - "Hypopharynx, NOS" - - "Ileum" - - "Ill-defined sites within respiratory system" - - "Intestinal tract, NOS" - - "Intra-abdominal lymph nodes" - - "Intrahepatic bile duct" - - "Intrathoracic lymph nodes" - - "Islets of Langerhans" - - "Isthmus uteri" - - "Jejunum" - - "Kidney, NOS" - - "Labium majus" - - "Labium minus" - - "Lacrimal gland" - - "Laryngeal cartilage" - - "Laryngeal commissure" - - "Larynx, NOS" - - "Lateral floor of mouth" - - "Lateral wall of bladder" - - "Lateral wall of nasopharynx" - - "Lateral wall of oropharynx" - - "Lesser curvature of stomach, NOS" - - "Lingual tonsil" - - "Lip, NOS" - - "Liver" - - "Long bones of lower limb and associated joints" - - "Long bones of upper limb, scapula and associated joints" - - "Lower gum" - - "Lower limb, NOS" - - "Lower lobe, lung" - - "Lower third of esophagus" - - "Lower-inner quadrant of breast" - - "Lower-outer quadrant of breast" - - "Lung, NOS" - - "Lymph node, NOS" - - "Lymph nodes of axilla or arm" - - "Lymph nodes of head, face and neck" - - "Lymph nodes of inguinal region or leg" - - "Lymph nodes of multiple regions" - - "Main bronchus" - - "Major salivary gland, NOS" - - "Male genital organs, NOS" - - "Mandible" - - "Maxillary sinus" - - "Meckel diverticulum" - - "Mediastinum, NOS" - - "Medulla of adrenal gland" - - "Meninges, NOS" - - "Middle ear" - - "Middle lobe, lung" - - "Middle third of esophagus" - - "Mouth, NOS" - - "Mucosa of lip, NOS" - - "Mucosa of lower lip" - - "Mucosa of upper lip" - - "Myometrium" - - "Nasal cavity" - - "Nasopharynx, NOS" - - "Nervous system, NOS" - - "Nipple" - - "Not Reported" - - "Occipital lobe" - - "Olfactory nerve" - - "Optic nerve" - - "Orbit, NOS" - - "Oropharynx, NOS" - - "Other ill-defined sites" - - "Other specified parts of female genital organs" - - "Other specified parts of male genital organs" - - "Other specified parts of pancreas" - - "Ovary" - - "Overlapping lesion of accessory sinuses" - - "Overlapping lesion of biliary tract" - - "Overlapping lesion of bladder" - - "Overlapping lesion of bones, joints and articular cartilage" - - "Overlapping lesion of bones, joints and articular cartilage of limbs" - - "Overlapping lesion of brain" - - "Overlapping lesion of brain and central nervous system" - - "Overlapping lesion of breast" - - "Overlapping lesion of cervix uteri" - - "Overlapping lesion of colon" - - "Overlapping lesion of connective, subcutaneous and other soft tissues" - - "Overlapping lesion of corpus uteri" - - "Overlapping lesion of digestive system" - - "Overlapping lesion of endocrine glands and related structures" - - "Overlapping lesion of esophagus" - - "Overlapping lesion of eye and adnexa" - - "Overlapping lesion of female genital organs" - - "Overlapping lesion of floor of mouth" - - "Overlapping lesion of heart, mediastinum and pleura" - - "Overlapping lesion of hypopharynx" - - "Overlapping lesion of ill-defined sites" - - "Overlapping lesion of larynx" - - "Overlapping lesion of lip" - - "Overlapping lesion of lip, oral cavity and pharynx" - - "Overlapping lesion of lung" - - "Overlapping lesion of major salivary glands" - - "Overlapping lesion of male genital organs" - - "Overlapping lesion of nasopharynx" - - "Overlapping lesion of other and unspecified parts of mouth" - - "Overlapping lesion of palate" - - "Overlapping lesion of pancreas" - - "Overlapping lesion of penis" - - "Overlapping lesion of peripheral nerves and autonomic nervous system" - - "Overlapping lesion of rectum, anus and anal canal" - - "Overlapping lesion of respiratory system and intrathoracic organs" - - "Overlapping lesion of retroperitoneum and peritoneum" - - "Overlapping lesion of skin" - - "Overlapping lesion of small intestine" - - "Overlapping lesion of stomach" - - "Overlapping lesion of tongue" - - "Overlapping lesion of tonsil" - - "Overlapping lesion of urinary organs" - - "Overlapping lesion of vulva" - - "Overlapping lesions of oropharynx" - - "Palate, NOS" - - "Pancreas, NOS" - - "Pancreatic duct" - - "Parametrium" - - "Parathyroid gland" - - "Paraurethral gland" - - "Parietal lobe" - - "Parotid gland" - - "Pelvic bones, sacrum, coccyx and associated joints" - - "Pelvic lymph nodes" - - "Pelvis, NOS" - - "Penis, NOS" - - "Perineum, NOS" - - "Peripheral nerves and autonomic nervous system of abdomen" - - "Peripheral nerves and autonomic nervous system of head, face, and neck" - - "Peripheral nerves and autonomic nervous system of lower limb and hip" - - "Peripheral nerves and autonomic nervous system of pelvis" - - "Peripheral nerves and autonomic nervous system of thorax" - - "Peripheral nerves and autonomic nervous system of trunk, NOS" - - "Peripheral nerves and autonomic nervous system of upper limb and shoulder" - - "Peritoneum, NOS" - - "Pharynx, NOS" - - "Pineal gland" - - "Pituitary gland" - - "Placenta" - - "Pleura, NOS" - - "Postcricoid region" - - "Posterior cranial fossa" - - "Posterior mediastinum" - - "Posterior wall of bladder" - - "Posterior wall of hypopharynx" - - "Posterior wall of nasopharynx" - - "Posterior wall of oropharynx" - - "Prepuce" - - "Prostate gland" - - "Pylorus" - - "Pyriform sinus" - - "Rectosigmoid junction" - - "Rectum, NOS" - - "Renal pelvis" - - "Reticuloendothelial system, NOS" - - "Retina" - - "Retromolar area" - - "Retroperitoneum" - - "Rib, sternum, clavicle and associated joints" - - "Round ligament" - - "Saliva" - - "Scrotum, NOS" - - "Short bones of lower limb and associated joints" - - "Short bones of upper limb and associated joints" - - "Sigmoid colon" - - "Skin of lip, NOS" - - "Skin of lower limb and hip" - - "Skin of other and unspecified parts of face" - - "Skin of scalp and neck" - - "Skin of trunk" - - "Skin of upper limb and shoulder" - - "Skin, NOS" - - "Small intestine, NOS" - - "Soft palate, NOS" - - "Specified parts of peritoneum" - - "Spermatic cord" - - "Sphenoid sinus" - - "Spinal cord" - - "Spinal meninges" - - "Spleen" - - "Splenic flexure of colon" - - "Stomach, NOS" - - "Subglottis" - - "Sublingual gland" - - "Submandibular gland" - - "Superior wall of nasopharynx" - - "Supraglottis" - - "Tail of pancreas" - - "Temporal lobe" - - "Testis, NOS" - - "Thigh, NOS" - - "Thoracic esophagus" - - "Thorax, NOS" - - "Thymus" - - "Thyroid gland" - - "Tibia" - - "Tongue, NOS" - - "Tonsil, NOS" - - "Tonsillar fossa" - - "Tonsillar pillar" - - "Trachea" - - "Transverse colon" - - "Trigone of bladder" - - "Undescended testis" - - "Unknown" - - "Unknown primary site" - - "Upper Gum" - - "Upper limb, NOS" - - "Upper lobe, lung" - - "Upper respiratory tract, NOS" - - "Upper third of esophagus" - - "Upper-inner quadrant of breast" - - "Upper-outer quadrant of breast" - - "Urachus" - - "Ureter" - - "Ureteric orifice" - - "Urethra" - - "Urinary system, NOS" - - "Uterine adnexa" - - "Uterus, NOS" - - "Uvula" - - "Vagina, NOS" - - "Vallecula" - - "Ventral surface of tongue, NOS" - - "Ventricle, NOS" - - "Vertebral column" - - "Vestibule of mouth" - - "Vulva, NOS" - - "Waldeyer ring" + Type: + value_type: list + Enum: + - "Abdomen, NOS" + - "Abdominal esophagus" + - "Accessory sinus, NOS" + - "Acoustic nerve" + - "Adrenal gland, NOS" + - "Ampulla of Vater" + - "Anal canal" + - "Anterior 2/3 of tongue, NOS" + - "Anterior floor of mouth" + - "Anterior mediastinum" + - "Anterior surface of epiglottis" + - "Anterior wall of bladder" + - "Anterior wall of nasopharynx" + - "Anus, NOS" + - "Aortic body and other paraganglia" + - "Appendix" + - "Ascending colon" + - "Autonomic nervous system, NOS" + - "Axillary tail of breast" + - "Base of tongue, NOS" + - "Biliary tract, NOS" + - "Bladder neck" + - "Bladder, NOS" + - "Blood" + - "Body of pancreas" + - "Body of penis" + - "Body of stomach" + - "Bone marrow" + - "Bone of limb, NOS" + - "Bone, NOS" + - "Bones of skull and face and associated joints" + - "Border of tongue" + - "Brain stem" + - "Brain, NOS" + - "Branchial cleft" + - "Breast, NOS" + - "Broad ligament" + - "Buccal mucosa" + - "Cardia, NOS" + - "Carotid body" + - "Cauda equina" + - "Cecum" + - "Central portion of breast" + - "Cerebellum, NOS" + - "Cerebral meninges" + - "Cerebrospinal fluid" + - "Cerebrum" + - "Cervical esophagus" + - "Cervix uteri" + - "Cheek mucosa" + - "Chest wall, NOS" + - "Choroid" + - "Ciliary body" + - "Clitoris" + - "Cloacogenic zone" + - "Colon, NOS" + - "Commissure of lip" + - "Conjunctiva" + - "Connective, subcutaneous and other soft tissues of abdomen" + - "Connective, subcutaneous and other soft tissues of head, face, and neck" + - "Connective, subcutaneous and other soft tissues of lower limb and hip" + - "Connective, subcutaneous and other soft tissues of pelvis" + - "Connective, subcutaneous and other soft tissues of thorax" + - "Connective, subcutaneous and other soft tissues of trunk, NOS" + - "Connective, subcutaneous and other soft tissues of upper limb and shoulder" + - "Connective, subcutaneous and other soft tissues, NOS" + - "Cornea, NOS" + - "Corpus uteri" + - "Cortex of adrenal gland" + - "Cranial fossa, NOS" + - "Cranial nerve, NOS" + - "Craniopharyngeal duct" + - "Descended testis" + - "Descending colon" + - "Dome of bladder" + - "Dorsal surface of tongue, NOS" + - "Duodenum" + - "Endocervix" + - "Endocrine gland, NOS" + - "Endometrium" + - "Epididymis" + - "Esophagus, NOS" + - "Ethmoid sinus" + - "Exocervix" + - "External ear" + - "External lip, NOS" + - "External lower lip" + - "External upper lip" + - "Extrahepatic bile duct" + - "Eye, NOS" + - "Eyelid" + - "Fallopian tube" + - "Female genital tract, NOS" + - "Floor of mouth, NOS" + - "Foot, NOS" + - "Frontal lobe" + - "Frontal sinus" + - "Fundus of stomach" + - "Fundus uteri" + - "Gallbladder" + - "Gastric antrum" + - "Gastrointestinal tract, NOS" + - "Glans penis" + - "Glottis" + - "Greater curvature of stomach, NOS" + - "Gum, NOS" + - "Hand, NOS" + - "Hard palate" + - "Head of pancreas" + - "Head, face or neck, NOS" + - "Heart" + - "Hematopoietic system, NOS" + - "Hepatic flexure of colon" + - "Hypopharyngeal aspect of aryepiglottic fold" + - "Hypopharynx, NOS" + - "Ileum" + - "Ill-defined sites within respiratory system" + - "Intestinal tract, NOS" + - "Intra-abdominal lymph nodes" + - "Intrahepatic bile duct" + - "Intrathoracic lymph nodes" + - "Islets of Langerhans" + - "Isthmus uteri" + - "Jejunum" + - "Kidney, NOS" + - "Labium majus" + - "Labium minus" + - "Lacrimal gland" + - "Laryngeal cartilage" + - "Laryngeal commissure" + - "Larynx, NOS" + - "Lateral floor of mouth" + - "Lateral wall of bladder" + - "Lateral wall of nasopharynx" + - "Lateral wall of oropharynx" + - "Lesser curvature of stomach, NOS" + - "Lingual tonsil" + - "Lip, NOS" + - "Liver" + - "Long bones of lower limb and associated joints" + - "Long bones of upper limb, scapula and associated joints" + - "Lower gum" + - "Lower limb, NOS" + - "Lower lobe, lung" + - "Lower third of esophagus" + - "Lower-inner quadrant of breast" + - "Lower-outer quadrant of breast" + - "Lung, NOS" + - "Lymph node, NOS" + - "Lymph nodes of axilla or arm" + - "Lymph nodes of head, face and neck" + - "Lymph nodes of inguinal region or leg" + - "Lymph nodes of multiple regions" + - "Main bronchus" + - "Major salivary gland, NOS" + - "Male genital organs, NOS" + - "Mandible" + - "Maxillary sinus" + - "Meckel diverticulum" + - "Mediastinum, NOS" + - "Medulla of adrenal gland" + - "Meninges, NOS" + - "Middle ear" + - "Middle lobe, lung" + - "Middle third of esophagus" + - "Mouth, NOS" + - "Mucosa of lip, NOS" + - "Mucosa of lower lip" + - "Mucosa of upper lip" + - "Myometrium" + - "Nasal cavity" + - "Nasopharynx, NOS" + - "Nervous system, NOS" + - "Nipple" + - "Not Reported" + - "Occipital lobe" + - "Olfactory nerve" + - "Optic nerve" + - "Orbit, NOS" + - "Oropharynx, NOS" + - "Other ill-defined sites" + - "Other specified parts of female genital organs" + - "Other specified parts of male genital organs" + - "Other specified parts of pancreas" + - "Ovary" + - "Overlapping lesion of accessory sinuses" + - "Overlapping lesion of biliary tract" + - "Overlapping lesion of bladder" + - "Overlapping lesion of bones, joints and articular cartilage" + - "Overlapping lesion of bones, joints and articular cartilage of limbs" + - "Overlapping lesion of brain" + - "Overlapping lesion of brain and central nervous system" + - "Overlapping lesion of breast" + - "Overlapping lesion of cervix uteri" + - "Overlapping lesion of colon" + - "Overlapping lesion of connective, subcutaneous and other soft tissues" + - "Overlapping lesion of corpus uteri" + - "Overlapping lesion of digestive system" + - "Overlapping lesion of endocrine glands and related structures" + - "Overlapping lesion of esophagus" + - "Overlapping lesion of eye and adnexa" + - "Overlapping lesion of female genital organs" + - "Overlapping lesion of floor of mouth" + - "Overlapping lesion of heart, mediastinum and pleura" + - "Overlapping lesion of hypopharynx" + - "Overlapping lesion of ill-defined sites" + - "Overlapping lesion of larynx" + - "Overlapping lesion of lip" + - "Overlapping lesion of lip, oral cavity and pharynx" + - "Overlapping lesion of lung" + - "Overlapping lesion of major salivary glands" + - "Overlapping lesion of male genital organs" + - "Overlapping lesion of nasopharynx" + - "Overlapping lesion of other and unspecified parts of mouth" + - "Overlapping lesion of palate" + - "Overlapping lesion of pancreas" + - "Overlapping lesion of penis" + - "Overlapping lesion of peripheral nerves and autonomic nervous system" + - "Overlapping lesion of rectum, anus and anal canal" + - "Overlapping lesion of respiratory system and intrathoracic organs" + - "Overlapping lesion of retroperitoneum and peritoneum" + - "Overlapping lesion of skin" + - "Overlapping lesion of small intestine" + - "Overlapping lesion of stomach" + - "Overlapping lesion of tongue" + - "Overlapping lesion of tonsil" + - "Overlapping lesion of urinary organs" + - "Overlapping lesion of vulva" + - "Overlapping lesions of oropharynx" + - "Palate, NOS" + - "Pancreas, NOS" + - "Pancreatic duct" + - "Parametrium" + - "Parathyroid gland" + - "Paraurethral gland" + - "Parietal lobe" + - "Parotid gland" + - "Pelvic bones, sacrum, coccyx and associated joints" + - "Pelvic lymph nodes" + - "Pelvis, NOS" + - "Penis, NOS" + - "Perineum, NOS" + - "Peripheral nerves and autonomic nervous system of abdomen" + - "Peripheral nerves and autonomic nervous system of head, face, and neck" + - "Peripheral nerves and autonomic nervous system of lower limb and hip" + - "Peripheral nerves and autonomic nervous system of pelvis" + - "Peripheral nerves and autonomic nervous system of thorax" + - "Peripheral nerves and autonomic nervous system of trunk, NOS" + - "Peripheral nerves and autonomic nervous system of upper limb and shoulder" + - "Peritoneum, NOS" + - "Pharynx, NOS" + - "Pineal gland" + - "Pituitary gland" + - "Placenta" + - "Pleura, NOS" + - "Postcricoid region" + - "Posterior cranial fossa" + - "Posterior mediastinum" + - "Posterior wall of bladder" + - "Posterior wall of hypopharynx" + - "Posterior wall of nasopharynx" + - "Posterior wall of oropharynx" + - "Prepuce" + - "Prostate gland" + - "Pylorus" + - "Pyriform sinus" + - "Rectosigmoid junction" + - "Rectum, NOS" + - "Renal pelvis" + - "Reticuloendothelial system, NOS" + - "Retina" + - "Retromolar area" + - "Retroperitoneum" + - "Rib, sternum, clavicle and associated joints" + - "Round ligament" + - "Saliva" + - "Scrotum, NOS" + - "Short bones of lower limb and associated joints" + - "Short bones of upper limb and associated joints" + - "Sigmoid colon" + - "Skin of lip, NOS" + - "Skin of lower limb and hip" + - "Skin of other and unspecified parts of face" + - "Skin of scalp and neck" + - "Skin of trunk" + - "Skin of upper limb and shoulder" + - "Skin, NOS" + - "Small intestine, NOS" + - "Soft palate, NOS" + - "Specified parts of peritoneum" + - "Spermatic cord" + - "Sphenoid sinus" + - "Spinal cord" + - "Spinal meninges" + - "Spleen" + - "Splenic flexure of colon" + - "Stomach, NOS" + - "Subglottis" + - "Sublingual gland" + - "Submandibular gland" + - "Superior wall of nasopharynx" + - "Supraglottis" + - "Tail of pancreas" + - "Temporal lobe" + - "Testis, NOS" + - "Thigh, NOS" + - "Thoracic esophagus" + - "Thorax, NOS" + - "Thymus" + - "Thyroid gland" + - "Tibia" + - "Tongue, NOS" + - "Tonsil, NOS" + - "Tonsillar fossa" + - "Tonsillar pillar" + - "Trachea" + - "Transverse colon" + - "Trigone of bladder" + - "Undescended testis" + - "Unknown" + - "Unknown primary site" + - "Upper Gum" + - "Upper limb, NOS" + - "Upper lobe, lung" + - "Upper respiratory tract, NOS" + - "Upper third of esophagus" + - "Upper-inner quadrant of breast" + - "Upper-outer quadrant of breast" + - "Urachus" + - "Ureter" + - "Ureteric orifice" + - "Urethra" + - "Urinary system, NOS" + - "Uterine adnexa" + - "Uterus, NOS" + - "Uvula" + - "Vagina, NOS" + - "Vallecula" + - "Ventral surface of tongue, NOS" + - "Ventricle, NOS" + - "Vertebral column" + - "Vestibule of mouth" + - "Vulva, NOS" + - "Waldeyer ring" Req: true Strict: true Private: false @@ -2030,17 +2044,19 @@ PropDefinitions: - Origin: caDSR Code: '2785839' Value: Specimen Histologic Grade Grading System Name Histologic Grade - Enum: - - "G1" - - "G2" - - "G3" - - "G4" - - "GB" - - "GX" - - "High Grade" - - "Intermediate Grade" - - "Low Grade" - - "Not Applicable" + Type: + value_type: list + Enum: + - "G1" + - "G2" + - "G3" + - "G4" + - "GB" + - "GX" + - "High Grade" + - "Intermediate Grade" + - "Low Grade" + - "Not Applicable" Req: false # 02/22/2022 adeforge, not required? correct: 28feb22 pdunn Strict: true Private: false @@ -2051,42 +2067,44 @@ PropDefinitions: - Origin: caDSR Code: '3440328' Value: Neoplasm American Joint Committee on Cancer Clinical Primary Tumor T Stage - Enum: - - "T0" - - "T1" - - "T1a" - - "T1a1" - - "T1a2" - - "T1b" - - "T1b1" - - "T1b2" - - "T1c" - - "T1mi" - - "T2" - - "T2a" - - "T2a1" - - "T2a2" - - "T2b" - - "T2c" - - "T2d" - - "T3" - - "T3a" - - "T3b" - - "T3c" - - "T3d" - - "T4" - - "T4a" - - "T4b" - - "T4c" - - "T4d" - - "T4e" - - "T5" - - "Ta" - - "Tis" - - "Tis (DCIS)" - - "Tis (LCIS)" - - "Tis (Paget's)" - - "TX" + Type: + value_type: list + Enum: + - "T0" + - "T1" + - "T1a" + - "T1a1" + - "T1a2" + - "T1b" + - "T1b1" + - "T1b2" + - "T1c" + - "T1mi" + - "T2" + - "T2a" + - "T2a1" + - "T2a2" + - "T2b" + - "T2c" + - "T2d" + - "T3" + - "T3a" + - "T3b" + - "T3c" + - "T3d" + - "T4" + - "T4a" + - "T4b" + - "T4c" + - "T4d" + - "T4e" + - "T5" + - "Ta" + - "Tis" + - "Tis (DCIS)" + - "Tis (LCIS)" + - "Tis (Paget's)" + - "TX" Req: false # 02/22/2022 adeforge, not required? correct: 28feb22 pdunn Strict: true Private: false @@ -2097,31 +2115,33 @@ PropDefinitions: - Origin: caDSR Code: '3440330' Value: Neoplasm American Joint Committee on Cancer Clinical Regional Lymph Node N Stage - Enum: - - "N0" - - "N0 (i-)" - - "N0 (i+)" - - "N0 (mol-)" - - "N0 (mol+)" - - "N1" - - "N1a" - - "N1b" - - "N1bI" - - "N1bII" - - "N1bIII" - - "N1bIV" - - "N1c" - - "N1mi" - - "N2" - - "N2a" - - "N2b" - - "N2c" - - "N3" - - "N3a" - - "N3b" - - "N3c" - - "N4" - - "NX" + Type: + value_type: list + Enum: + - "N0" + - "N0 (i-)" + - "N0 (i+)" + - "N0 (mol-)" + - "N0 (mol+)" + - "N1" + - "N1a" + - "N1b" + - "N1bI" + - "N1bII" + - "N1bIII" + - "N1bIV" + - "N1c" + - "N1mi" + - "N2" + - "N2a" + - "N2b" + - "N2c" + - "N3" + - "N3a" + - "N3b" + - "N3c" + - "N4" + - "NX" Req: false # 02/22/2022 adeforge, not required? correct: 28feb22 pdunn Strict: true Private: false @@ -2132,14 +2152,16 @@ PropDefinitions: - Origin: caDSR Code: '3440331' Value: Neoplasm American Joint Committee on Cancer Clinical Distant Metastasis M Stage - Enum: - - "cM0 (i+)" - - "M0" - - "M1" - - "M1a" - - "M1b" - - "M1c" - - "MX" + Type: + value_type: list + Enum: + - "cM0 (i+)" + - "M0" + - "M1" + - "M1a" + - "M1b" + - "M1c" + - "MX" Req: false # 02/22/2022 adeforge, not required? correct: 28feb22 pdunn Strict: true Private: false @@ -2151,16 +2173,18 @@ PropDefinitions: - Origin: caDSR Code: '12217251' Value: Disease Phase Timepoint Category - Enum: - - 'Initial Diagnosis' - - 'Disease Progression' - - 'Refractory' - - 'Recurrent Disease' - - 'Disease Relapse/Progression' - - 'Complete Remission' - - 'Post-treatment' - - 'Unknown' - - 'Not Reported' + Type: + value_type: list + Enum: + - 'Initial Diagnosis' + - 'Disease Progression' + - 'Refractory' + - 'Recurrent Disease' + - 'Disease Relapse/Progression' + - 'Complete Remission' + - 'Post-treatment' + - 'Unknown' + - 'Not Reported' Req: true Strict: true Private: false @@ -2171,13 +2195,15 @@ PropDefinitions: - Origin: caDSR Code: '12922545' Value: Tumor Classification Type - Enum: - - 'Primary' - - 'Regional' - - 'Metastatic' - - 'Unknown' - - 'Not Reported' - - 'Not Applicable' + Type: + value_type: list + Enum: + - 'Primary' + - 'Regional' + - 'Metastatic' + - 'Unknown' + - 'Not Reported' + - 'Not Applicable' Req: true Strict: true Private: false @@ -2201,15 +2227,17 @@ PropDefinitions: - Origin: caDSR Code: '5432687' Value: Tissue Sample Description Category - Enum: - - 'Abnormal' - - 'Non-neoplastic' - - 'Normal' - - 'Peritumoral' - - 'Tumor' - - 'Unavailable' - - 'Unknown' - - 'Unspecified' + Type: + value_type: list + Enum: + - 'Abnormal' + - 'Non-neoplastic' + - 'Normal' + - 'Peritumoral' + - 'Tumor' + - 'Unavailable' + - 'Unknown' + - 'Unspecified' Req: true Strict: true Private: false