From 7653d3367c7ba70e2715645cd2a79042fb34eca7 Mon Sep 17 00:00:00 2001
From: Zhou Ji <zj2122@columbia.edu>
Date: Sun, 10 Jul 2022 20:23:07 -0400
Subject: [PATCH] implement CNKB interaction tooltips

---
 web/src/main/webapp/js/gene.cart.js              | 4 +++-
 web/src/main/webapp/js/supported.interactomes.js | 8 ++++----
 2 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/web/src/main/webapp/js/gene.cart.js b/web/src/main/webapp/js/gene.cart.js
index 1e381e09..72c65f4c 100644
--- a/web/src/main/webapp/js/gene.cart.js
+++ b/web/src/main/webapp/js/gene.cart.js
@@ -727,7 +727,9 @@ const drawCNKBCytoscape = function (data, confidence_type) {
         const types = { 7: "p-value", 1: "likelihood ratio", 3: "mutual information", 6: "mode of action", 4: "probability" }
         $("#interaction-values").empty()
         for (const type in confidences) {
-            $("#interaction-values").append(`<li>${types[type]}: ${confidences[type]}</li>`)
+            const type_name = types[type]
+            const tooltip = supported_confidence_types.find(x => x.name == type_name)["description"]
+            $("#interaction-values").append(`<li title="${tooltip}">${type_name}: ${confidences[type]}</li>`)
         }
         $("#network-detail-viewer > #initial-text").hide()
         $("#gene-detail").hide()
diff --git a/web/src/main/webapp/js/supported.interactomes.js b/web/src/main/webapp/js/supported.interactomes.js
index b87e3516..347b46d9 100644
--- a/web/src/main/webapp/js/supported.interactomes.js
+++ b/web/src/main/webapp/js/supported.interactomes.js
@@ -1,14 +1,14 @@
 export const supported_confidence_types = [{
     name: "p-value",
-    description: "the probability that the measured interaction actually occurred by chance",
+    description: "Probability that the measured interaction occurred by chance, under a null model.",
     directionality: "decreasing"
 }, {
     name: "likelihood ratio",
-    description: "an edge weight that indicates how strong the mutual information for an edge is when compared to the maximum observed MI in the network, it ranges between 0 and 1.",
+    description: "Ratio of interaction mutual information divided by the maximum mutual information observed in the network (ranges between 0 and 1).",
     directionality: "increasing"
 }, {
     name: "mutual information",
-    description: "quantifies the \"amount of information\" obtained about one random variable by observing the other random variable",
+    description: "Measure of statistical correlation between the gene expression of the two genes comprising the interaction.",
     directionality: "increasing"
 }, {
     name: "probability",
@@ -16,7 +16,7 @@ export const supported_confidence_types = [{
     directionality: "increasing"
 }, {
     name: "mode of action",
-    description: "indicates the sign of the association between regulator and target gene and ranges between -1 and +1. It is inferred by Spearman correlation analysis.",
+    description: "Spearman correlation between the gene expression of the two genes comprising the interaction (ranges between -1 and 1). Provides information about the possible mode of mutual regulation (activating or repressing, depending on positive or negative MoA).",
     directionality: "increasing" /* absolute values */
 }, ]