From de5efc391c102abb96264da44a3bf5fa03d4705b Mon Sep 17 00:00:00 2001
From: Peter van Heusden <pvanheusden@uwc.ac.za>
Date: Sun, 6 Aug 2023 22:04:16 +0200
Subject: [PATCH] Add note on usage to README, bump version

---
 README.md | 2 ++
 setup.cfg | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 3c9943a..f205b2e 100644
--- a/README.md
+++ b/README.md
@@ -75,6 +75,8 @@ optional arguments:
   --snv_only_filter     Mask out variants that are not SNVs
 ```
 
+*Note* that there are no filters by default. Each filter to be used needs to be explicitly mentioned.
+
 To export a region (from the list of possible region masks) in BED format, use the `tb_region_list_to_bed` command:
 
 
diff --git a/setup.cfg b/setup.cfg
index 2c9bbba..02a53ce 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = tb_variant_filter
-version = 0.3.6
+version = 0.4.0
 author = "Peter van Heusden"
 author_email = pvh@sanbi.ac.za
 description = This tool offers multiple options for filtering variants (in VCF files, relative to M. tuberculosis H37Rv).