From 72613d82c0860cbb3ffe14d5b5ce9ffb040ebd86 Mon Sep 17 00:00:00 2001 From: CamDavidsonPilon Date: Sun, 15 Mar 2020 10:04:35 -0400 Subject: [PATCH] changelog --- docs/Changelog.rst | 83 +++++++++++++++++++++++++++------------------- 1 file changed, 49 insertions(+), 34 deletions(-) diff --git a/docs/Changelog.rst b/docs/Changelog.rst index c43e15918..4b416a615 100644 --- a/docs/Changelog.rst +++ b/docs/Changelog.rst @@ -1,6 +1,19 @@ Changelog --------- +0.24.2 - Unreleased +^^^^^^^^^^^^^^^^^^^ + +Bug fixes +''''''''' + +- Fixed bug when no covariates were passed into ``CoxPHFitter``. See + #975 +- Fixed error in ``StatisticalResult`` where the test name was not + displayed correctly. +- Fixed a keyword bug in ``plot_covariate_groups`` for parametric + models. + 0.24.1 - 2020-03-05 ^^^^^^^^^^^^^^^^^^^ @@ -10,6 +23,8 @@ New features - Stability improvements for GeneralizedGammaRegressionFitter and CoxPHFitter with spline estimation. +.. _bug-fixes-1: + Bug fixes ''''''''' @@ -21,8 +36,8 @@ Bug fixes ^^^^^^^^^^^^^^^^^^^ This version and future versions of lifelines no longer support py35. -Pandas 1.0 is fully supported, along with previous version. Minimum -Scipy has been bumped to 1.2.0 +Pandas 1.0 is fully supported, along with previous versions. Minimum +Scipy has been bumped to 1.2.0. .. _new-features-1: @@ -44,7 +59,7 @@ New features - Univariate parametric models have a ``plot_density``, ``density_at_times``, and property ``density_`` that computes the probability density function estimates. -- new dataset for interval regression involving C. Botulinum. +- new dataset for interval regression involving *C. Botulinum*. - new ``lifelines.fitters.mixins.ProportionalHazardMixin`` that implements proportional hazard checks. @@ -74,7 +89,7 @@ API Changes to ``scoring_method``. - removed ``_score_`` and ``path`` from Cox model. -.. _bug-fixes-1: +.. _bug-fixes-2: Bug fixes ''''''''' @@ -92,7 +107,7 @@ Bug fixes 0.23.9 - 2020-01-28 ^^^^^^^^^^^^^^^^^^^ -.. _bug-fixes-2: +.. _bug-fixes-3: Bug fixes ''''''''' @@ -108,7 +123,7 @@ Bug fixes 0.23.8 - 2020-01-21 ^^^^^^^^^^^^^^^^^^^ -.. _bug-fixes-3: +.. _bug-fixes-4: Bug fixes ''''''''' @@ -159,7 +174,7 @@ New features - New lymph node cancer dataset, originally from *H.F. for the German Breast Cancer Study Group (GBSG) (1994)* -.. _bug-fixes-4: +.. _bug-fixes-5: Bug fixes ''''''''' @@ -188,7 +203,7 @@ New features - ``StatisticalResult.print_summary`` supports html output. -.. _bug-fixes-5: +.. _bug-fixes-6: Bug fixes ''''''''' @@ -213,7 +228,7 @@ New features - performance improvements on regression models’ preprocessing. Should make datasets with high number of columns more performant. -.. _bug-fixes-6: +.. _bug-fixes-7: Bug fixes ''''''''' @@ -237,7 +252,7 @@ New features - performance improvements for ``CoxPHFitter`` - up to 30% performance improvements for some datasets. -.. _bug-fixes-7: +.. _bug-fixes-8: Bug fixes ''''''''' @@ -263,7 +278,7 @@ New features Jupyter notebooks! - silenced some warnings. -.. _bug-fixes-8: +.. _bug-fixes-9: Bug fixes ''''''''' @@ -293,7 +308,7 @@ API Changes The tests were re-factored to be shipped with the package. Let me know if this causes problems. -.. _bug-fixes-9: +.. _bug-fixes-10: Bug fixes ''''''''' @@ -308,7 +323,7 @@ Bug fixes 0.22.9 - 2019-10-30 ^^^^^^^^^^^^^^^^^^^ -.. _bug-fixes-10: +.. _bug-fixes-11: Bug fixes ''''''''' @@ -335,7 +350,7 @@ New features - ``conditional_after`` now available in ``CoxPHFitter.predict_median`` - Suppressed some unimportant warnings. -.. _bug-fixes-11: +.. _bug-fixes-12: Bug fixes ''''''''' @@ -355,7 +370,7 @@ New features - new ``ApproximationWarning`` to tell you if the package is making an potentially mislead approximation. -.. _bug-fixes-12: +.. _bug-fixes-13: Bug fixes ''''''''' @@ -386,7 +401,7 @@ New features - ``conditional_after`` works for ``CoxPHFitter`` prediction models 😅 -.. _bug-fixes-13: +.. _bug-fixes-14: Bug fixes ''''''''' @@ -416,7 +431,7 @@ New features weights. - Better support for predicting on Pandas Series -.. _bug-fixes-14: +.. _bug-fixes-15: Bug fixes ''''''''' @@ -457,7 +472,7 @@ API changes - ``KaplanMeierFitter.survival_function_``\ ‘s’ index is no longer given the name “timeline”. -.. _bug-fixes-15: +.. _bug-fixes-16: Bug fixes ''''''''' @@ -494,7 +509,7 @@ API changes gains only in Cox models, and only a small fraction of the API was being used. -.. _bug-fixes-16: +.. _bug-fixes-17: Bug fixes ''''''''' @@ -518,7 +533,7 @@ New features - lifelines is now compatible with scipy>=1.3.0 -.. _bug-fixes-17: +.. _bug-fixes-18: Bug fixes ''''''''' @@ -562,7 +577,7 @@ API changes ``.print_summary`` includes confidence intervals for the exponential of the value. -.. _bug-fixes-18: +.. _bug-fixes-19: Bug fixes ''''''''' @@ -611,7 +626,7 @@ API changes could set ``fit_intercept`` to False and not have to set ``ancillary_df`` - now one must specify a DataFrame. -.. _bug-fixes-19: +.. _bug-fixes-20: Bug fixes ''''''''' @@ -634,7 +649,7 @@ New features - ``scoring_method`` now a kwarg on ``sklearn_adapter`` -.. _bug-fixes-20: +.. _bug-fixes-21: Bug fixes ''''''''' @@ -663,7 +678,7 @@ New features - ``CoxPHFitter.check_assumptions`` now accepts a ``columns`` parameter to specify only checking a subset of columns. -.. _bug-fixes-21: +.. _bug-fixes-22: Bug fixes ''''''''' @@ -699,7 +714,7 @@ API changes - removing ``_compute_likelihood_ratio_test`` on regression models. Use ``log_likelihood_ratio_test`` now. -.. _bug-fixes-22: +.. _bug-fixes-23: Bug fixes ''''''''' @@ -726,7 +741,7 @@ API changes - output of ``survival_table_from_events`` when collapsing rows to intervals now removes the “aggregate” column multi-index. -.. _bug-fixes-23: +.. _bug-fixes-24: Bug fixes ''''''''' @@ -763,7 +778,7 @@ API changes - ``entries`` property in multivariate parametric models has a new Series name: ``entry`` -.. _bug-fixes-24: +.. _bug-fixes-25: Bug fixes ''''''''' @@ -795,7 +810,7 @@ API changes - in ``AalenJohansenFitter``, the ``variance`` parameter is renamed to ``variance_`` to align with the usual lifelines convention. -.. _bug-fixes-25: +.. _bug-fixes-26: Bug fixes ''''''''' @@ -828,7 +843,7 @@ API changes - Pandas is now correctly pinned to >= 0.23.0. This was always the case, but not specified in setup.py correctly. -.. _bug-fixes-26: +.. _bug-fixes-27: Bug fixes ''''''''' @@ -884,7 +899,7 @@ API changes @vpolimenov! - The ``C`` column in ``load_lcd`` dataset is renamed to ``E``. -.. _bug-fixes-27: +.. _bug-fixes-28: Bug fixes ''''''''' @@ -953,7 +968,7 @@ API changes transposed now (previous parameters where columns, now parameters are rows). -.. _bug-fixes-28: +.. _bug-fixes-29: Bug fixes ''''''''' @@ -980,7 +995,7 @@ New features 0.19.4 - 2019-02-25 ^^^^^^^^^^^^^^^^^^^ -.. _bug-fixes-29: +.. _bug-fixes-30: Bug fixes ''''''''' @@ -1017,7 +1032,7 @@ New features - ``ParametricUnivariateFitters``, like ``WeibullFitter``, have smoothed plots when plotting (vs stepped plots) -.. _bug-fixes-30: +.. _bug-fixes-31: Bug fixes ''''''''' @@ -1093,7 +1108,7 @@ API changes means that the *default* for alpha is set to 0.05 in the latest lifelines, instead of 0.95 in previous versions. -.. _bug-fixes-31: +.. _bug-fixes-32: Bug Fixes '''''''''