NAMESPACE

# Generated by roxygen2: do not edit by hand

export(adjust_susie_weights)
export(align_variant_names)
export(allele_qc)
export(bayes_a_rss_weights)
export(bayes_a_weights)
export(bayes_alphabet_rss_weights)
export(bayes_alphabet_weights)
export(bayes_c_rss_weights)
export(bayes_c_weights)
export(bayes_l_rss_weights)
export(bayes_l_weights)
export(bayes_n_rss_weights)
export(bayes_n_weights)
export(bayes_r_rss_weights)
export(bayes_r_weights)
export(clean_context_names)
export(coloc_post_processor)
export(coloc_wrapper)
export(compute_qtl_enrichment)
export(ctwas_bimfile_loader)
export(ctwas_ld_loader)
export(dentist)
export(dentist_single_window)
export(enet_weights)
export(filter_invalid_summary_stat)
export(filter_mixture_components)
export(filter_variants_by_ld_reference)
export(find_data)
export(find_duplicate_variants)
export(fsusie_get_cs)
export(fsusie_wrapper)
export(gbayes_rss)
export(get_ctwas_meta_data)
export(get_nested_element)
export(glmnet_weights)
export(harmonize_twas)
export(lasso_weights)
export(lbf_to_alpha)
export(load_LD_matrix)
export(load_genotype_region)
export(load_multitrait_R_sumstat)
export(load_multitrait_tensorqtl_sumstat)
export(load_quantile_twas_weights)
export(load_regional_association_data)
export(load_regional_functional_data)
export(load_regional_multivariate_data)
export(load_regional_regression_data)
export(load_regional_univariate_data)
export(load_rss_data)
export(load_tsv_region)
export(load_twas_weights)
export(mash_pipeline)
export(mash_rand_null_sample)
export(merge_mash_data)
export(mr_analysis)
export(mr_ash_rss)
export(mr_ash_rss_weights)
export(mr_format)
export(mrash_weights)
export(mrmash_weights)
export(mrmash_wrapper)
export(multicontext_ld_clumping)
export(multigene_udr)
export(multivariate_analysis_pipeline)
export(mvsusie_weights)
export(parse_region)
export(parse_variant_id)
export(perform_qr_analysis)
export(prs_cs)
export(prs_cs_weights)
export(qr_screen)
export(quantile_twas_weight_pipeline)
export(raiss)
export(region_to_df)
export(rss_analysis_pipeline)
export(rss_basic_qc)
export(sdpr)
export(sdpr_weights)
export(slalom)
export(summary_stats_qc)
export(susie_ash)
export(susie_post_processor)
export(susie_rss_pipeline)
export(susie_rss_qc)
export(susie_rss_wrapper)
export(susie_weights)
export(susie_wrapper)
export(trim_ctwas_variants)
export(twas_analysis)
export(twas_joint_z)
export(twas_multivariate_weights_pipeline)
export(twas_pipeline)
export(twas_predict)
export(twas_weights)
export(twas_weights_cv)
export(twas_weights_pipeline)
export(twas_z)
export(univariate_analysis_pipeline)
export(wald_test_pval)
export(xqtl_enrichment_wrapper)
import(Rcpp)
import(qgg)
importFrom(GBJ,GBJ)
importFrom(IRanges,IRanges)
importFrom(IRanges,end)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,reduce)
importFrom(IRanges,start)
importFrom(Rfast,cora)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(bigsnpr,snp_clumping)
importFrom(bigstatsr,FBM.code256)
importFrom(coloc,coloc.bf_bf)
importFrom(data.table,as.data.table)
importFrom(data.table,fread)
importFrom(data.table,setnames)
importFrom(doFuture,registerDoFuture)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,intersect)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(fsusieR,cal_cor_cs)
importFrom(fsusieR,susiF)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(future,availableCores)
importFrom(future,multicore)
importFrom(future,plan)
importFrom(glmnet,cv.glmnet)
importFrom(harmonicmeanp,pLandau)
importFrom(magrittr,"%>%")
importFrom(mashr,cov_canonical)
importFrom(mashr,estimate_null_correlation_simple)
importFrom(mashr,mash_set_data)
importFrom(matrixStats,colVars)
importFrom(mr.ash.alpha,coef.mr.ash)
importFrom(mr.ash.alpha,mr.ash)
importFrom(mr.mash.alpha,coef.mr.mash)
importFrom(mr.mash.alpha,compute_canonical_covs)
importFrom(mr.mash.alpha,compute_univariate_sumstats)
importFrom(mr.mash.alpha,expand_covs)
importFrom(mr.mash.alpha,mr.mash)
importFrom(mvsusieR,coef.mvsusie)
importFrom(mvsusieR,create_mixture_prior)
importFrom(mvsusieR,mvsusie)
importFrom(pgenlibr,GetVariantCt)
importFrom(pgenlibr,NewPgen)
importFrom(pgenlibr,ReadList)
importFrom(purrr,compact)
importFrom(purrr,exec)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_int)
importFrom(purrr,pmap)
importFrom(qgg,gbayes)
importFrom(quantreg,rq)
importFrom(quantreg,rq.fit.br)
importFrom(qvalue,qvalue)
importFrom(readr,cols)
importFrom(readr,parse_number)
importFrom(readr,read_delim)
importFrom(rlang,"!!!")
importFrom(snpStats,read.plink)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,lag)
importFrom(stats,lm.fit)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(susieR,coef.susie)
importFrom(susieR,get_cs_correlation)
importFrom(susieR,susie)
importFrom(susieR,susie_get_cs)
importFrom(susieR,susie_get_objective)
importFrom(susieR,susie_get_pip)
importFrom(susieR,susie_rss)
importFrom(susieR,univariate_regression)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tools,file_path_sans_ext)
importFrom(udr,ud_fit)
importFrom(udr,ud_init)
importFrom(utils,modifyList)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(vctrs,vec_duplicate_detect)
useDynLib(pecotmr)