diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1767863..1f8873e 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,8 @@
  - Added `sequencing_run` and `lims_id` to output (bonsai input)
  - Added function for annotating delly variants intersecting with resistance targets
  - Added capability of handling empty dictionaries from serotypefinder output
+ - Added pytest for `prp annotate-delly`
+ - Added `pyyaml` to docker image
 
 ### Fixed
 
diff --git a/pyproject.toml b/pyproject.toml
index ec3bc76..164b022 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,7 +25,8 @@ dependencies = [
     "pandas==2.1.3",
     "Biopython==1.83",
     "cyvcf2",
-    "pysam"
+    "pysam",
+    "pyyaml"
 ]
 
 [project.urls]
diff --git a/tests/fixtures/mtuberculosis/__init__.py b/tests/fixtures/mtuberculosis/__init__.py
index 3fa7b36..449bd4d 100644
--- a/tests/fixtures/mtuberculosis/__init__.py
+++ b/tests/fixtures/mtuberculosis/__init__.py
@@ -51,3 +51,18 @@ def mtuberculosis_snv_vcf_path(data_path):
 def mtuberculosis_sv_vcf_path(data_path):
     """Get path for mtuberculosis meta file"""
     return str(data_path.joinpath("mtuberculosis", "sv.vcf"))
+
+@pytest.fixture()
+def mtuberculosis_delly_bcf_path(data_path):
+    """Get path for mtuberculosis meta file"""
+    return str(data_path.joinpath("mtuberculosis", "delly.bcf"))
+
+@pytest.fixture()
+def converged_bed_path(data_path):
+    """Get path for mtuberculosis converged who fohm tbdb bgzipped bed file"""
+    return str(data_path.joinpath("mtuberculosis", "converged_who_fohm_tbdb.bed.gz"))
+
+@pytest.fixture()
+def annotated_delly_path(data_path):
+    """Get path for annotated delly vcf file"""
+    return str(data_path.joinpath("mtuberculosis", "annotated_delly.vcf"))
diff --git a/tests/fixtures/mtuberculosis/annotated_delly.vcf b/tests/fixtures/mtuberculosis/annotated_delly.vcf
new file mode 100644
index 0000000..6413816
--- /dev/null
+++ b/tests/fixtures/mtuberculosis/annotated_delly.vcf
@@ -0,0 +1,98 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##fileDate=20240320
+##ALT=<ID=DEL,Description="Deletion">
+##ALT=<ID=DUP,Description="Duplication">
+##ALT=<ID=INV,Description="Inversion">
+##ALT=<ID=BND,Description="Translocation">
+##ALT=<ID=INS,Description="Insertion">
+##FILTER=<ID=LowQual,Description="Poor quality and insufficient number of PEs and SRs.">
+##INFO=<ID=CIEND,Number=2,Type=Integer,Description="PE confidence interval around END">
+##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="PE confidence interval around POS">
+##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for POS2 coordinate in case of an inter-chromosomal translocation">
+##INFO=<ID=POS2,Number=1,Type=Integer,Description="Genomic position for CHR2 in case of an inter-chromosomal translocation">
+##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
+##INFO=<ID=PE,Number=1,Type=Integer,Description="Paired-end support of the structural variant">
+##INFO=<ID=MAPQ,Number=1,Type=Integer,Description="Median mapping quality of paired-ends">
+##INFO=<ID=SRMAPQ,Number=1,Type=Integer,Description="Median mapping quality of split-reads">
+##INFO=<ID=SR,Number=1,Type=Integer,Description="Split-read support">
+##INFO=<ID=SRQ,Number=1,Type=Float,Description="Split-read consensus alignment quality">
+##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Split-read consensus sequence">
+##INFO=<ID=CONSBP,Number=1,Type=Integer,Description="Consensus SV breakpoint position">
+##INFO=<ID=CE,Number=1,Type=Float,Description="Consensus sequence entropy">
+##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
+##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Insertion length for SVTYPE=INS.">
+##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
+##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
+##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
+##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Type of approach used to detect SV">
+##INFO=<ID=INSLEN,Number=1,Type=Integer,Description="Predicted length of the insertion">
+##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Predicted microhomology length using a max. edit distance of 2">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Log10-scaled genotype likelihoods for RR,RA,AA genotypes">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=FT,Number=1,Type=String,Description="Per-sample genotype filter">
+##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the SV">
+##FORMAT=<ID=RCL,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the left control region">
+##FORMAT=<ID=RCR,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the right control region">
+##FORMAT=<ID=RDCN,Number=1,Type=Integer,Description="Read-depth based copy-number estimate for autosomal sites">
+##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# high-quality reference pairs">
+##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality variant pairs">
+##FORMAT=<ID=RR,Number=1,Type=Integer,Description="# high-quality reference junction reads">
+##FORMAT=<ID=RV,Number=1,Type=Integer,Description="# high-quality variant junction reads">
+##reference=/fs1/pipelines/jasen/assets/tbdb/converged_who_fohm_tbdb.fasta
+##contig=<ID=Chromosome,length=4411532>
+##INFO=<ID=gene,Number=1,Type=Character,Description="overlapping gene">
+##INFO=<ID=locus_tag,Number=1,Type=Character,Description="overlapping tbdb locus tag">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	tb_test_1
+Chromosome	79571	DEL00000000	C	<DEL>	4432	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=83034;PE=81;MAPQ=60;CT=3to5;CIPOS=-116,116;CIEND=-116,116	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-448.606,-24.0894,0:10000:PASS:1263:0:1163:0:0:81:0:0
+Chromosome	335663	DEL00000001	CCCGCCCGTGAGGGCTACTACGCCGCCGCCGGCGCCGCCGGCG	C	170	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=335705;PE=0;MAPQ=0;CT=3to5;CIPOS=-18,18;CIEND=-18,18;SRMAPQ=60;INSLEN=0;HOMLEN=23;SR=3;SRQ=0.986667;CONSENSUS=GCCCCCGCCGACTCCGGCGGCGCCGAAGAGCAGGCCGGCGTTGCCGCCAGCCCCGCCGGCGCCGCCGGCCCCGCCGGCGCCGAACAGCATGGCGTTGCCGCCGGCTCCGCCGGACCCGCCGCTCCCACTGCTGGCGACCCCGCCAGCGCC;CE=1.60897;CONSBP=70	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-35.9948,-3.60715,0:36:PASS:430:150:473:0:0:0:0:12
+Chromosome	336122	DEL00000002	C	<DEL>	1711	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=338558;PE=32;MAPQ=60;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-240.796,-13.5426,0:135:PASS:195:121:567:0:0:45:0:0
+Chromosome	336681	DEL00000003	G	<DEL>	47	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1188981;PE=4;MAPQ=12;CT=3to5;CIPOS=-589,589;CIEND=-589,589;gene=fgd1,mshA,ccsA,rpoB,rpoC,mmpL5,mmpS5,mmpR5,rpsL,rplC;locus_tag=Rv0407,Rv0486,Rv0529,Rv0667,Rv0668,Rv0676c,Rv0677c,Rv0678,Rv0682,Rv0701	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-1.08764,0,-44.5085:11:LowQual:225618:555892:286157:2:8:4:0:0
+Chromosome	426942	DEL00000004	AGCCGATGTTGTTGTTGCCGGTGTTGGCAATGCCCTGGTTGAAGTTGCCCGCGTTGGCCATGCCAAAGTTGTTGTCGCCCAGGTTGAACAGGCCCATGTTGGCGATGCCGGCGTTCAGCGGGCCGAACCCGATCTGGTTGTCGCCGGACAGGCCGAT	A	929	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=427098;PE=0;MAPQ=0;CT=3to5;CIPOS=-27,27;CIEND=-27,27;SRMAPQ=60;INSLEN=0;HOMLEN=27;SR=16;SRQ=0.990244;CONSENSUS=AAACCGTTGTTGCCGGCGCCGGAGTTCAGGGAGCTGAAGCCGGACAAGCCGTCGCCGGTCAGCCCGATGCCGACGTTGTTGTTGCCGGTGTTGAACAAGCCGATGTTGTTGTTGCCGGTGTTGCCGAAGCCGATGTTGTAGTTACCGGTGTTGCCGACACCGATGTTGTAGTTGCCGGTGTTGCCGATACCGATGTTGTTGAAAG;CE=1.9542;CONSBP=98	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-112.37,-11.409,0:114:PASS:5185:1075:4689:0:0:0:0:38
+Chromosome	576459	DEL00000005	CCGCGGCGGTGGGCGGGCTGCCCGTCGCGGTG	C	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=576490;PE=0;MAPQ=0;CT=3to5;CIPOS=-8,8;CIEND=-8,8;SRMAPQ=60;INSLEN=0;HOMLEN=8;SR=2;SRQ=0.981982;CONSENSUS=TGCCGACCTACTCCGAGTCGTTCGGCCTGGTGGCTGTGGAGGCCCAAGCGTGCGGCACACCGGTGGTGGCCGCGACGGGATCACCGGCACCCTGGTGTCCGGGCACGAGGT;CE=1.85921;CONSBP=70;gene=mshA;locus_tag=Rv0486	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-8.44223,-179.974:84:PASS:2444:3623:1431:2:0:0:64:4
+Chromosome	673144	DEL00000006	C	<DEL>	180	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=674133;PE=3;MAPQ=60;CT=3to5;CIPOS=-267,267;CIEND=-267,267	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-6.86191,0,-192.862:69:PASS:13888:35590:33759:1:34:3:0:0
+Chromosome	745879	DEL00000007	GGGCGCACCTGCAGGCCGACATCGCGTTGAGCATTCCCGCCGGCGCGCCGC	G	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=745929;PE=0;MAPQ=0;CT=3to5;CIPOS=-7,7;CIEND=-7,7;SRMAPQ=60;INSLEN=0;HOMLEN=8;SR=2;SRQ=1;CONSENSUS=GTGCTGGGCGGCGTGGTCGACGTCGTGTGTCCGCTCGGCTGGCCGGCCACACCGGCTCGGTTGCCGTTCACGCTGGGCGCCGGCGGGACCGTATCCGGTCCGCGCGCAGCTGCGCGTCGTCGACACGGCGGTACCGGCCG;CE=1.75836;CONSBP=83	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-27.3734,-344.95:10000:PASS:4094:8730:4464:2:0:0:118:3
+Chromosome	888992	DEL00000008	AACCTCAACACCCCCTCAAGTGAAGGAGG	A	1195	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=889020;PE=0;MAPQ=0;CT=3to5;CIPOS=-1,1;CIEND=-1,1;SRMAPQ=60;INSLEN=0;HOMLEN=0;SR=20;SRQ=1;CONSENSUS=CTCTTGGGGTTGGCGTTGAGCAGTATTGCCGGCACTAGGTGAGAAGGACCGGCCGGCGTGACTTGATAGGAGCGTGGCTTTCGCCCCGACTGAGATGTGTCCGCCGACCGGCCCATGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTG;CE=1.94461;CONSBP=115	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-464.773,0,-134.821:10000:PASS:4558:4609:1682:1:0:0:70:180
+Chromosome	889021	DEL00000009	T	<DEL>	118	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3711934;PE=15;MAPQ=8;CT=3to5;CIPOS=-261,261;CIEND=-261,261;gene=fbiC,Rv1258c,embR,atpE,rrs,rrl,fabG1,inhA,rpsA,tlyA,ndh,katG,PPE35,Rv1979c,pncA,kasA,eis,ahpC,folC,pepQ,ribD,Rv2752c,thyX,thyA,ald,fbiD,Rv3083,fprA,whiB7,Rv3236c,fbiA,fbiB;locus_tag=Rv1173,Rv1258c,Rv1267c,Rv1305,EBG00000313325,EBG00000313339,Rv1483,Rv1484,Rv1630,Rv1694,Rv1854c,Rv1908c,Rv1918c,Rv1979c,Rv2043c,Rv2245,Rv2416c,Rv2428,Rv2447c,Rv2535c,Rv2671,Rv2752c,Rv2754c,Rv2764c,Rv2780,Rv2983,Rv3083,Rv3106,Rv3197A,Rv3236c,Rv3261,Rv3262	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-17.9337,-273.799:10000:PASS:586595:1839942:445619:4:84:15:0:0
+Chromosome	1086194	DEL00000010	GATCATCCCGCCTTCCTCGTAGTCCTTGCCCACCATGTAGCCGGTGGTGTTGTGTAAGAACAACAGCGGCGTGTCGGCCCGGTTGGCCAGCTGGATGAACTGGGTGGCCTTCTGTGATTCCTCGCTGAACAGCACGCCGCGGGCGTTGGCCAGGATGCCCAGCGGATAGCCGTGCAACCGAGCCCAGCCGGTCACCAGAGACGACCCGTACAGCGGCTTGAATTCGTCGAACTCGGAGC	G	1200	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1086432;PE=0;MAPQ=0;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=3;SR=20;SRQ=1;CONSENSUS=ATGCCGTAGTGCCCGGCGCCGTAGGACGCGCCGATCAGCAGCGAGATGTGCGGGACGGTCGAGTTGGACACGGCGTTGATCATCATCGAGCCATGCTTGCATCGACGATGCGGGCGATCACCTCGCGCGGGTCGAATGGGATGCGCAGATCCGGGGGCACGATGCCGA;CE=1.91853;CONSBP=99	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-614.911,-61.6221,0:10000:PASS:24952:149:22617:0:0:0:0:205
+Chromosome	1389302	DEL00000011	GAGCCGAACGCCTCGTCGCTGTTTGATGTCTCCTCGAGCGTTCGGCTGAGCGAACTC	G	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1389358;PE=0;MAPQ=0;CT=3to5;CIPOS=-18,18;CIEND=-18,18;SRMAPQ=60;INSLEN=0;HOMLEN=18;SR=2;SRQ=1;CONSENSUS=TGGCTAAACCCTGTACGCCGAGCATCGGCTTACCGAGCCGAACGCCTCGTCGAGGATCTCCTGCTGTTCGACGGCGTGCACCTTCGACGAGCCTGACGACGGGGCTGACATCGCCCGGCG;CE=1.92435;CONSBP=35	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-13.8466,-209.97:138:PASS:4421:7853:3228:2:0:0:73:3
+Chromosome	1541946	DEL00000012	C	<DEL>	6350	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1543304;PE=86;MAPQ=60;CT=3to5;CIPOS=-6,6;CIEND=-6,6;SRMAPQ=60;INSLEN=0;HOMLEN=5;SR=20;SRQ=1;CONSENSUS=CCTGGCCGGTCCGGTACTCGTCCGCGGGCGGAGGCCGCCTTCGAAGAAATCCTTTGAGAATTCGCCAAGGCCGTCGACCCAGCATGGGGTCAGCTCGCCAGCCGCGCCGGCTGGCAACCGTTCCCGCTCGAGAAAGACCTGGAGGAATACCAGTGACAAACGACCTCCCAGAC;CE=1.92567;CONSBP=98	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-338.951,-33.9673,0:10000:PASS:478:0:478:0:0:86:0:113
+Chromosome	1633539	DEL00000013	G	<DEL>	632	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1636881;PE=11;MAPQ=60;CT=3to5;CIPOS=-216,216;CIEND=-216,216	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-57.7815,0,-36.5816:10000:PASS:352:1034:571:2:7:11:0:0
+Chromosome	1741362	DEL00000014	CCGCGCGCCGGCGACCCGGGTAGACACCGCGATCACCACCGGATCGCTCCCGTCTCGACAGTGGCGACGGACTCCCTCGATCACGGCGGCCCCGGCATTGCCCGAGCCCAGCGCCTCCAGCACCACGGCG	C	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=1741491;PE=0;MAPQ=0;CT=3to5;CIPOS=-13,13;CIEND=-13,13;SRMAPQ=60;INSLEN=0;HOMLEN=13;SR=2;SRQ=0.991935;CONSENSUS=CGCGGTACCATCACCGCGCCAGCCTCCACCAGGTCGTGCCCGGGACCATAGCTTGCGCCGACCCGCGCGCCGGCTGCCACACAGGCGTCCATCGCCACCGCGTCACTTCCCGGATAGACGGCGA;CE=1.83056;CONSBP=63	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-22.2632,-293.957:10000:PASS:10196:20810:9239:2:0:0:101:3
+Chromosome	1752599	DEL00000015	G	<DEL>	114	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3528674;PE=8;MAPQ=15;CT=3to5;CIPOS=-525,525;CIEND=-525,525;gene=rpsA,tlyA,ndh,katG,PPE35,Rv1979c,pncA,kasA,eis,ahpC,folC,pepQ,ribD,Rv2752c,thyX,thyA,ald,fbiD,Rv3083,fprA;locus_tag=Rv1630,Rv1694,Rv1854c,Rv1908c,Rv1918c,Rv1979c,Rv2043c,Rv2245,Rv2416c,Rv2428,Rv2447c,Rv2535c,Rv2671,Rv2752c,Rv2754c,Rv2764c,Rv2780,Rv2983,Rv3083,Rv3106	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-2.44736,-216.756:24:PASS:588906:1146813:567367:2:38:8:0:0
+Chromosome	1983916	DEL00000016	C	<DEL>	36	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2638985;PE=6;MAPQ=6;CT=3to5;CIPOS=-498,498;CIEND=-498,498;gene=ndh,katG,PPE35,Rv1979c,pncA,kasA;locus_tag=Rv1854c,Rv1908c,Rv1918c,Rv1979c,Rv2043c,Rv2245	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-4.82883,-129.154:48:PASS:212940:414765:212900:2:22:6:0:0
+Chromosome	2108603	DEL00000017	CCGCCGGCGCCGGCACCGGCTCCTGCAGAGCCCGCTCCGG	C	240	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2108642;PE=0;MAPQ=0;CT=3to5;CIPOS=-14,14;CIEND=-14,14;SRMAPQ=60;INSLEN=0;HOMLEN=16;SR=4;SRQ=1;CONSENSUS=GTATGGCTCGGGACCGCCAACAACCCGGTGGACAAGGGCGCGGCCAAGGCGCTGGCCGAATCGATCCGGCCTTTGGTCGCCCCGCCGCCGGCGCCGGCCGGGGAAGTCGCTCCTACCCCGACGACACCGACACCGCAGCGGACCTTACCGGCCTGA;CE=1.83735;CONSBP=85	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-12.2797,0,-57.2732:123:PASS:1611:2076:1801:1:0:0:22:7
+Chromosome	2345119	DEL00000018	ACGGTCAGCGATCGCGTGCCAGGGCTGTCGGCGGCGATGGATGCGGTGATCGCCACTGCGATGGCCAAGGATCCCATGCGTCGGTTCACCTCAGCGGGTGAATTCGCACATGCCGCCGCCG	A	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2345239;PE=0;MAPQ=0;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SRMAPQ=60;INSLEN=0;HOMLEN=11;SR=2;SRQ=0.978571;CONSENSUS=GCTACTAACCGGTGAGGCGCCGTTTGCCGCCGGTGCTGGAGCGGCGGTGGCAGTGGTGGCGAGTCACCTGCACCAACCGCCGCCGACAGCCCTGTACGGGGGAGCCACCGACGGATGGGTGCCGCCGAGCCCCGCGCCGC;CE=1.82104;CONSBP=86	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-21.6557,-263.962:10000:PASS:9258:18068:7295:2:0:0:90:2
+Chromosome	2365410	DEL00000019	G	<DEL>	4980	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2366768;PE=63;MAPQ=60;CT=3to5;CIPOS=-6,6;CIEND=-6,6;SRMAPQ=60;INSLEN=0;HOMLEN=6;SR=20;SRQ=1;CONSENSUS=CACTTCGGCACGGACACGGCTCGTTCGACGGACGTCGTGACCAGAAGTCGAGCAAACCGACTCCACTCTAGCTAGTGATACAAGCTTTTTTGTAGCCGCGCGATTGGGCCGCCCGTAAGGAATGCGTCATGAGCGACTTCGCATCACGGGCGACCAATCATTAATTTGTCAAA;CE=1.99254;CONSBP=100	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-449.935,-45.0893,0:10000:PASS:377:14:376:0:9:63:0:150
+Chromosome	2375746	DEL00000020	TCGTCGGCGTGGCCGACGACCAGAGCCCGATGAC	T	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2375779;PE=0;MAPQ=0;CT=3to5;CIPOS=-8,8;CIEND=-8,8;SRMAPQ=60;INSLEN=0;HOMLEN=8;SR=2;SRQ=1;CONSENSUS=GAGGCCGTCTGGCAGGTCCTCGGCGATCAGGGGATCAGCCAGCCAAACAACGCGTTCCTCGTCGGCCAGGATCTCGCGCAAGGTGGATATCTCGCCGACCGCCTCGAA;CE=1.93251;CONSBP=59	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-12.657,-245.964:127:PASS:2495:4777:2353:2:0:0:87:5
+Chromosome	2381150	DEL00000021	TGCTGGCCGCGGCCAGGGCGTGGCACGC	T	118	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2381177;PE=0;MAPQ=0;CT=3to5;CIPOS=-11,11;CIEND=-11,11;SRMAPQ=60;INSLEN=0;HOMLEN=13;SR=2;SRQ=1;CONSENSUS=TGGCTGTCCACCGGCATGGGCCCCGGTCCGCTGCTGGCCGCGCAATACACCGAAATTGCAACGGAACTCGCAAGCGTGCTCGCTGCGG;CE=1.91293;CONSBP=32	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-21.0736,-329.952:10000:PASS:2608:5244:2498:2:0:0:115:5
+Chromosome	2387320	DEL00000022	CCGCCGCCGGCCCCGCCCTCGCCGCCGCTGCCCATGGCGCCGTGGGCGCCCGAGTGGCCACTGAGCCAGCCGCCCGCCCCGCCCGCGCCACCGGCACCGCGGGCACCTCCGG	C	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2387431;PE=0;MAPQ=0;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SRMAPQ=60;INSLEN=0;HOMLEN=12;SR=2;SRQ=1;CONSENSUS=TGCCGGGATTCGTGCCTGTCGACGTACCACCGCCGGCACCAGCCTCGCCGCGCGCACCGCCGCCGCCGCCGGTGCCACCATCGCCACCATCGCCGCCGTCACCGCCGCGGCCACCGAA;CE=1.73136;CONSBP=63	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-4.48976,0,-31.4859:45:PASS:2641:1851:398:1:0:0:12:3
+Chromosome	2430113	DEL00000023	T	<DEL>	4188	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2431471;PE=50;MAPQ=60;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=4;SR=20;SRQ=1;CONSENSUS=GGGCAAATGGGTGGCAAGTGGGGCCAAGTGGGGCACAACTGGGGCTCAAACCGGACTCAATATCGCCGACAGCCGGTGACGACCCGGCTGGGGCTTCCCGAGACTGCGATTCCCAAACGATGACGCCCAAACAAAAAGCGGGACCGCCGATGGCTGCCCCGCTGCCGCTGGTTGCGTTCGGCTTACTA;CE=1.9381;CONSBP=89	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-170.374,-17.1326,0:10000:PASS:327:0:421:0:0:50:0:57
+Chromosome	2535431	DEL00000024	C	<DEL>	3180	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2536141;PE=33;MAPQ=60;CT=3to5;CIPOS=-3,3;CIEND=-3,3;SRMAPQ=60;INSLEN=0;HOMLEN=3;SR=20;SRQ=1;CONSENSUS=GGGTTGCCAGCACAAATCCGCCCATACCCGTCCACGCCCGCAGCGCGCCCTCCCACGACGTCGGCGCGGCCCGCACCACTAACAGCAGTGGGACCAAGCAGGTCGTACGCCCCGATGACGGCCTATGGCCAGTCGAAGCTGGCGGTCTTGATGTTCGCCCGCGAGCTGGACCGCCGCAGCCGCGCGGC;CE=1.85796;CONSBP=99	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-461.933,-46.2917,0:10000:PASS:64980:116:70079:0:0:34:0:154
+Chromosome	2550008	DEL00000025	C	<DEL>	6120	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2551366;PE=82;MAPQ=60;CT=3to5;CIPOS=-7,7;CIEND=-7,7;SRMAPQ=60;INSLEN=0;HOMLEN=6;SR=20;SRQ=1;CONSENSUS=CGATGCGCGACAATCATCGGGTCGTCAGTCTGGCCCAGCGGCAAAGCATCCGCCACACCGCAAGTCCCTCCCAAGGCGATCACCAGCGCCACCGCGCCCAACATAGCCGTCTTCACCATCGGTCCCCTTCAGGCTTTCCCCACCGTAGAAACGTGCGCAATGCGCGGCGCA;CE=1.90112;CONSBP=89	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-479.93,-48.0953,0:10000:PASS:402:51:369:0:0:82:0:160
+Chromosome	2635551	DEL00000026	A	<DEL>	180	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2638985;PE=3;MAPQ=60;CT=3to5;CIPOS=-430,430;CIEND=-430,430	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-14.9897,0,-38.9897:150:PASS:500:680:921:1:7:3:0:0
+Chromosome	2729618	DEL00000027	CGGCCTCGTCGAGGTGTAGCCCTTCCCGACGCGCGGCGTACCAGACCCAGCGCAGAAACGTTGCCTGCGTTGGGCCTTCGTCGGCCGGTGATGTCAGCCTGACCGTCGTTCGATACTCGGCGGCTCCTCGGGCAATTGTGGCGGGCACGACCCCGGGCTTAACATGCGGTAGCGCGCTGGCAGCCCTGTTCAGCATGGCGCATACCTTGTCCGGG	C	1200	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2729832;PE=0;MAPQ=0;CT=3to5;CIPOS=-3,3;CIEND=-3,3;SRMAPQ=60;INSLEN=0;HOMLEN=2;SR=20;SRQ=0.99422;CONSENSUS=AGCCAGCGACTGCTGATCGCTAGAGCTCAGTCGCAGCTCGGGCCCCACCACCGTGCGCAGGGCGGACTCCACACGTTCGGCCGTCGAGAACTCGTCGTCGGATCGGACGTGGAAAATGTGGTCGTGATCGAGCATTCGTGCGCCCCGGCCGGCCGGCTGAGATTGGTAAAAGC;CE=1.93516;CONSBP=99	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-506.927,-50.8006,0:10000:PASS:20976:302:14539:0:0:0:0:169
+Chromosome	2784611	DEL00000028	T	<DEL>	5670	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2785969;PE=75;MAPQ=60;CT=3to5;CIPOS=-6,6;CIEND=-6,6;SRMAPQ=60;INSLEN=0;HOMLEN=5;SR=20;SRQ=1;CONSENSUS=CGGCGCGAATTGCTGGCCACCCGGAACTTGACGACCTCTTGATCACCGACTTTGCGGCGCTGCAAATCGTTGACGATGTGACCGACCACGGTCAGTGGCGTTTCGAACATTTGCTCATTCCTTTCCTAGTTGCGTTGGCACAGTTGCGTTGGCACCGGGTGATTCCGCGAACTGCCCACGCATATGC;CE=1.97451;CONSBP=92	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-395.943,-39.6786,0:10000:PASS:419:45:380:0:0:75:0:132
+Chromosome	2839459	DEL00000029	ACGCGCTCAACCAGCTCGCGAGCAGACGCAGAGTCGCATGAAAATCCGGATTTCGATGCGATTCTGCGTCTGCT	A	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2839532;PE=0;MAPQ=0;CT=3to5;CIPOS=-9,9;CIEND=-9,9;SRMAPQ=60;INSLEN=0;HOMLEN=8;SR=2;SRQ=0.992908;CONSENSUS=GCTCCTCGAGATCACACCGCACCGACGGCAACACCTCACGGACGCGCTCACGGGGCCTCCAGGATGGCGACCGCGGCCGCGGTATCCCCTTCGTGGGTCAGCGACAAATGGATCGTCACGTCGGCCAAATACTCAGCGATG;CE=1.91775;CONSBP=42	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-8.36556,0,-116.35:84:PASS:5269:5231:5375:1:0:0:44:8
+Chromosome	2863437	DEL00000030	TGGCCAGCGCGCGCGGCACCGTGGAGATCGGCTTCATC	T	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2863474;PE=0;MAPQ=0;CT=3to5;CIPOS=-3,3;CIEND=-3,3;SRMAPQ=60;INSLEN=0;HOMLEN=2;SR=2;SRQ=0.992424;CONSENSUS=CACGACCCCGGCCGCCGGCACCGCGCACACATCCGAGCGCTGATGGATGGCGACGGCCTCATCGCCGGTCGCCAGGTCGACGGTGCCGCGCGCACCCGCAGCGGCTGCCCGTTGGTCATCCCGCCTTCCAGC;CE=1.79864;CONSBP=84	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-22.2632,-293.957:10000:PASS:2637:5293:2730:2:0:0:101:3
+Chromosome	2972105	DEL00000031	T	<DEL>	4476	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=2973463;PE=55;MAPQ=60;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=5;SR=20;SRQ=1;CONSENSUS=TTTAAACGGTTGGAGCGGCTGACCGCCGGTGCCCGGGATGGGCCCCGGCGGCAACTTGTCCAACGGGCGACGCTCACGTCCACGCTTGCGCAGCTCATCTTCGGCGGCCTTGCGTGCCTGCTCAGCCTGGCGGCGCCAAGCCTCATAGCGACGCCGAATCTCCCTCTCAATCGCGCGCTGCACACCCATCCGGAAC;CE=1.90327;CONSBP=100	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-287.958,-28.8572,0:10000:PASS:399:35:355:0:0:57:0:96
+Chromosome	3007066	DEL00000032	CGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCAATCGAAGAT	C	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3007229;PE=0;MAPQ=0;CT=3to5;CIPOS=-5,5;CIEND=-5,5;SRMAPQ=60;INSLEN=0;HOMLEN=4;SR=2;SRQ=1;CONSENSUS=CTACCGCCGTTCGCGGGCGCTCCGGTGACCAACGTCAGATTCACTGCATCGTCGCCGGCGCGGGTCACTGGCGCCCCGTCACGTGTCACCGGGAGCCGCGTGCGGCTGTAACGTCTTGATCCGCTCCGACGACGTCAGTTGCCAAGGC;CE=1.89425;CONSBP=72	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-313.249,0,-57.0261:10000:PASS:14198:10628:15323:1:0:0:35:126
+Chromosome	3007119	DEL00000033	CGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCAATCGAAGAT	C	117	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3007229;PE=0;MAPQ=0;CT=3to5;CIPOS=-5,5;CIEND=-5,5;SRMAPQ=45;INSLEN=0;HOMLEN=4;SR=4;SRQ=1;CONSENSUS=CATCGTCGCCGGCGCGGGTCACTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGGCGCGGGTCACTGGCGCCCCGTCACGTGTCACCGGGAGCCGCGTGCGGCTGTAACGTCTTGATCCGCTCCGACGACGTCAGTTGCCAAG;CE=1.85634;CONSBP=79	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-331.205,-9.14062,0:91:PASS:4985:5898:9720:1:0:0:11:128
+Chromosome	3037359	DEL00000034	CCGGGGCGCGCCAGCCGCTGCGAGCGTAACGCCACGGCGAGCTTGCGTGCACCGAATTCGCCGTGGCGTTACGCT	C	180	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3037433;PE=0;MAPQ=0;CT=3to5;CIPOS=-9,9;CIEND=-9,9;SRMAPQ=60;INSLEN=0;HOMLEN=9;SR=3;SRQ=0.993289;CONSENSUS=TGGTGGCACTGCCCATGGATGCCCTCCGGGGAAGAAAATTCTGGTGCCCAACAATACCAACCGGGCGGTTGGTCGGCAGGTAGCCGCGGCGCGAACTCGCGCAAGGTGGCAGCCAGCGCCTCCGGGACACGGGCCTTGATCCGGGTGCC;CE=1.90954;CONSBP=84	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-0.582023,0,-66.5725:7:LowQual:3996:3502:3193:1:0:0:25:3
+Chromosome	3551226	DEL00000035	T	<DEL>	3240	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3552584;PE=34;MAPQ=60;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=3;SR=20;SRQ=0.994118;CONSENSUS=TATCCTTAGCTATGCGCATGTTCCCAAAAGTGTTCCCGCCCATGAAAACGGCCCCCGGAGTCTCCTCCGAGGGCCATTTCGCCGGTAGCGGGGACAGGATTCGAACCTGCGACCTCTGGGTTATGAGCTAACCAGTCGCAATCTCTCCCATCGCGGTCGGTCTCATACGT;CE=1.97469;CONSBP=101	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-422.538,-42.3833,0:10000:PASS:526:0:57:0:0:34:0:141
+Chromosome	3551231	DEL00000036	G	<DEL>	2040	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3554067;PE=34;MAPQ=60;CT=3to5;CIPOS=-289,289;CIEND=-289,289	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-204,-10.235,0:102:PASS:1041:57:1131:0:0:34:0:0
+Chromosome	3552709	DEL00000037	G	<DEL>	4166	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3554067;PE=50;MAPQ=60;CT=3to5;CIPOS=-5,5;CIEND=-5,5;SRMAPQ=60;INSLEN=0;HOMLEN=4;SR=20;SRQ=1;CONSENSUS=AACCAGTCGCAATCTCTCCCATCGCGGTCGGTCTCATACGTCCAGATCAGCCTCTATTCCGCCGTCCAGCCTGTTCCGCCGCGTCGCGGTTGTACGGATTCGTTTCGGCCTGTTCTGTTCCCAAATCCGTTCCCAACACAGCAATCAGCAGCAATCCCAGGCCGAAATCGGTCAGACTCTTGGTGGAC;CE=1.9585;CONSBP=97	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-446.935,-44.7887,0:10000:PASS:57:0:500:0:0:50:0:149
+Chromosome	3663727	DEL00000038	ACCTGTGAGTCGAGTGAGCGGAACGAACGAAGTGAGTGACGGGAACGAGACGAACAATCCGGCAGAAGTGAGTGACGGGAACGAGACGAACAATCCGGCAGAAGTGAGTGACGGGAACGAGACGAACAATCCGGCC	A	73	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3663862;PE=0;MAPQ=0;CT=3to5;CIPOS=-63,63;CIEND=-63,63;SRMAPQ=27;INSLEN=0;HOMLEN=62;SR=3;SRQ=1;CONSENSUS=GCCCAAAAAGCATGGGAACGTGCCCCTGTGAGTCGAGTGAGCGGAACGAACCTGTGAGTCGAGTGAGCGGAACGAACGAAGTGAGTGACGGGAACGAGACGAACAATCCGGCCCCTGTGAGTCGAGTGAGCGGAACGAACGAAGTGAGTG;CE=1.90282;CONSBP=50	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-57.5329,-3.5551,0:36:PASS:11752:3121:1973:0:0:0:1:21
+Chromosome	3737291	DEL00000039	T	<DEL>	120	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3738292;PE=2;MAPQ=60;CT=3to5;CIPOS=-501,501;CIEND=-501,501	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-7.16293,0,-187.163:72:PASS:193:220:101:1:33:3:0:0
+Chromosome	3737445	DEL00000040	AGCCGCCCTTGCCGCCGAAAAAGCCGCTGCCGCCGGCGCCGCCGGCGCCGCCGCCACCGCCGCTGCCGCCTTGGGTGACGGAGCTGTTGCCGCCGACGCCGTCACCGCCGTGGCCACCGTCGCCGCCCTTGCCGCCCTCGCCGGAGCTAAGGCTGCCGTTTCCGCCGGCGCCGCCAGCGCCACCGGCCCCACCGGAACCGCCGACGATGCCGCTGTTGGCGCCGATCGAGCCCCCGTTGCCGCCGGCACCGCCGTTGCCGCCCTTGCCGCCGTCGCCACCTGAGCCGTTGGGGTTGCTGCCACCGGC	A	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3737751;PE=0;MAPQ=0;CT=3to5;CIPOS=-17,17;CIEND=-17,17;SRMAPQ=60;INSLEN=0;HOMLEN=16;SR=2;SRQ=1;CONSENSUS=CCGCCGTTGGGGCCGCCCTGACCGCCGTCGCCGCCGAAGCCGCCCTTGCCGCCGTTGCCGCCGGGGGCGCCCGTGACCCCGATGGAGGCGGGGCCGCTGGTAGCGCCGAAGCTCCCATCACCGCCATTGCCACCGGCGCCGCC;CE=1.71722;CONSBP=38	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-9.03064,-137.98:90:PASS:10984:16771:10498:2:0:0:48:2
+Chromosome	3737466	DEL00000041	AGCCGCTGCCGCCGGCGCCGCCGGCGCCGCCGCCACC	A	1200	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3737502;PE=0;MAPQ=0;CT=3to5;CIPOS=-13,13;CIEND=-13,13;SRMAPQ=60;INSLEN=0;HOMLEN=12;SR=20;SRQ=1;CONSENSUS=CCGTTGCCGCCGCCACCGGCCACGGTGCCGACGGTACCGCCGCCGTTGGGGCCGCCCTGACCGCCGTCGCCGCCGAAGCCGCCCTTGCCGCCGAAAAAGCCGCTGCCGCCTTGGGTGACGGAGCTGTTGCCGCCGACGCCGTCACCGCCGTGGCCACCGTCGCCGCCCTTGCCGCCCTCGCCGGAGCTAAGG;CE=1.76286;CONSBP=98	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-164.976,-16.5328,0:10000:PASS:886:269:617:0:0:0:0:55
+Chromosome	3795054	DEL00000042	T	<DEL>	6840	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3796412;PE=94;MAPQ=60;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=3;SR=20;SRQ=1;CONSENSUS=CACTGTTTCTATGAGCCGCCGACGCATCTGCACGGCCAGCTCTGGCAGCTGGCTTTCGGGCAATGCCTGCACATCGCAAGGTCCGCCGATCGCGGTAATCAAGTCCCCGCGTCCGTTGCGAATCGTGGTTGTCATTGCGCGCGAACCTGTTTGGGAAGGCCGAATCGCACC;CE=1.95704;CONSBP=96	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-524.924,-52.6042,0:10000:PASS:581:29:484:0:0:94:0:175
+Chromosome	3890775	DEL00000043	G	<DEL>	7258	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3892133;PE=101;MAPQ=60;CT=3to5;CIPOS=-4,4;CIEND=-4,4;SRMAPQ=60;INSLEN=0;HOMLEN=4;SR=20;SRQ=1;CONSENSUS=GCTGCGGCCCGACCCCATGAGCGTCGCGTCTGTCCACCGCCATGCAAGAACACCACGGCACGCGCTCGCGGGTCTCCCAAGCGGTCGGCGACGATACGGACACCGCCCGGCCCGTGGACCGAGAACGATTCAGCTGCCATTGATATCGGGTCCATCAGGGGAT;CE=1.90768;CONSBP=98	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-587.915,-58.9167,0:10000:PASS:457:0:593:0:0:101:0:196
+Chromosome	3927522	DEL00000044	AGGCGGCCAAGGCGGCGACGGCGGCACCGGAGGGGCCGGCGGCGCAGGCCCAGTGCTGTTCGGCCACGGCGGCGCCGGCGGCATG	A	1080	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3927606;PE=0;MAPQ=0;CT=3to5;CIPOS=-17,17;CIEND=-17,17;SRMAPQ=60;INSLEN=0;HOMLEN=16;SR=18;SRQ=1;CONSENSUS=GGGTTGTTCATGAACGGCGGCGACGGCGGCGCCGGCGGTCAAGGCGGCGACGGTGCGGCCGGCGACGCGGCTGCCAGCGCCGGCGGCACCGGCGGCAAAGGCGGCCAAGGCGGCACCGGTGGAATGGGCGGCGCCGGCGGAGACGGCACCACCGTCATCGCGGCCGGTACCGGGGGGGAGG;CE=1.70241;CONSBP=99	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-147.768,-15.0196,0:150:PASS:1802:929:1360:1:0:0:0:50
+Chromosome	3936503	DEL00000045	CGGCGCCGGCGGCAACGGCGGCTCTGCCACCGGCGTCGGTAACGGCGGTAACGGCGGTGATGGCGGCAACGGCGGCGACGGCGGCAACGGCGCACCCGGCGGCTTCGGTGGCGGCGCT	C	600	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3936620;PE=0;MAPQ=0;CT=3to5;CIPOS=-13,13;CIEND=-13,13;SRMAPQ=60;INSLEN=0;HOMLEN=14;SR=10;SRQ=0.994792;CONSENSUS=CGCCAACGGCGGAGCCGGCGGTGCCGGGGGAACGCCCACCGGCAGTGGCACCGAGGGGACCGGCGGCGACGGTGGAGATGCCGGCGCCGGCGGCTTGGGCGGCTCCGGCGCCGGCGGCGGCACCGACGGCGACGACGGCAACGGCGGCAGCCCCGGCACCGACGGCAGCTAAGCTAACGGCAGCCCAAAGCG;CE=1.68535;CONSBP=82	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-128.981,-12.9256,0:129:PASS:2075:512:2927:0:0:0:0:43
+Chromosome	3941342	DEL00000046	ACCGGCGGCACCGGCGGCAACGCCGGCG	A	57	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=3941369;PE=0;MAPQ=0;CT=3to5;CIPOS=-14,14;CIEND=-14,14;SRMAPQ=45;INSLEN=0;HOMLEN=17;SR=2;SRQ=0.992188;CONSENSUS=GCTGCTAGCCGCCCAAGACGGCGGCCAAGGCGGCACCGGCGGCGCCGGCTTCACCCAAGGCGCCGACGGCAACGCCGGCAACGGCGGTGACGGCGGGGTCGGCGGCAACGGCGGAAACGGCGCAGACA;CE=1.71832;CONSBP=35	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-11.0199,-134.308:110:PASS:1487:3477:2192:2:0:0:63:4
+Chromosome	4008648	DEL00000047	GGCGACGGCGAGCAGACGCAAAATCGCCCAACACGCCCGCAAAATGGGCGATTTT	G	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=4008702;PE=0;MAPQ=0;CT=3to5;CIPOS=-5,5;CIEND=-5,5;SRMAPQ=60;INSLEN=0;HOMLEN=4;SR=2;SRQ=0.993151;CONSENSUS=CATATTCGCCATCCGCGAGGACAGCTGCCCCAACCACGCGACATACCGGACGTGGCTCACCAGACTGCTTACCGGCGTCTGCTCGCGCCACTAGAGCCAGGTGTCCTGGGTGGTGGTGGTGAGGAAAGCCTCCAGGTCGTCGCGCC;CE=1.93206;CONSBP=74	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-5.68576,0,-44.6801:57:PASS:3866:2232:2274:1:0:0:17:4
+Chromosome	4061782	DEL00000048	GGCCAGCGCCTCCCAGGCCGCCGCGGCA	G	180	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=4061809;PE=0;MAPQ=0;CT=3to5;CIPOS=-7,7;CIEND=-7,7;SRMAPQ=60;INSLEN=0;HOMLEN=10;SR=3;SRQ=0.992248;CONSENSUS=CGACGGCCAGGCCAGTGATCAGAGCGTCGTAGGTGGACGCCGTGGTTTGCAACTCGGCGGCCAGCATCGGTCCCGAACCGGGTCCGGCGTACATCAGCGCGGAGTTGACCTCCGGCGGTAACTGAGCAA;CE=1.92059;CONSBP=59	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-23.1778,-350.949:10000:PASS:2412:4792:2527:2:0:0:122:5
+Chromosome	4221175	DEL00000049	TGCCGAGGTGGCCGCCGGCGCCCGCCGCCTGTCAGCGATCGCCGAACTCACCAGCCGGCGCACCGGCAATGACCAGCGGGCCGACTGGGCGTGCGACGGCTGGGACTGCGCGGCC	T	120	LowQual	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=4221289;PE=0;MAPQ=0;CT=3to5;CIPOS=-17,17;CIEND=-17,17;SRMAPQ=60;INSLEN=0;HOMLEN=16;SR=2;SRQ=1;CONSENSUS=ATGCCGACGATGCCGCGCTGCTTGCCGCAATCGAGGACTGCGCGCGTGCCGAGGTGGCCGCCGCACTGACCGTAAGCCACCGTAAGGCCTCCGGGCAGATGCATCTGA;CE=1.90695;CONSBP=47	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/0:0,-29.7845,-392.943:10000:PASS:12751:23625:10853:2:0:0:135:4
+Chromosome	4231859	DEL00000050	CGCGGTCTGTGCGCCGGGCGCACGCACCGAATTCGAGCTATTAGCGGCCGCGGCAAGGGACGCATTCGGCCTGGACGTCCACCCAGCGGT	C	1200	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.8;END=4231948;PE=0;MAPQ=0;CT=3to5;CIPOS=-14,14;CIEND=-14,14;SRMAPQ=60;INSLEN=0;HOMLEN=18;SR=20;SRQ=1;CONSENSUS=GGCCCGCTGGGCCCGGGAATTGGCAAAGGGTCGCCAGGTTGGTCACATCGTGCTCGCCGCCGCATCGCGTCGATTGCTGCCCTCCGAGGATGACGCGGTCGCGGTATGTGCGCCAGCGGGACGACAACCCGCACCGGGACAGCATGGTGTGGCGCTTCGCCGCCGACACCAATGACCTAGG;CE=1.89818;CONSBP=100	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	1/1:-404.941,-40.5804,0:10000:PASS:6338:1311:6837:0:0:0:0:135
diff --git a/tests/fixtures/mtuberculosis/converged_who_fohm_tbdb.bed.gz b/tests/fixtures/mtuberculosis/converged_who_fohm_tbdb.bed.gz
new file mode 100644
index 0000000..168f5ff
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diff --git a/tests/fixtures/mtuberculosis/converged_who_fohm_tbdb.bed.gz.tbi b/tests/fixtures/mtuberculosis/converged_who_fohm_tbdb.bed.gz.tbi
new file mode 100644
index 0000000..77c0847
Binary files /dev/null and b/tests/fixtures/mtuberculosis/converged_who_fohm_tbdb.bed.gz.tbi differ
diff --git a/tests/fixtures/mtuberculosis/delly.bcf b/tests/fixtures/mtuberculosis/delly.bcf
new file mode 100644
index 0000000..4e90052
Binary files /dev/null and b/tests/fixtures/mtuberculosis/delly.bcf differ
diff --git a/tests/test_cli.py b/tests/test_cli.py
index 048da8c..f97d02b 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -4,7 +4,7 @@
 
 from click.testing import CliRunner
 
-from prp.cli import create_bonsai_input, create_cdm_input
+from prp.cli import create_bonsai_input, create_cdm_input, annotate_delly
 
 
 def test_create_output_saureus(
@@ -160,6 +160,36 @@ def test_cdm_input_cmd(
             assert cmd_output == ecoli_cdm_input
 
 
+def test_annotate_delly(
+    mtuberculosis_delly_bcf_path, converged_bed_path, annotated_delly_path
+):
+    """Test command for annotating delly output."""
+    runner = CliRunner()
+    with runner.isolated_filesystem():
+        sample_id = "test_mtuberculosis_1"
+        output_fname = f"{sample_id}_annotated_delly.vcf"
+        result = runner.invoke(
+            annotate_delly,
+            [
+                "--vcf",
+                mtuberculosis_delly_bcf_path,
+                "--bed",
+                converged_bed_path,
+                "--output",
+                output_fname,
+            ],
+        )
+
+        # test successful execution of command
+        assert result.exit_code == 0
+
+        # test correct output format
+        with open(output_fname, "r", encoding="utf-8") as test_annotated_delly_output, \
+            open(annotated_delly_path, "r", encoding="utf-8") as annotated_delly_output:
+            test_contents = test_annotated_delly_output.read()
+            expected_contents = annotated_delly_output.read()
+            assert test_contents == expected_contents
+
 
 def test_create_output_mtuberculosis(
     mtuberculosis_analysis_meta_path,