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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(.CCbyGenes,ArchRProject)
S3method(.CCbyGenes,Seurat)
S3method(.CCbyPeaks,ArchRProject)
S3method(.CCbyPeaks,Seurat)
S3method(.addMojitooAssay,ArchRProject)
S3method(.addMojitooAssay,Seurat)
S3method(ATACTrack,Seurat)
S3method(GeneCCDimPlot,ArchRProject)
S3method(GeneCCDimPlot,Seurat)
S3method(GeneCCHeatmap,ArchRProject)
S3method(GeneCCHeatmap,Seurat)
S3method(getCellCol,ArchRProject)
S3method(getCellCol,Seurat)
S3method(getDimRed,ArchRProject)
S3method(getDimRed,Seurat)
S3method(getMatrix,ArchRProject)
S3method(getMatrix,Seurat)
S3method(mojitoo,ArchRProject)
S3method(mojitoo,Seurat)
S3method(setCellCol,ArchRProject)
S3method(setCellCol,Seurat)
S3method(setDimRed,ArchRProject)
S3method(setDimRed,Seurat)
S3method(setMatrix,ArchRProject)
S3method(setMatrix,Seurat)
export(ATACTrack)
export(CCA)
export(ConsensusNMF)
export(GeneCCDimPlot)
export(GeneCCHeatmap)
export(getCellCol)
export(getDimRed)
export(getMatrix)
export(install.pymetis)
export(mojitoo)
export(mojitoo_Matrix)
export(setCellCol)
export(setDimRed)
export(setMatrix)
importFrom(ArchR,getArrowFiles)
importFrom(ArchR,getAvailableMatrices)
importFrom(ArchR,getReducedDims)
importFrom(ArchR,plotEmbedding)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(Gviz,DataTrack)
importFrom(Gviz,GeneRegionTrack)
importFrom(Gviz,GenomeAxisTrack)
importFrom(Gviz,plotTracks)
importFrom(Matrix,rankMatrix)
importFrom(Matrix,t)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,elementMetadata)
importFrom(Seurat,Assays)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,FeaturePlot)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,ScaleData)
importFrom(assertthat,assert_that)
importFrom(circlize,colorRamp2)
importFrom(corpcor,make.positive.definite)
importFrom(cowplot,get_legend)
importFrom(dplyr,`%>%`)
importFrom(fda,geigen)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(glue,glue)
importFrom(grid,grid.draw)
importFrom(grid,grid.grabExpr)
importFrom(grid,grid.layout)
importFrom(grid,grid.newpage)
importFrom(grid,grid.rect)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(patchwork,wrap_plots)
importFrom(pbapply,pblapply)
importFrom(ramify,argmax)
importFrom(rhdf5,h5write)
importFrom(stringr,str_starts)
importFrom(tidyr,separate)