From c8b1c3e0578330abf095983056d476ac9d376bc3 Mon Sep 17 00:00:00 2001 From: Adam Youlin He Date: Mon, 19 Dec 2022 22:46:53 -0500 Subject: [PATCH] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 4a036a7..13ef6f0 100644 --- a/README.md +++ b/README.md @@ -1,11 +1,11 @@ -# Proseq2.0_mt +# Proseq2.0 Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing. It is a new version of ProseqMapper (https://github.com/Danko-Lab/utils/tree/master/proseq). Currently we provide two commands: proseq mapper and bigWig merge. # MULTITHREADING: -This is a fork of the original [proseq2.0](https://github.com/Danko-Lab/proseq2.0.git) repo. This package 1) multithreads cutadapt and 2) executes all commands in `./proseq2.0.bsh` sequentially in the main shell (no farming out commands to the background with `&`. This should fix an issue in the original proseq2.0 where the script would randomly hang. +This is a fork of the original [proseq2.0](https://github.com/Danko-Lab/proseq2.0.git) repo. This package 1) multithreads cutadapt and 2) executes all commands in `./proseq2.0.bsh` sequentially in the main shell (no farming out commands to the background with `&`. This should fix an issue in the original proseq2.0 where the script would randomly hang on the `wait` lines. ## Overview Our proseq2.0 pipeline will take single-end or paired-end sequencing reads in fastq.gz format as input. The pipeline will automate three routine pre-processing and alignment options, including