Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Additional toolkit required #9

Open
Error-fre opened this issue Feb 26, 2024 · 1 comment
Open

Additional toolkit required #9

Error-fre opened this issue Feb 26, 2024 · 1 comment

Comments

@Error-fre
Copy link

I encountered this error: "sort-bed is required. Please make sure you can call the bioinformatics tools from your current working directoryb. Aborting."
I wonder if you can update dependencies list if it's necessary. Thanks.

@adamyhe
Copy link
Contributor

adamyhe commented Mar 1, 2024

sort-bed is available through bedops, so installing that should fix things. We could probably get away with using bedtools sort, but I think it's safer to just add bedops to the dependencies list.

edmundmiller added a commit to nf-core/nascent that referenced this issue Mar 29, 2024
CBA to add another dependency
Danko-Lab/proseq2.0#9
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants