Welcome to DeepSqueak Discussions! #118
Replies: 9 comments 4 replies
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Hi, I am new to deepsqueak, but a former lab member has used it. However, she is no longer here, so I am mining to figure out how she generated her data. I was able to launch the program through matlab, but the neural network she used is not available in the dropdown. I would like to know how to get "Short Rat Call_Network_V2.mat." If you could direct me to the downloadable file I would so greatly appreciate it! |
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In fact, all files in the neural network folder are missing so I am unable to generate any data from my audio files. |
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Are you looking for the standard networks that come with DeepSqueak or was this a new network trained by the former lab member? |
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Hey @ande4808 sorry for the very slow reply. The old neural networks aren't compatible with the new version of DeepSqueak. I would recommend just using the new version 3.0 networks, they tend to work a bit better than the old ones. You can also download the final stable release of DeepSqueak v2.6 here: https://github.com/DrCoffey/DeepSqueak/releases/tag/V2.6.2 That has the old networks you are looking for. |
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Thank you very much for your response! We have all but given up as our
undergrad was the spearhead for this project and has since left the lab. I
will try this new version with the hopes that the network for "short rat
call_network_V2.mat" is there. I appreciate your help.
Sincerely,
Kate Root
***@***.***
University of Minnesota Duluth-Medical School
Biomedical Sciences
Dr. Jean Regal
…On Thu, Mar 10, 2022 at 3:41 PM DrCoffey ***@***.***> wrote:
Hey @ande4808 <https://github.com/ande4808> sorry for the very slow
reply. The old neural networks aren't compatible with the new version of
DeepSqueak. I would recommend just using the new version 3.0 networks, they
tend to work a bit better than the old ones. You can also download the
final stable release of DeepSqueak v2.6 here:
https://github.com/DrCoffey/DeepSqueak/releases/tag/V2.6.2
That has the old networks you are looking for.
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Hello,
I was successful in opening the older version of DeepSqueak to utilize the
older neural networks. Now, I've run into a new problem! How do I open a
saved session in DeepSqueak? I have all the files for the saved sessions,
but I'm not sure how to actually open them again and view what was
previously saved. Can you give me some step by step instructions on how to
open those files?
Thank you for your time!
Kate Root
***@***.***
…On Thu, Mar 10, 2022 at 3:41 PM DrCoffey ***@***.***> wrote:
Hey @ande4808 <https://github.com/ande4808> sorry for the very slow
reply. The old neural networks aren't compatible with the new version of
DeepSqueak. I would recommend just using the new version 3.0 networks, they
tend to work a bit better than the old ones. You can also download the
final stable release of DeepSqueak v2.6 here:
https://github.com/DrCoffey/DeepSqueak/releases/tag/V2.6.2
That has the old networks you are looking for.
—
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<#118 (reply in thread)>,
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Hello! Thanks for creating such a wonderful program. I have been using it for the past couple of weeks and just have a quick question about syntax analysis plots: Is it possible to change the order of the nodes so that the call categories line up across plots? Right now, the syntax analysis plot switches two of my call categories for male and female mice as I'm trying to compare across 4 groups. Any assistance would be much appreciated :) |
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Hey @yichiz123 I haven't used that feature in a while, but if you are comfortable with coding you can pause and debug in the SyntaxAnalysis_callback.m file. You might be able to sort the labels before plotting to keep them in the same order? Maybe add cats=sort(cats,'descend'); to line 68. Sorry I don't have time to play with it right now. |
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How do I open a saved session in DeepSqueak? I have all the files for the saved sessions, but I'm not sure how to actually open them again and view what was previously saved. Can you give me some step by step instructions on how to open those files? |
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Just select the saved detection file in the dropdown menu and then hit "load calls" If they aren't in the default folder, first hit File-Select Detection Folder and choose the correct folder. |
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Oh yes, thank you! I see now. I appreciate you replying to my message.
…On Tue, Jun 7, 2022 at 2:22 PM DrCoffey ***@***.***> wrote:
Just select the saved detection file in the dropdown menu and then hit
"load calls"
If they aren't in the default folder, first hit File-Select Detection
Folder and choose the correct folder.
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@DrCoffey, Thank you so much! I just did sort(cats) and it worked :)
…On Tue, Jun 7, 2022 at 2:49 PM DrCoffey ***@***.***> wrote:
Hey @yichiz123 <https://github.com/yichiz123> I haven't used that feature
in a while, but if you are comfortable with coding you can pause and debug
in the SyntaxAnalysis_callback.m file. You might be able to sort the labels
before plotting to keep them in the same order?
Maybe add cats=sort(cats,'descend'); to line 68.
Sorry I don't have time to play with it right now.
—
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<#118 (comment)>,
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Yichi Zhang
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Hi, Thanks!
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👋 Welcome!
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