modules.json

{
  "name": "nf-core/ampliconpipeline",
  "homePage": "https://github.com/nf-core/ampliconpipeline",
  "repos": {
    "git@github.com:EBI-Metagenomics/nf-modules.git": {
      "modules": {
        "ebi-metagenomics": {
          "assessmcpproportions": {
            "branch": "main",
            "git_sha": "2c10a5c506ad200076d5fcc4581feb340e351e2f",
            "installed_by": ["reads_qc"]
          },
          "cmsearchtbloutdeoverlap": {
            "branch": "main",
            "git_sha": "696324c637a7e0cf06fe331faffee42e36826898",
            "installed_by": ["modules", "rrna_extraction"],
            "patch": "modules/ebi-metagenomics/cmsearchtbloutdeoverlap/cmsearchtbloutdeoverlap.diff"
          },
          "cutadapt": {
            "branch": "main",
            "git_sha": "09af8ca976af68d2b82da95eb62416a10ed75613",
            "installed_by": ["modules"],
            "patch": "modules/ebi-metagenomics/cutadapt/cutadapt.diff"
          },
          "easel/eslsfetch": {
            "branch": "main",
            "git_sha": "f1bf089cb679ca1e363aa81c99a512114402472c",
            "installed_by": ["rrna_extraction"]
          },
          "extractcoords": {
            "branch": "main",
            "git_sha": "c249cf1afd1b7ceaacde6ba44fd9c919bf688c6d",
            "installed_by": ["rrna_extraction"],
            "patch": "modules/ebi-metagenomics/extractcoords/extractcoords.diff"
          },
          "fastp": {
            "branch": "main",
            "git_sha": "d4edb49a9072e8dcfd0fd4bfb85be6c005f86409",
            "installed_by": ["reads_qc"]
          },
          "fastqsuffixheadercheck": {
            "branch": "main",
            "git_sha": "67a02223d9bd9f38750255250035dc1a8da0b5db",
            "installed_by": ["reads_qc"]
          },
          "infernal/cmsearch": {
            "branch": "main",
            "git_sha": "62e22fb1fd131d27ed043f305f317a0cf741b900",
            "installed_by": ["modules", "rrna_extraction"]
          },
          "krona/ktimporttext": {
            "branch": "main",
            "git_sha": "172e93318ac2e2db5f9885b07ffb80443e67848a",
            "installed_by": ["mapseq_otu_krona"],
            "patch": "modules/ebi-metagenomics/krona/ktimporttext/krona-ktimporttext.diff"
          },
          "mapseq": {
            "branch": "main",
            "git_sha": "1375e8b3072c40346eb4f7d9c1ae15459c07b620",
            "installed_by": ["mapseq_otu_krona"]
          },
          "mapseq2biom": {
            "branch": "main",
            "git_sha": "fe16b0221649bc7ca3bfa69f722e8a89fab1de16",
            "installed_by": ["mapseq_otu_krona"],
            "patch": "modules/ebi-metagenomics/mapseq2biom/mapseq2biom.diff"
          },
          "seqfu/check": {
            "branch": "main",
            "git_sha": "d1f512bffa29ba7a89468ce29e0153e11b57cc94",
            "installed_by": ["reads_qc"]
          },
          "seqtk/seq": {
            "branch": "main",
            "git_sha": "d4edb49a9072e8dcfd0fd4bfb85be6c005f86409",
            "installed_by": ["reads_qc"]
          }
        }
      },
      "subworkflows": {
        "ebi-metagenomics": {
          "mapseq_otu_krona": {
            "branch": "main",
            "git_sha": "cc01ecb29008656fce3b4899a588c3c8b79547d4",
            "installed_by": ["subworkflows"]
          },
          "reads_qc": {
            "branch": "main",
            "git_sha": "c6917c7d1ae059968317c6315f503a6e85d7aa2e",
            "installed_by": ["subworkflows"]
          },
          "rrna_extraction": {
            "branch": "main",
            "git_sha": "29fd1389152934e9ca5da16d4637fee44764d25d",
            "installed_by": ["subworkflows"]
          }
        }
      }
    },
    "https://github.com/nf-core/modules.git": {
      "modules": {
        "nf-core": {
          "bedtools/maskfasta": {
            "branch": "master",
            "git_sha": "8fc1d24c710ebe1d5de0f2447ec9439fd3d9d66a",
            "installed_by": ["modules"],
            "patch": "modules/nf-core/bedtools/maskfasta/bedtools-maskfasta.diff"
          },
          "custom/dumpsoftwareversions": {
            "branch": "master",
            "git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543",
            "installed_by": ["modules"]
          },
          "fastp": {
            "branch": "master",
            "git_sha": "d497a4868ace3302016ea8ed4b395072d5e833cd",
            "installed_by": ["modules"]
          },
          "multiqc": {
            "branch": "master",
            "git_sha": "19ca321db5d8bd48923262c2eca6422359633491",
            "installed_by": ["modules"]
          },
          "seqtk/subseq": {
            "branch": "master",
            "git_sha": "8fc1d24c710ebe1d5de0f2447ec9439fd3d9d66a",
            "installed_by": ["modules"],
            "patch": "modules/nf-core/seqtk/subseq/seqtk-subseq.diff"
          }
        }
      }
    }
  }
}