From 758b2db88e754842264454e7129d2e622fd0809c Mon Sep 17 00:00:00 2001
From: James McLaughlin <james@mclgh.net>
Date: Fri, 8 Nov 2024 01:35:12 +0000
Subject: [PATCH] skip json values when using defining ontology curie

---
 dataload/linker/src/main/java/LinkerPass2.java | 1 +
 1 file changed, 1 insertion(+)

diff --git a/dataload/linker/src/main/java/LinkerPass2.java b/dataload/linker/src/main/java/LinkerPass2.java
index 6c2878ed..698e1f56 100644
--- a/dataload/linker/src/main/java/LinkerPass2.java
+++ b/dataload/linker/src/main/java/LinkerPass2.java
@@ -169,6 +169,7 @@ private static void writeEntityArray(JsonReader jsonReader, JsonWriter jsonWrite
                 if(name == "curie") {
                     if(curie != null) {
                         // use the defining ontology curie
+                        jsonReader.skipValue();
                         jsonWriter.value(curie);
                     } else {
                         // fallthrough to using the curie from rdf2json