README.md

Citation_list_generator

A tool to generate citation with link for reference in PubMed

Input

Step 1 Save citation to csv file

You will have a SAVE_CITATION.csv with following format:

PMID	Title	Authors	Citation	First Author	Journal/Book	Publication Year	Create Date	PMCID	NIHMS ID	DOI

Step 2 Run the code with the csv

Field	Description
csv_pubmed_loc	The location of csv you get from pubmed save citation in step 1
save_references_name	The name of saved docx file will be save_references_name.docx or save_references_name_{year}.docx if seperate_in_year = TRUE
bold_Authors	The Author you want to bold highlight; The order of entry with those authors as first author/ last author will move up in list
seperate_in_year	if TRUE, will generate a list of docx file with save_references_name_{year}.docx; if FALSE, one save_references_name.docx will be generated
citation.font	font of the citation
citation.font.size	font size of the citation
citation.link.color	hyperlink color of the citation

csv_pubmed_loc = "SAVE_CITATION.csv"
bold_Authors <-
  c("Author A", "Author B")
save_references_name = "referece"
get_citation_doc(
  csv_pubmed_loc,
  save_references_name,
  bold_Authors,
  seperate_in_year = FALSE,
  citation.font = "Garamond",
  citation.font.size = 12,
  citation.link.color = "blue"
)

Output

Author B, Author C, Title. Citation. PubMed PMID: PMID; PubMed Central PMCID: PMCID