You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Consensus column annotation in Pfam is on a #=GC seq_cons line. Easel expects reference annotation on a #=GC RF line. The Pfam seq_cons lines are handled by Easel as "unparsed annotation", which is usually fine. An example where it's not fine is in esl_msa_SequenceSubset(), which only propagates recognized GC annotations, not unparsed ones, for fear of propagating annotation that would not be valid for a subsetted alignment. Elena and Grey ran across this.
The text was updated successfully, but these errors were encountered:
Consensus column annotation in Pfam is on a #=GC seq_cons line. Easel expects reference annotation on a #=GC RF line. The Pfam seq_cons lines are handled by Easel as "unparsed annotation", which is usually fine. An example where it's not fine is in esl_msa_SequenceSubset(), which only propagates recognized GC annotations, not unparsed ones, for fear of propagating annotation that would not be valid for a subsetted alignment. Elena and Grey ran across this.
The text was updated successfully, but these errors were encountered: