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# TPOT API
## Classification
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# Citing TPOT
If you use TPOT in a scientific publication, please consider citing at least one of the following papers:
diff --git a/docs/legacy/contributing.md b/docs/legacy/contributing.md
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# Contribution Guide
We welcome you to [check the existing issues](https://github.com/EpistasisLab/tpot/issues/) for bugs or enhancements to work on. If you have an idea for an extension to TPOT, please [file a new issue](https://github.com/EpistasisLab/tpot/issues/new) so we can discuss it.
diff --git a/docs/legacy/examples.md b/docs/legacy/examples.md
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# Overview
The following sections illustrate the usage of TPOT with various datasets, each
diff --git a/docs/legacy/index.md b/docs/legacy/index.md
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diff --git a/docs/legacy/installing.md b/docs/legacy/installing.md
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# Installation
TPOT is built on top of several existing Python libraries, including:
diff --git a/docs/legacy/related.md b/docs/legacy/related.md
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Other Automated Machine Learning (AutoML) tools and related projects:
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# Release Notes
## Version 0.12.0
diff --git a/docs/legacy/support.md b/docs/legacy/support.md
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TPOT was developed in the [Computational Genetics Lab](http://epistasis.org/) at the [University of Pennsylvania](https://www.upenn.edu/) with funding from the [NIH](http://www.nih.gov/) under grant R01 AI117694. We are incredibly grateful for the support of the NIH and the University of Pennsylvania during the development of this project.
The TPOT logo was designed by Todd Newmuis, who generously donated his time to the project.
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# Using TPOT
## What to expect from AutoML software
diff --git a/docs/overrides/main.html b/docs/overrides/main.html
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-{% extends "base.html" %}
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-{% block outdated %}
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- Click here to go to latest.
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-{% endblock %}
\ No newline at end of file
diff --git a/docs/scripts/build_mkdocs.sh b/docs/scripts/build_mkdocs.sh
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@@ -40,14 +40,12 @@ theme:
palette:
# light mode
- scheme: default
- primary: teal
toggle:
icon: material/brightness-7
name: Switch to dark mode
# dark mode
- scheme: slate
- primary: teal
toggle:
icon: material/brightness-4
name: Switch to light mode
diff --git a/mkdocs_legacy.yml b/mkdocs_legacy.yml
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@@ -11,19 +11,20 @@ site_dir: target/legacy_site
theme:
name: material
logo: assets/tpot-logo.jpg
- custom_dir: docs/overrides
features:
- toc.integrate
- navigation.top
palette:
# light mode
- scheme: default
+ primary: grey
toggle:
icon: material/brightness-7
name: Switch to dark mode
# dark mode
- scheme: slate
+ primary: grey
toggle:
icon: material/brightness-4
name: Switch to light mode
@@ -44,6 +45,9 @@ markdown_extensions:
- pymdownx.snippets
- pymdownx.superfences
+plugins:
+ - include-markdown
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copyright: Developed by Randal S. Olson and others at the University of Pennsylvania
nav: