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Fix coding variant annotations in gene page not shown when gene annotatin uses alias #508

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sync-by-unito bot opened this issue Jun 27, 2024 · 0 comments

sync-by-unito bot commented Jun 27, 2024

in pheweb gene page, can say no coding variants for a gene that actually has coding variants (just with different gene name).
E.g. CBLIF https://results.finngen.fi/gene/CBLIF
Unofficial alias GIF, which is found in coding variants https://results.finngen.fi/coding/GIF

In pheweb search for GIF it recognizes this as an alias and forwards to CBLIF/
Annotation file still say GIF for the gene.

Could use the gene alias table when checking for annotations and accept gene name for all aliases here so wont be

pheweb/pheweb/serve/data_access/db.py

Line 1616 in 01d5530

and split[self.header_i[self.gene_column]].upper() == gene.upper()

┆Issue is synchronized with this Wrike task by Unito

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