test_fine_geokit.yml

name: Run combined tests for fine, geokit, glaes and reskit
on: 
  workflow_dispatch:
    inputs:
      tags:
        description: 'Manual run' 
  push:
    branches: 
      - main
  pull_request:
    branches: 
      - main
  # Allows to trigger the workflow manually
    
  schedule:
    # * is a special character in YAML so you have to quote this string
    # Some Examples for cron syntax https://crontab.guru/examples.html
    # Schedules job at any point after 12 pm
    - cron:  '0 0 * * *'
    # Weekly after sunday
    # - cron: 0 0 * * 0
  
jobs:
    TestFineAndGeokitInstallation:
        name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }})
        runs-on: ${{ matrix.os }}
        strategy:
            fail-fast: false
            matrix:
                # os: ["ubuntu-latest","ubuntu-20.04", "macos-latest","macos-13","macos-12", "macos-11","windows-latest","windows-2019"]
                os: ["ubuntu-latest"]
        steps:
            - uses: conda-incubator/setup-miniconda@v3
              with:
                miniforge-version: latest
                channels: conda-forge
                activate-environment: test_env
            - name: Install libraries
              shell: pwsh
              id: install-step
              run: |
                    ls
                    echo "LS Done"
                    mamba install -v -n  test_env fine geokit pytest=6.2.4 scikit-learn=1.1.3
                    echo "Installation done"
                    conda list -n test_env
                    echo "libaries printed"                          
            - name: Get fine version
              shell: pwsh
              id: fine-version
              run: |
                  $FINE_STRING = conda list -e -n test_env fine | Out-String
                  echo the fine string is $FINE_STRING
                  $FINE_VERSION = [regex]::Match($FINE_STRING, 'fine=(\d+\.\d+\.\d+)=').Groups[1].Value 
                  echo "FINE_VERSION=$FINE_VERSION" >> $GITHUB_OUTPUT
                  echo $FINE_VERSION
            - name: Get other version
              shell: pwsh
              id: other-version
              run: |
                  $GEOKIT_STRING = conda list -e -n test_env geokit | Out-String
                  echo The geokit string is $GEOKIT_STRING
                  $GEOKIT_VERSION = [regex]::Match($GEOKIT_STRING, 'geokit=(\d+\.\d+\.\d+)=').Groups[1].Value 
                  echo "GEOKIT_VERSION=$GEOKIT_VERSION" >> $GITHUB_OUTPUT
                  echo $GEOKIT_VERSION
            - name: Checkout Fine
              uses: actions/checkout@v4
              with:
                repository: FZJ-IEK3-VSA/FINE
                path: './fine' 
                ref: v${{ steps.fine-version.outputs.FINE_VERSION }}
                fetch-depth: 0 
            - name: Checkout geokit
              uses: actions/checkout@v4
              with:
                repository: FZJ-IEK3-VSA/geokit
                path: './geokit'
                ref: ${{ steps.other-version.outputs.GEOKIT_VERSION }}
                fetch-depth: 0 
  
            
            - name: Run pytest for fine
              shell: pwsh
              run: |
                    echo "Start ls"
                    ls
                    echo "ls terminated"
                    cd fine
                    echo "start pytest"
                    conda run -n test_env python -m pytest test/
                    echo "Pytest done"
            - name: Run pytest for geokit
              shell: pwsh
              run: |
                    echo "Start ls"
                    ls
                    echo "ls terminated"
                    cd geokit
                    echo "start pytest"
                    conda run -n test_env python -m pytest
                    echo "Pytest done"