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autoavaliacao.Rmd
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autoavaliacao.Rmd
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---
title: Autoavaliação
output:
html_document:
toc: true
toc_float: true
css:
- ./CSS/generic.css
- ./CSS/logo-above-toc.css
- ./CSS/main-color.css
- ./CSS/narrow-margins.css
- ./CSS/responsive.css
pdf_document:
toc: true
toc_depth: 4
number_sections: false
includes:
in_header: tex/preamble.tex
before_body: [tex/cover-1.tex, tex/cover-2.tex]
latex_engine: xelatex
keep_tex: false
documentclass: book
classoption: oneside
papersize: a4
geometry: "top=2cm,left=2cm,right=2cm,bottom=2cm"
link-citations: true
always_allow_html: true
tables: true
---
<!--set up-->
```{r setup, include = FALSE, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', out.width = "100%", results = "hide"}
knitr::opts_chunk$set(
echo = FALSE,
warning = FALSE,
message = FALSE,
fig.align = 'center',
results = 'asis',
include = TRUE,
out.width = "100%",
knitr.kable.NA = '',
knitr.table.format = ifelse(knitr::is_html_output(), "html", "latex"),
webshot = "webshot",
dev = "png"
)
```
<!--load caches-->
```{r load-caches, echo = FALSE, include = FALSE}
folders <- list.dirs(file.path("cache/"), full.names = FALSE, recursive = FALSE)
for(folder in folders){
knitr::load_cache(label = folder, path = paste0(file.path("cache", folder), "/"))
}
```
<!--script for inserting LOGO ABOVE THE TOC-->
```{js}
$(document).ready(function() {
$('#TOC').parent().prepend('<div id=\"nav_logo\"><img src="PPG/Images/logo-programa.png"></div>');
});
```
<!--script for sharing-->
<p align="right">
```{r share, eval = knitr::is_html_output()}
home <- metadata$repository_url
source("Scripts/social-media-sharing.R", local = knitr::knit_global())
```
</p>
<br>
```{r quadrienal-vigente, results = "hide", echo = FALSE, include = FALSE, eval = has.sucupira.files}
# get years
source("Scripts/years-sucupira.R", local = knitr::knit_global())
# periodo
quadrienal.vigente <-
2021:min(
as.numeric(format(Sys.Date(), "%Y")),
max(anos),
2024)
# docentes
sheet <- "Docentes"
source("Scripts/read-xlsx-sucupira.R", local = knitr::knit_global())
# get years
source("Scripts/years-sucupira.R", local = knitr::knit_global())
names(sucupira.list) <- as.character(anos)
# get data for the current period
sucupira <- sucupira.list[as.character(quadrienal.vigente)] %>%
plyr::compact()
docentes.quadrienio <- data.frame(do.call(dplyr::bind_rows, sucupira))
names(docentes.quadrienio) <-
names(sucupira[[as.character(max(as.numeric(quadrienal.vigente)))]])
# filter docente permanente
docentes.quadrienio <-
docentes.quadrienio[docentes.quadrienio$Categoria == "PERMANENTE",]
docentes.quadrienio <-
docentes.quadrienio %>% dplyr::select(
"Nome Docente"
)
# remove duplicates
docentes.quadrienio <- docentes.quadrienio[!duplicated(docentes.quadrienio),]
# to title case
docentes.quadrienio <- sort(tools::toTitleCase(tolower(docentes.quadrienio)))
```
```{r cover-one, echo = FALSE, include = FALSE, eval = knitr::is_html_output()}
source("Scripts/cover-1.R", local = knitr::knit_global())
source("Scripts/cover-2.R", local = knitr::knit_global())
```
```{=latex}
% unnumbered chapters and arabic page numbering
\backmatter
\clearpage
\markboth{}{}
\EnableFootNotes
```
```{r, eval = knitr::is_html_output()}
cat("## **Avaliação CAPES** {#avalicao-capes .tabset}")
```
```{r, eval = !knitr::is_html_output()}
cat("## **Avaliação CAPES**")
cat('\n\n')
```
<!--script for generating HORIZONTAL LINE-->
<hr style="height:2px;border-width:0;color:black;background-color:black">
```{r, eval = !has.avaliacao}
cat('<br>')
```
```{r avaliacao, eval = has.avaliacao, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# initialize all sheets
abas <- readxl::excel_sheets("PPG/Avaliação.xlsx")
# display each sheet in a tab
for (j in 1:length(abas)) {
cat('\n\n<!-- -->\n\n')
cat(paste0('### **', abas[j], '**'))
cat('\n\n<!-- -->\n\n')
avaliacao.raw <-
readxl::read_excel("PPG/Avaliação.xlsx",
sheet = abas[j],
col_types = c("text"))
# replace the link by a tag
Abrir <- matrix(NA, nrow = dim(avaliacao.raw)[1])
colnames(Abrir) <- "Abrir"
# add hyperlinks
for (i in 1:dim(avaliacao.raw)[1]) {
if (knitr::is_html_output()) {
if (!is.na(avaliacao.raw[i, ncol(avaliacao.raw)])) {
Abrir[i] <-
paste0('<a href="',avaliacao.raw[i, ncol(avaliacao.raw)],'" target="_blank"', '>', fontawesome::fa("up-right-from-square"), '</a>')
}
} else {
if (!is.na(avaliacao.raw[i, ncol(avaliacao.raw)])) {
Abrir[i] <-
paste0('\\url{', avaliacao.raw[i, ncol(avaliacao.raw)],'}')
}
}
}
avaliacao <- cbind(avaliacao.raw[, -ncol(avaliacao.raw)], Abrir)
table <- avaliacao
cat(knitr::knit_print(
knitr::kable(
x = table,
align = "l",
escape = FALSE,
format = ifelse(knitr::is_html_output(), "html", "latex"),
booktabs = TRUE,
linesep = "",
caption = ifelse(knitr::is_html_output(), "", abas[j])
) %>% kableExtra::kable_styling(
bootstrap_options = c("striped", "hover", "condensed", "responsive"),
latex_options = c("striped", "repeat_header", "HOLD_position"),
latex_table_env = "tabularx",
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:ncol(table), width = paste0(c(0.10,0.45,0.45)*(21-3-3), "cm")) %>%
kableExtra::column_spec(column = 1, bold = TRUE) %>%
kableExtra::row_spec(row = 0, bold = TRUE)
))
if (knitr::is_html_output()) {
# print end of tab rows
cat('<br><a style="float:right" href="#top"><b>Início </b>', fontawesome::fa("circle-arrow-up"), '</a><br>'
)
}
if (knitr::is_latex_output()) {
cat("\\newpage")
}
}
```
<br>
```{r, eval = all(knitr::is_html_output(), has.sucupira.files)}
cat("## **Dados do Coleta", paste0(quadrienal.vigente[1], "-", quadrienal.vigente[length(quadrienal.vigente)], "** {#coleta .tabset}"))
```
```{r, eval = all(!knitr::is_html_output(), has.sucupira.files)}
cat("## **Dados do Coleta", paste0(quadrienal.vigente[1], "-", quadrienal.vigente[length(quadrienal.vigente)], "** {#coleta .tabset}"))
cat('\n\n')
```
<!--script for generating HORIZONTAL LINE-->
<hr style="height:2px;border-width:0;color:black;background-color:black">
```{r descritivo, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# get years
source("Scripts/years-sucupira.R", local = knitr::knit_global())
# Get amount of data from Sucupira XLSX files
source("Scripts/get-sucupira-sheets-names.R", local = knitr::knit_global())
summ.df <- data.frame(
"Ano" = rep(NA, length(quadrienal.vigente) * length(sucupira.sheets)),
"Aba" = rep(NA, length(quadrienal.vigente) * length(sucupira.sheets)),
"Dimensão (L x C)" = rep(NA, length(quadrienal.vigente) * length(sucupira.sheets)),
check.names = FALSE
)
if (has.sucupira.files) {
for (ROW in 1:length(sucupira.sheets)) {
sheet <- sucupira.sheets[ROW]
source("Scripts/read-xlsx-sucupira.R", local = knitr::knit_global())
# Get yearly data from Sucupira XLSX files
names(sucupira.list) <- as.character(anos)
sucupira.quadr <- sucupira.list[as.character(quadrienal.vigente)]
for (COL in 1:length(quadrienal.vigente)) {
ano <- quadrienal.vigente[COL]
summ.df$Ano[COL + length(quadrienal.vigente)*(ROW - 1)] <- ano
summ.df$Aba[COL + length(quadrienal.vigente)*(ROW - 1)] <- sheet
summ.df$`Dimensão (L x C)`[COL + length(quadrienal.vigente)*(ROW - 1)] <-
paste0(
nrow(!is.na(sucupira.list[[as.character(ano)]])),
" x ",
ncol(!is.na(sucupira.list[[as.character(ano)]]))
)
}
}
}
# transpose years as columns
summ.df <- tidyr::pivot_wider(
data = summ.df,
names_from = Ano,
values_from = `Dimensão (L x C)`
)
# print tables
if (knitr::is_html_output()) {
# use kable for HTML output
knitr::kable(
summ.df,
align = "l",
escape = FALSE,
format = "html",
booktabs = TRUE,
linesep = "",
caption = "Dados do Coleta por aba (linhas x colunas)"
) %>% kableExtra::kable_styling(
bootstrap_options = c("striped", "hover", "condensed", "responsive"),
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:(1 + length(quadrienal.vigente)), width = paste0(c(0.60, rep(0.40/(length(quadrienal.vigente)), times = length(quadrienal.vigente)))*(21-3-3), "cm")) %>%
kableExtra::column_spec(column = 1, bold = TRUE) %>%
kableExtra::row_spec(row = 0, bold = TRUE)
} else {
# use tinytable for LaTeX output
summ.df <- data.frame(summ.df, check.names = FALSE)
options(tinytable_print_output = "latex")
tinytable::tt(
summ.df,
width = c(0.60, rep(0.40/(length(quadrienal.vigente)), times = length(quadrienal.vigente)))*(21-3-3),
style = "bootstrap",
align = "l",
caption = ifelse(knitr::is_html_output(), "", "Dados do Coleta por aba (linhas x colunas)")
) %>%
tinytable::theme_tt("multipage", rowhead = 1, latex_float = "H") %>%
tinytable::style_tt(i = 0, j = 1:ncol(summ.df), bold = TRUE) %>%
tinytable::style_tt(i = 1:nrow(summ.df), j = 1, bold = TRUE)
}
source("Scripts/fonte-sucupira.R", local = knitr::knit_global())
# Add LaTeX commands for new page and float barrier
if(knitr::is_latex_output()) {
cat('\\newpage')
}
```
<br>
```{=latex}
\newpage
```
```{r, eval = knitr::is_html_output()}
cat("## **Ficha de Avaliação** {#ficha-avaliacao}")
```
<!--script for generating HORIZONTAL LINE-->
<hr style="height:2px;border-width:0;color:black;background-color:black">
## **1. Programa** {#programa .tabset}
<!--script for generating HORIZONTAL LINE-->
<hr style="height:2px;border-width:0;color:black;background-color:black">
```{r 1-1-1, eval = knitr::is_html_output()}
cat("### **1.1.1**")
cat('\n\n')
cat("#### **Estrutura Acadêmica do Programa** {.tabset}")
cat('\n\n')
```
```{r, eval = !knitr::is_html_output()}
cat("### **1.1.1 Estrutura Acadêmica do Programa**")
cat('\n\n')
```
```{r cursos-objetivos, eval = has.dados.cadastrais, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
if(knitr::is_html_output()) {
cat("##### **Objetivos do curso**")
cat('\n\n')
}
cursos.raw <-
readxl::read_excel("PPG/Dados Cadastrais.xlsx",
sheet = "Cursos",
col_types = c("text"))
cursos <- dplyr::select(cursos.raw, c("Nível", "Objetivos"))
# print tables
if (knitr::is_html_output()) {
# use kable for HTML output
knitr::kable(
cursos,
align = "l",
escape = FALSE,
format = "html",
booktabs = TRUE,
linesep = "",
caption = "Objetivos do Curso"
) %>% kableExtra::kable_styling(
bootstrap_options = c("striped", "hover", "condensed", "responsive"),
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:ncol(cursos), width = paste0(c(0.10,0.90)*(21-3-3), "cm")) %>%
kableExtra::column_spec(column = 1, bold = TRUE) %>%
kableExtra::row_spec(row = 0, bold = TRUE)
} else {
# use tinytable for LaTeX output
cursos <- data.frame(cursos, check.names = FALSE)
options(tinytable_print_output = "latex")
tinytable::tt(
cursos,
width = c(0.10,0.90)*(21-3-3),
style = "bootstrap",
align = "l",
caption = ifelse(knitr::is_html_output(), "", "Objetivos do Curso")
) %>%
tinytable::theme_tt("multipage", rowhead = 1, latex_float = "H") %>%
tinytable::style_tt(i = 0, j = 1:ncol(cursos), bold = TRUE) %>%
tinytable::style_tt(i = 1:nrow(cursos), j = 1, bold = TRUE)
}
source("Scripts/fonte-sucupira.R", local = knitr::knit_global())
# Add LaTeX commands for new page and float barrier
if(knitr::is_latex_output()) {
cat('\\newpage')
}
```
```{r 1-1-1-data, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# projetos - membros
sheet <- "Projetos - Membros"
source("Scripts/read-xlsx-sucupira.R", local = knitr::knit_global())
# get years
source("Scripts/years-sucupira.R", local = knitr::knit_global())
names(sucupira.list) <- as.character(anos)
# get data for the current period
sucupira <- sucupira.list[as.character(quadrienal.vigente)] %>%
plyr::compact()
for (i in 1:length(sucupira)) {
sucupira[[i]] <- cbind("Anos" = rep(quadrienal.vigente[i], times = dim(sucupira[[i]])[1]), sucupira[[i]])
}
sucupira.df <- data.frame(do.call(dplyr::bind_rows, sucupira))
names(sucupira.df) <- names(sucupira[[as.character(max(as.numeric(quadrienal.vigente)))]])
# filter docente responsável
sucupira.df <- sucupira.df[sucupira.df$`Membro Responsável` == "Sim",]
# filter docentes only
sucupira.df <- sucupira.df[sucupira.df$`Categoria do Membro do Projeto` == "Docente",]
# keep docente permanente only
sucupira.df <-
sucupira.df[sucupira.df$`Nome do Membro do Projeto` %in% toupper(docentes.quadrienio), ]
sucupira.df <-
sucupira.df %>% dplyr::select(
"Identificador do Projeto de Pesquisa",
"Anos",
"Área de Concentração",
"Linha de Pesquisa",
"Nome do Projeto de Pesquisa",
"Natureza do Projeto de Pesquisa",
"Nome do Membro do Projeto",
"Categoria do Membro do Projeto",
"Data de Início",
"Data da Situação",
"Situação"
)
sucupira.df$`Área de Concentração` <- tools::toTitleCase(tolower(sucupira.df$`Área de Concentração`))
sucupira.df$`Linha de Pesquisa` <- tools::toTitleCase(tolower(sucupira.df$`Linha de Pesquisa`))
sucupira.df$`Nome do Projeto de Pesquisa` <- tools::toTitleCase(tolower(sucupira.df$`Nome do Projeto de Pesquisa`))
sucupira.df$`Natureza do Projeto de Pesquisa` <- tools::toTitleCase(tolower(sucupira.df$`Natureza do Projeto de Pesquisa`))
sucupira.df$`Nome do Membro do Projeto` <- tools::toTitleCase(tolower(sucupira.df$`Nome do Membro do Projeto`))
sucupira.df$`Categoria do Membro do Projeto` <- tools::toTitleCase(tolower(sucupira.df$`Categoria do Membro do Projeto`))
sucupira.df$`Situação` <- tools::toTitleCase(tolower(sucupira.df$`Situação`))
# remove duplicates
sucupira.df <- sucupira.df[!duplicated(sucupira.df),]
# if still duplicated, keep Situacão = Concluído
sucupira.df <- sucupira.df[!duplicated(sucupira.df[, 1:7], fromLast = TRUE),]
# if NA, replace values
sucupira.df$`Área de Concentração`[is.na(sucupira.df$`Área de Concentração`)] <- "Indefinida"
sucupira.df$`Linha de Pesquisa`[is.na(sucupira.df$`Linha de Pesquisa`)] <- "Indefinida"
sucupira.df$`Natureza do Projeto de Pesquisa`[is.na(sucupira.df$`Natureza do Projeto de Pesquisa`)] <- "Indefinida"
# get financiadores from another Sucupira worksheet
sheet <- "Projetos - Financiadores"
source("Scripts/read-xlsx-sucupira.R", local = knitr::knit_global())
# get years
source("Scripts/years-sucupira.R", local = knitr::knit_global())
names(sucupira.list) <- as.character(anos)
# get data for the current period
sucupira <- sucupira.list[as.character(quadrienal.vigente)] %>%
plyr::compact()
# select variables related to financiadores
sucupira <- sucupira %>%
lapply(function(x) {
x <- x %>%
dplyr::select(
"Identificador do Projeto de Pesquisa",
"Nome do Financiador",
"Natureza do Financiador",
"Financiador Estrangeiro",
"Data Início Financiador",
"Data Fim Financiador"
)
})
# remove duplicates
sucupira <- lapply(sucupira, function(x) x[!duplicated(x),])
# if still duplicated, keep Situacão = Concluído
# match financiadores with projects
sucupira.financiadores <- list()
for (i in 1:length(sucupira)) {
sucupira.financiadores[[i]] <- dplyr::left_join(sucupira.df, sucupira[[i]], by = "Identificador do Projeto de Pesquisa", keep = FALSE)
# remove rows with NA values inyroduced after left_join
sucupira.financiadores[[i]] <- sucupira.financiadores[[i]][!is.na(sucupira.financiadores[[i]][, which(names(sucupira.financiadores[[i]]) == "Data Início Financiador")]), ]
}
# to dataframe
sucupira.financiadores.df <- data.frame(do.call(dplyr::bind_rows, sucupira.financiadores), check.names = FALSE)
# remove duplicates
sucupira.financiadores.df <- sucupira.financiadores.df[!duplicated(sucupira.financiadores.df),]
sucupira.financiadores.df$`Data Fim Financiador`[is.na(sucupira.financiadores.df$`Data Fim Financiador`)] <- "Atual"
```
```{r 1-1-1-ac, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# áreas de concentração
table.ac <-
data.frame(matrix(
NA,
nrow = length(unique(sucupira.df$`Área de Concentração`)),
ncol = length(quadrienal.vigente)
))
rownames(table.ac) <- NULL
table.ac <-
cbind(unique(sucupira.df$`Área de Concentração`), table.ac)
colnames(table.ac) <-
c("Área de Concentração", as.character(quadrienal.vigente))
for (i in 1:dim(table.ac)[1]) {
for (j in 1:length(quadrienal.vigente)) {
data <- sucupira.df[sucupira.df$Anos == quadrienal.vigente[j],]
table.ac[i, j + 1] <-
try(data$`Área de Concentração`[match(table.ac$`Área de Concentração`[i],
data$`Área de Concentração`)], silent = TRUE)
}
}
table.ac.long <-
tidyr::gather(table.ac[, -1],
"Ano",
"Área de Concentração",
colnames(table.ac)[-1],
factor_key = TRUE)
# to title case
table.ac.long$`Área de Concentração` <- tools::toTitleCase(tolower(table.ac.long$`Área de Concentração`))
table.ac.long <- rbind(
table.ac.long,
data.frame(
"Ano" = rep(paste0(
min(quadrienal.vigente), "-", max(quadrienal.vigente)
), times = dim(table.ac)[1]),
"Área de Concentração" = rep("Áreas", times = dim(table.ac)[1]),
check.names = FALSE
)
)
# docentes por área de concentração
table.ac.doc <- table(
sucupira.df$Anos[sucupira.df$`Categoria do Membro do Projeto` == "Docente"],
sucupira.df$`Área de Concentração`[sucupira.df$`Categoria do Membro do Projeto` == "Docente"],
sucupira.df$`Nome do Membro do Projeto`[sucupira.df$`Categoria do Membro do Projeto` == "Docente"]
) %>% as.data.frame()
# drop Freq = 0
table.ac.doc <- table.ac.doc[table.ac.doc$Freq > 0, ]
# select AC e Docentes
table.ac.doc <- dplyr::select(as.data.frame(table.ac.doc), "Var1", "Var2", "Var3")
names(table.ac.doc) <- c("Ano", "Área de Concentração", "Docente")
# count docentes per year per AC
table.ac.doc.freq <- table.ac.doc %>%
dplyr::group_by(Ano, `Área de Concentração`) %>%
dplyr::summarise(Docente = n())
# long format
table.ac.doc.long <- data.frame()
for(i in 1:dim(table.ac.doc.freq)[1]){
table.ac.doc.long <- rbind(table.ac.doc.long,
data.frame("Ano" = rep(table.ac.doc.freq$Ano[i], times = table.ac.doc.freq$Docente[i]),
"Área de Concentração" = rep(table.ac.doc.freq$`Área de Concentração`[i], times = table.ac.doc.freq$Docente[i]),
"Docente" = rep(table.ac.doc.freq$Docente[i], times = table.ac.doc.freq$Docente[i]),
check.names = FALSE))
}
# rename and drop columns
table.ac.doc.long <- dplyr::select(table.ac.doc.long, "Ano", "Área de Concentração")
names(table.ac.doc.long) <- c("Ano", "Docente Permanente")
table.ac.doc.long <- rbind(
table.ac.doc.long,
data.frame(
"Ano" = rep(paste0(
min(quadrienal.vigente), "-", max(quadrienal.vigente)
), times = length(unique(table.ac.doc$Docente))),
"Docente Permanente" = rep("Áreas", times = length(unique(table.ac.doc$Docente))),
check.names = FALSE
)
)
my_N <- function(data, ...) {
gtsummary::style_number(sum(data == "Áreas", na.rm = TRUE), digits = 0)
}
# change all column types to factors
table.ac.long <- table.ac.long %>%
dplyr::mutate(dplyr::across(gtsummary::everything(), as.factor))
# print tables
table.ac.gt <-
gtsummary::tbl_summary(
table.ac.long,
by = "Ano",
statistic = list(gtsummary::all_categorical() ~ "{n}"),
missing = "no",
digits = gtsummary::everything() ~ 0,
sort = gtsummary::all_categorical() ~ "frequency"
) %>%
gtsummary::modify_header(label = "**Ano**", gtsummary::all_stat_cols() ~ "**{level}**") %>%
gtsummary::modify_footnote(gtsummary::all_stat_cols() ~ NA) %>%
gtsummary::bold_labels() %>%
gtsummary::add_stat(fns = gtsummary::all_categorical() ~ my_N) %>%
gtsummary::modify_header(list(
add_stat_1 ~ "**Quadriênio**",
gtsummary::all_stat_cols() ~ "**{level}**"
)) %>%
gtsummary::remove_row_type(
variables = c('Área de Concentração'),
type = "level",
level_value = ("Áreas")
) %>%
gtsummary::modify_column_hide(columns = paste0("stat_", as.character(length(quadrienal.vigente) + 1)))
# print tables
table.ac.doc.gt <-
gtsummary::tbl_summary(
table.ac.doc.long,
by = "Ano",
statistic = list(gtsummary::all_categorical() ~ "{n}"),
missing = "no",
digits = gtsummary::everything() ~ 0,
sort = gtsummary::all_categorical() ~ "frequency"
) %>%
gtsummary::modify_header(label = "**Ano**", gtsummary::all_stat_cols() ~ "**{level}**") %>%
gtsummary::modify_footnote(gtsummary::all_stat_cols() ~ NA) %>%
gtsummary::bold_labels() %>%
gtsummary::add_stat(fns = gtsummary::all_categorical() ~ my_N) %>%
gtsummary::modify_header(list(
add_stat_1 ~ "**Quadriênio**",
gtsummary::all_stat_cols() ~ "**{level}**"
)) %>%
gtsummary::remove_row_type(
variables = c('Docente Permanente'),
type = "level",
level_value = ("Áreas")
) %>%
gtsummary::modify_column_hide(columns = paste0("stat_", as.character(length(quadrienal.vigente) + 1)))
```
```{r 1-1-1-AC, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
if(knitr::is_html_output()) {
cat("##### **AC** {#descricao-ac}")
cat('\n\n')
}
# list all tables
table.all <-
list(table.ac.gt,
table.ac.doc.gt
)
# drop empty elements from list
table.all <- table.all[lapply(table.all, length) > 0]
table.all <- gtsummary::tbl_stack(table.all)
# Print HTML table
if (knitr::is_html_output()) {
print(table.all)
}
# Print LaTeX table
if (knitr::is_latex_output()) {
cat('\\FloatBarrier')
# Convert gtsummary object to kableExtra object
kable_table <- gtsummary::as_kable_extra(
x = table.all,
escape = FALSE,
format = ifelse(knitr::is_html_output(), "html", "latex"),
booktabs = TRUE,
linesep = "",
caption = ifelse(knitr::is_html_output(), "", "Áreas de Concentração")
) %>%
kableExtra::kable_styling(
bootstrap_options = c("basic", "hover", "condensed", "responsive"),
latex_options = c("basic", "repeat_header", "HOLD_position"),
latex_table_env = "tabularx",
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:(1 + length(quadrienal.vigente)+ 1), width = paste0(c(0.65, rep(0.20/(length(quadrienal.vigente)), times = length(quadrienal.vigente)), 0.15)*(21-3-3), "cm"))
print(kable_table)
}
source("Scripts/fonte-sucupira.R", local = knitr::knit_global())
# Add LaTeX commands for new page and float barrier
if(knitr::is_latex_output()) {
cat('\\newpage')
}
```
```{r 1-1-1-AC-detalhes, eval = has.dados.cadastrais, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# read data
area.raw <-
readxl::read_excel("PPG/Dados Cadastrais.xlsx",
sheet = "AC",
col_types = c("text"))
area.ativas <- area.raw
area.ativas$Fim[is.na(area.ativas$Fim)] <- "Atual"
# to title case
area.ativas$'Área de Concentração' <- tools::toTitleCase(tolower(area.ativas$'Área de Concentração'))
# print tables
ids <- order(area.ativas$'Área de Concentração', decreasing = FALSE)
area.ativas <- area.ativas[ids,]
# add ID
area.ativas <- cbind(
seq(1, dim(area.ativas)[1]),
area.ativas
)
colnames(area.ativas) <-
c("ID",colnames(area.ativas)[-1])
rownames(area.ativas) <- NULL
# print tables
if (knitr::is_html_output()) {
# use kable for HTML output
knitr::kable(
area.ativas,
align = "l",
escape = FALSE,
format = "html",
booktabs = TRUE,
linesep = "",
caption = "Áreas de Concentração"
) %>% kableExtra::kable_styling(
bootstrap_options = c("striped", "hover", "condensed", "responsive"),
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:ncol(area.ativas), width = paste0(c(0.05,0.30,0.45,0.10,0.10)*(21-3-3), "cm")) %>%
kableExtra::column_spec(column = 1, bold = TRUE) %>%
kableExtra::row_spec(row = 0, bold = TRUE)
} else {
# use tinytable for LaTeX output
area.ativas <- data.frame(area.ativas, check.names = FALSE)
options(tinytable_print_output = "latex")
tinytable::tt(
area.ativas,
width = c(0.05,0.30,0.45,0.10,0.10)*(21-3-3),
style = "bootstrap",
align = "l",
caption = ifelse(knitr::is_html_output(), "", "Áreas de Concentração")
) %>%
tinytable::theme_tt("multipage", rowhead = 1, latex_float = "H") %>%
tinytable::style_tt(i = 0, j = 1:ncol(area.ativas), bold = TRUE) %>%
tinytable::style_tt(i = 1:nrow(area.ativas), j = 1, bold = TRUE)
}
source("Scripts/fonte-sucupira.R", local = knitr::knit_global())
# Add LaTeX commands for new page and float barrier
if(knitr::is_latex_output()) {
cat('\\newpage')
}
```
```{r 1-1-1-lp, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
table.lp <-
data.frame(matrix(
NA,
nrow = length(unique(sucupira.df$`Linha de Pesquisa`)),
ncol = length(quadrienal.vigente)
))
rownames(table.lp) <- NULL
table.lp <- cbind(unique(sucupira.df$`Linha de Pesquisa`), table.lp)
colnames(table.lp) <-
c("Linha de Pesquisa", as.character(quadrienal.vigente))
for (i in 1:dim(table.lp)[1]) {
for (j in 1:length(quadrienal.vigente)) {
data <- sucupira.df[sucupira.df$Anos == quadrienal.vigente[j],]
table.lp[i, j + 1] <-
try(data$`Linha de Pesquisa`[match(table.lp$`Linha de Pesquisa`[i], data$`Linha de Pesquisa`)]
, silent = TRUE)
}
}
table.lp.long <-
tidyr::gather(table.lp[, -1],
"Ano",
"Linha de Pesquisa",
colnames(table.lp)[-1],
factor_key = TRUE)
# to title case
table.lp.long$`Linha de Pesquisa` <- tools::toTitleCase(tolower(table.lp.long$`Linha de Pesquisa`))
table.lp.long <- rbind(table.lp.long,
data.frame(
"Ano" = rep(paste0(
min(quadrienal.vigente), "-", max(quadrienal.vigente)
), times = dim(table.lp)[1]),
"Linha de Pesquisa" = rep("Linhas", times = dim(table.lp)[1]),
check.names = FALSE
))
# docentes por linha de pesquisa
table.lp.doc <- table(
sucupira.df$Anos[sucupira.df$`Categoria do Membro do Projeto` == "Docente"],
sucupira.df$`Linha de Pesquisa`[sucupira.df$`Categoria do Membro do Projeto` == "Docente"],
sucupira.df$`Nome do Membro do Projeto`[sucupira.df$`Categoria do Membro do Projeto` == "Docente"]
) %>% as.data.frame()
# drop Freq = 0
table.lp.doc <- table.lp.doc[table.lp.doc$Freq > 0, ]
# select AC e Docentes
table.lp.doc <- dplyr::select(as.data.frame(table.lp.doc), "Var1", "Var2", "Var3")
names(table.lp.doc) <- c("Ano", "Linha de Pesquisa", "Docente")
# count docentes per year per AC
table.lp.doc.freq <- table.lp.doc %>%
dplyr::group_by(Ano, `Linha de Pesquisa`) %>%
dplyr::summarise(Docente = n())
# long format
table.lp.doc.long <- data.frame()
for(i in 1:dim(table.lp.doc.freq)[1]){
table.lp.doc.long <- rbind(table.lp.doc.long,
data.frame("Ano" = rep(table.lp.doc.freq$Ano[i], times = table.lp.doc.freq$Docente[i]),
"Linha de Pesquisa" = rep(table.lp.doc.freq$`Linha de Pesquisa`[i], times = table.lp.doc.freq$Docente[i]),
"Docente" = rep(table.lp.doc.freq$Docente[i], times = table.lp.doc.freq$Docente[i]),
check.names = FALSE))
}
# rename and drop columns
table.lp.doc.long <- dplyr::select(table.lp.doc.long, "Ano", "Linha de Pesquisa")
names(table.lp.doc.long) <- c("Ano", "Docente Permanente")
table.lp.doc.long <- rbind(
table.lp.doc.long,
data.frame(
"Ano" = rep(paste0(
min(quadrienal.vigente), "-", max(quadrienal.vigente)
), times = length(unique(table.lp.doc$Docente))),
"Docente Permanente" = rep("Linhas", times = length(unique(table.lp.doc$Docente))),
check.names = FALSE
)
)
my_N <- function(data, ...) {
gtsummary::style_number(sum(data == "Linhas", na.rm = TRUE), digits = 0)
}
# change all column types to factors
table.lp.long <- table.lp.long %>%
dplyr::mutate(dplyr::across(gtsummary::everything(), as.factor))
# print tables
table.lp.gt <-
gtsummary::tbl_summary(
table.lp.long,
by = "Ano",
statistic = list(gtsummary::all_categorical() ~ "{n}"),
missing = "no",
digits = gtsummary::everything() ~ 0
) %>%
gtsummary::modify_header(label = "**Ano**", gtsummary::all_stat_cols() ~ "**{level}**") %>%
gtsummary::modify_footnote(gtsummary::all_stat_cols() ~ NA) %>%
gtsummary::bold_labels() %>%
gtsummary::add_stat(fns = gtsummary::all_categorical() ~ my_N) %>%
gtsummary::modify_header(list(
add_stat_1 ~ "**Quadriênio**",
gtsummary::all_stat_cols() ~ "**{level}**"
)) %>%
gtsummary::remove_row_type(
variables = c('Linha de Pesquisa'),
type = "level",
level_value = ("Linhas")
) %>%
gtsummary::modify_column_hide(columns = paste0("stat_", as.character(length(quadrienal.vigente) + 1)))
# print tables
table.lp.doc.gt <-
gtsummary::tbl_summary(
table.lp.doc.long,
by = "Ano",
statistic = list(gtsummary::all_categorical() ~ "{n}"),
missing = "no",
digits = gtsummary::everything() ~ 0
) %>%
gtsummary::modify_header(label = "**Ano**", gtsummary::all_stat_cols() ~ "**{level}**") %>%
gtsummary::modify_footnote(gtsummary::all_stat_cols() ~ NA) %>%
gtsummary::bold_labels() %>%
gtsummary::add_stat(fns = gtsummary::all_categorical() ~ my_N) %>%
gtsummary::modify_header(list(
add_stat_1 ~ "**Quadriênio**",
gtsummary::all_stat_cols() ~ "**{level}**"
)) %>%
gtsummary::remove_row_type(
variables = c('Docente Permanente'),
type = "level",
level_value = ("Linhas")
) %>%
gtsummary::modify_column_hide(columns = paste0("stat_", as.character(length(quadrienal.vigente) + 1)))
```
```{r 1-1-1-LP, eval = has.sucupira.files, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
if(knitr::is_html_output()) {
cat("##### **LP** {#descricao-lp}")
cat('\n\n')
}
# list all tables
table.all <-
list(table.lp.gt,
table.lp.doc.gt
)
# drop empty elements from list
table.all <- table.all[lapply(table.all, length) > 0]
table.all <- gtsummary::tbl_stack(table.all)
# Print HTML table
if (knitr::is_html_output()) {
print(table.all)
}
# Print LaTeX table
if (knitr::is_latex_output()) {
cat('\\FloatBarrier')
# Convert gtsummary object to kableExtra object
kable_table <- gtsummary::as_kable_extra(
x = table.all,
escape = FALSE,
format = ifelse(knitr::is_html_output(), "html", "latex"),
booktabs = TRUE,
linesep = "",
caption = ifelse(knitr::is_html_output(), "", "Linhas de Pesquisa")
) %>%
kableExtra::kable_styling(
bootstrap_options = c("basic", "hover", "condensed", "responsive"),
latex_options = c("basic", "repeat_header", "HOLD_position"),
latex_table_env = "tabularx",
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:(1 + length(quadrienal.vigente)+ 1), width = paste0(c(0.65, rep(0.20/(length(quadrienal.vigente)), times = length(quadrienal.vigente)), 0.15)*(21-3-3), "cm"))
print(kable_table)
}
source("Scripts/fonte-sucupira.R", local = knitr::knit_global())
# Add LaTeX commands for new page and float barrier
if(knitr::is_latex_output()) {
cat('\\newpage')
}
```
```{r 1-1-1-LP-detalhes, eval = has.dados.cadastrais, echo = FALSE, warning = FALSE, message = FALSE, fig.align = 'center', results = 'asis', fig.pos='H'}
# read data
linhas.raw <-
readxl::read_excel("PPG/Dados Cadastrais.xlsx",
sheet = "LP",
col_types = c("text"))
linhas.atual <- linhas.raw[is.na(linhas.raw$Fim), ]
linhas.atual$Fim[is.na(linhas.atual$Fim)] <- "Atual"
# to title case
linhas.atual$'Linhas de Pesquisa' <- tools::toTitleCase(tolower(linhas.atual$'Linhas de Pesquisa'))
# print tables
ids <- order(linhas.atual$'Linhas de Pesquisa', decreasing = FALSE)
linhas.atual <- linhas.atual[ids,]
# add ID
linhas.atual <- cbind(
seq(1, dim(linhas.atual)[1]),
linhas.atual
)
colnames(linhas.atual) <-
c("ID",colnames(linhas.atual)[-1])
rownames(linhas.atual) <- NULL
# print tables
if (knitr::is_html_output()) {
# use kable for HTML output
knitr::kable(
linhas.atual,
align = "l",
escape = FALSE,
format = "html",
booktabs = TRUE,
linesep = "",
caption = "Linhas de Pesquisa"
) %>% kableExtra::kable_styling(
bootstrap_options = c("striped", "hover", "condensed", "responsive"),
full_width = TRUE,
position = "center"
) %>% kableExtra::column_spec(column = 1:ncol(linhas.atual), width = paste0(c(0.05,0.30,0.45,0.10,0.10)*(21-3-3), "cm")) %>%
kableExtra::column_spec(column = 1, bold = TRUE) %>%
kableExtra::row_spec(row = 0, bold = TRUE)
} else {