diff --git a/poetry.lock b/poetry.lock index 46b2ba6..fbc4aaf 100644 --- a/poetry.lock +++ b/poetry.lock @@ -89,7 +89,7 @@ test = ["astroid", "pytest"] [[package]] name = "atomicwrites" -version = "1.4.0" +version = "1.4.1" description = "Atomic file writes." category = "dev" optional = false @@ -97,17 +97,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "21.4.0" +version = "22.1.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope-interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope-interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope-interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope-interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope-interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "babel" @@ -269,7 +269,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.4.1" +version = "6.4.2" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -323,7 +323,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "distlib" -version = "0.3.4" +version = "0.3.5" description = "Distribution utilities" category = "main" optional = false @@ -371,7 +371,7 @@ python-versions = ">=3.6" [[package]] name = "executing" -version = "0.8.3" +version = "0.9.1" description = "Get the currently executing AST node of a frame, and other information" category = "dev" optional = false @@ -379,7 +379,7 @@ python-versions = "*" [[package]] name = "fastjsonschema" -version = "2.15.3" +version = "2.16.1" description = "Fastest Python implementation of JSON schema" category = "dev" optional = false @@ -402,16 +402,16 @@ testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-co [[package]] name = "flake8" -version = "4.0.1" +version = "5.0.0" description = "the modular source code checker: pep8 pyflakes and co" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.6.1" [package.dependencies] -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.8.0,<2.9.0" -pyflakes = ">=2.4.0,<2.5.0" +mccabe = ">=0.7.0,<0.8.0" +pycodestyle = ">=2.9.0,<2.10.0" +pyflakes = ">=2.5.0,<2.6.0" [[package]] name = "flake8-bandit" @@ -467,7 +467,7 @@ flake8 = "*" [[package]] name = "flake8-rst-docstrings" -version = "0.2.6" +version = "0.2.7" description = "Python docstring reStructuredText (RST) validator" category = "dev" optional = false @@ -584,7 +584,7 @@ toy_text = ["scipy (>=1.4.1)"] [[package]] name = "identify" -version = "2.5.1" +version = "2.5.2" description = "File identification library for Python" category = "dev" optional = false @@ -603,7 +603,7 @@ python-versions = ">=3.5" [[package]] name = "imageio" -version = "2.19.3" +version = "2.20.0" description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." category = "main" optional = false @@ -656,7 +656,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest- [[package]] name = "importlib-resources" -version = "5.8.0" +version = "5.9.0" description = "Read resources from Python packages" category = "main" optional = false @@ -666,8 +666,8 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] [[package]] name = "iniconfig" @@ -679,7 +679,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.15.0" +version = "6.15.1" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -801,7 +801,7 @@ dev = ["hypothesis"] [[package]] name = "jsonschema" -version = "4.6.2" +version = "4.9.0" description = "An implementation of JSON Schema validation for Python" category = "main" optional = false @@ -810,6 +810,7 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=17.4.0" importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} +pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" [package.extras] @@ -839,7 +840,7 @@ test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-comm [[package]] name = "jupyter-core" -version = "4.11.0" +version = "4.11.1" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -883,7 +884,7 @@ test = ["coverage", "ipykernel", "pre-commit", "pytest-console-scripts", "pytest [[package]] name = "jupyterlab" -version = "3.4.3" +version = "3.4.4" description = "JupyterLab computational environment" category = "dev" optional = false @@ -895,12 +896,13 @@ jinja2 = ">=2.1" jupyter-core = "*" jupyter-server = ">=1.16,<2.0" jupyterlab-server = ">=2.10,<3.0" -nbclassic = ">=0.2,<1.0" +nbclassic = "*" +notebook = "<7" packaging = "*" tornado = ">=6.1.0" [package.extras] -test = ["check-manifest", "coverage", "jupyterlab-server", "pytest (>=6.0)", "pytest-cov", "pytest-console-scripts", "pytest-check-links (>=0.5)", "requests", "requests-cache", "virtualenv", "pre-commit"] +test = ["check-manifest", "coverage", "jupyterlab-server", "pre-commit", "pytest (>=6.0)", "pytest-cov", "pytest-console-scripts", "pytest-check-links (>=0.5)", "requests", "requests-cache", "virtualenv"] ui-tests = ["build"] [[package]] @@ -935,7 +937,7 @@ test = ["codecov", "ipykernel", "jupyter-server", "openapi-core (>=0.14.2)", "op [[package]] name = "kiwisolver" -version = "1.4.3" +version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false @@ -955,7 +957,7 @@ tornado = {version = "*", markers = "python_version > \"2.7\""} [[package]] name = "lz4" -version = "4.0.1" +version = "4.0.2" description = "LZ4 Bindings for Python" category = "main" optional = false @@ -978,14 +980,14 @@ python-versions = ">=3.7" mdurl = ">=0.1,<1.0" [package.extras] -benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"] -code_style = ["pre-commit (==2.6)"] -compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.3.6,<3.4.0)", "mistletoe (>=0.8.1,<0.9.0)", "mistune (>=2.0.2,<2.1.0)", "panflute (>=2.1.3,<2.2.0)"] -linkify = ["linkify-it-py (>=1.0,<2.0)"] -plugins = ["mdit-py-plugins"] +testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"] +rtd = ["sphinx-book-theme", "sphinx-design", "sphinx-copybutton", "sphinx", "pyyaml", "myst-parser", "attrs"] profiling = ["gprof2dot"] -rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx-book-theme"] -testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] +plugins = ["mdit-py-plugins"] +linkify = ["linkify-it-py (>=1.0,<2.0)"] +compare = ["panflute (>=2.1.3,<2.2.0)", "mistune (>=2.0.2,<2.1.0)", "mistletoe (>=0.8.1,<0.9.0)", "markdown (>=3.3.6,<3.4.0)", "commonmark (>=0.9.1,<0.10.0)"] +code_style = ["pre-commit (==2.6)"] +benchmarking = ["pytest-benchmark (>=3.2,<4.0)", "pytest", "psutil"] [[package]] name = "markupsafe" @@ -1027,11 +1029,11 @@ traitlets = "*" [[package]] name = "mccabe" -version = "0.6.1" +version = "0.7.0" description = "McCabe checker, plugin for flake8" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "mdit-py-plugins" @@ -1045,9 +1047,9 @@ python-versions = "~=3.6" markdown-it-py = ">=1.0.0,<3.0.0" [package.extras] +testing = ["pytest-regressions", "pytest-cov", "pytest (>=3.6,<4)", "coverage"] +rtd = ["sphinx-book-theme (>=0.1.0,<0.2.0)", "myst-parser (>=0.14.0,<0.15.0)"] code_style = ["pre-commit (==2.6)"] -rtd = ["myst-parser (>=0.14.0,<0.15.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"] -testing = ["coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"] [[package]] name = "mdurl" @@ -1075,7 +1077,7 @@ python-versions = "*" [[package]] name = "mypy" -version = "0.961" +version = "0.971" description = "Optional static typing for Python" category = "dev" optional = false @@ -1124,7 +1126,7 @@ testing = ["beautifulsoup4", "coverage", "pytest (>=6,<7)", "pytest-cov", "pytes [[package]] name = "nbclassic" -version = "0.4.2" +version = "0.4.3" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -1150,9 +1152,9 @@ tornado = ">=6.1" traitlets = ">=4.2.1" [package.extras] -docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +test = ["requests-unixsocket", "pytest-tornasync", "pytest-cov", "selenium (==4.1.5)", "nbval", "testpath", "requests", "coverage", "pytest"] json-logging = ["json-logging"] -test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium (==4.1.5)", "pytest-cov", "pytest-tornasync", "requests-unixsocket"] +docs = ["myst-parser", "sphinx-rtd-theme", "sphinxcontrib-github-alt", "nbsphinx", "sphinx"] [[package]] name = "nbclient" @@ -1232,7 +1234,7 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.8.4" +version = "2.8.5" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false @@ -1256,6 +1258,36 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.* [package.dependencies] setuptools = "*" +[[package]] +name = "notebook" +version = "6.4.12" +description = "A web-based notebook environment for interactive computing" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=5.3.4" +jupyter-core = ">=4.6.1" +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +json-logging = ["json-logging"] +test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] + [[package]] name = "notebook-shim" version = "0.1.0" @@ -1272,7 +1304,7 @@ test = ["pytest", "pytest-tornasync", "pytest-console-scripts"] [[package]] name = "numpy" -version = "1.23.0" +version = "1.23.1" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -1347,7 +1379,7 @@ python-versions = ">=2.6" [[package]] name = "pep8-naming" -version = "0.13.0" +version = "0.13.1" description = "Check PEP-8 naming conventions, plugin for flake8" category = "dev" optional = false @@ -1387,6 +1419,14 @@ python-versions = ">=3.7" docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] +[[package]] +name = "pkgutil-resolve-name" +version = "1.3.10" +description = "Resolve a name to an object." +category = "main" +optional = false +python-versions = ">=3.6" + [[package]] name = "platformdirs" version = "2.5.2" @@ -1408,12 +1448,12 @@ optional = false python-versions = ">=3.6" [package.extras] -dev = ["pre-commit", "tox"] -testing = ["pytest", "pytest-benchmark"] +testing = ["pytest-benchmark", "pytest"] +dev = ["tox", "pre-commit"] [[package]] name = "pre-commit" -version = "2.19.0" +version = "2.20.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false @@ -1509,11 +1549,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pycodestyle" -version = "2.8.0" +version = "2.9.0" description = "Python style guide checker" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [[package]] name = "pycparser" @@ -1539,11 +1579,11 @@ toml = ["toml"] [[package]] name = "pyflakes" -version = "2.4.0" +version = "2.5.0" description = "passive checker of Python programs" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [[package]] name = "pygame" @@ -1634,7 +1674,7 @@ python-versions = "*" [[package]] name = "pyupgrade" -version = "2.34.0" +version = "2.37.3" description = "A tool to automatically upgrade syntax for newer versions." category = "dev" optional = false @@ -1790,7 +1830,7 @@ python-versions = ">=3.5" [[package]] name = "safety" -version = "2.0.0" +version = "2.1.1" description = "Checks installed dependencies for known vulnerabilities and licenses." category = "dev" optional = false @@ -1830,14 +1870,14 @@ test = ["asv", "codecov", "flake8", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", " [[package]] name = "scipy" -version = "1.8.1" +version = "1.9.0" description = "SciPy: Scientific Library for Python" category = "main" optional = false -python-versions = ">=3.8,<3.11" +python-versions = ">=3.8,<3.12" [package.dependencies] -numpy = ">=1.17.3,<1.25.0" +numpy = ">=1.18.5,<1.25.0" [[package]] name = "send2trash" @@ -1854,7 +1894,7 @@ win32 = ["pywin32"] [[package]] name = "setuptools" -version = "63.1.0" +version = "63.2.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "main" optional = false @@ -1867,7 +1907,7 @@ testing-integration = ["pytest", "pytest-xdist", "pytest-enabler", "virtualenv ( [[package]] name = "setuptools-scm" -version = "7.0.4" +version = "7.0.5" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false @@ -1925,7 +1965,7 @@ python-versions = ">=3.6" [[package]] name = "sphinx" -version = "5.0.2" +version = "5.1.1" description = "Python documentation generator" category = "dev" optional = false @@ -1935,7 +1975,7 @@ python-versions = ">=3.6" alabaster = ">=0.7,<0.8" babel = ">=1.3" colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} -docutils = ">=0.14,<0.19" +docutils = ">=0.14,<0.20" imagesize = "*" importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} Jinja2 = ">=2.3" @@ -1952,7 +1992,7 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.950)", "docutils-stubs", "types-typed-ast", "types-requests"] +lint = ["flake8 (>=3.5.0)", "flake8-comprehensions", "flake8-bugbear", "isort", "mypy (>=0.971)", "sphinx-lint", "docutils-stubs", "types-typed-ast", "types-requests"] test = ["pytest (>=4.6)", "html5lib", "cython", "typed-ast"] [[package]] @@ -2007,8 +2047,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-devhelp" @@ -2019,8 +2059,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-htmlhelp" @@ -2031,8 +2071,8 @@ optional = false python-versions = ">=3.6" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] -test = ["pytest", "html5lib"] +test = ["html5lib", "pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-jsmath" @@ -2043,7 +2083,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["pytest", "flake8", "mypy"] +test = ["mypy", "flake8", "pytest"] [[package]] name = "sphinxcontrib-qthelp" @@ -2054,8 +2094,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-serializinghtml" @@ -2087,11 +2127,11 @@ tests = ["pytest", "typeguard", "pygments", "littleutils", "cython"] [[package]] name = "stevedore" -version = "3.5.0" +version = "4.0.0" description = "Manage dynamic plugins for Python applications" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" [package.dependencies] pbr = ">=2.0.0,<2.1.0 || >2.1.0" @@ -2137,7 +2177,7 @@ test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"] [[package]] name = "tifffile" -version = "2022.5.4" +version = "2022.7.28" description = "Read and write TIFF files" category = "main" optional = false @@ -2147,7 +2187,7 @@ python-versions = ">=3.8" numpy = ">=1.19.2" [package.extras] -all = ["imagecodecs (>=2021.11.20)", "matplotlib (>=3.3)", "lxml"] +all = ["imagecodecs (>=2022.2.22)", "matplotlib (>=3.3)", "lxml"] [[package]] name = "tinycss2" @@ -2240,7 +2280,7 @@ python-versions = ">=3.7" [[package]] name = "urllib3" -version = "1.26.10" +version = "1.26.11" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "main" optional = false @@ -2253,21 +2293,20 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] name = "virtualenv" -version = "20.15.1" +version = "20.16.2" description = "Virtual Python Environment builder" category = "main" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = ">=3.6" [package.dependencies] distlib = ">=0.3.1,<1" filelock = ">=3.2,<4" platformdirs = ">=2,<3" -six = ">=1.9.0,<2" [package.extras] docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"] -testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"] +testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "packaging (>=20.0)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)"] [[package]] name = "wcwidth" @@ -2311,11 +2350,11 @@ numpy = "*" [[package]] name = "xdoctest" -version = "1.0.0" +version = "1.0.1" description = "A rewrite of the builtin doctest module" category = "dev" optional = false -python-versions = "*" 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["poetry-core>=1.1.0b3"] build-backend = "poetry.core.masonry.api"