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cytobox

A toolkit for analyzing single cell RNA-seq data created by the Kleinman Lab. The legacy package, cytokit, which is no longer being developed, is available at https://github.com/sjessa/cytokit/. cytobox is designed to work with Seurat objects and many functions are modeled on commonly used Seurat functions, to allow for additional customization.

Note: cytobox currently works with Seurat V2.

Installation

You will need to install devtools, and then run:

devtools::install_github("fungenomics/cytobox", build_vignettes = TRUE)