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Running dropSeqPIpe on 10X data #106

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suminwei2772 opened this issue May 8, 2020 · 1 comment
Open

Running dropSeqPIpe on 10X data #106

suminwei2772 opened this issue May 8, 2020 · 1 comment

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@suminwei2772
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Hi,
I am hoping to run dropSeqPipe on some 10X data (V1 chemistry).
I was wondering if I would need to supply a different adapters.fa file (not the default one that comes with dropSeqPipe) in this case? Would I need to make any other changes to the input files?
Thank you,
Lisa

@Hoohm
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Hoohm commented Jun 24, 2020

Hey @suminwei2772
I would check this github page, it will help out with any specifics linked to the V1 chemistry you need.

https://github.com/Teichlab/scg_lib_structs

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