reproducing the computational results

[laurentperrinet]

Hi,

I am trying to reproduce your results, cloned the repo and get that error when running snakemake:

❯ snakemake -c1
Wildcard constraints in inputs are ignored. (rule: collect_data)
SyntaxError:
Not all output, log and benchmark files of rule find_groups_nest contain the same wildcards. This is crucial though, in order to avoid that two or more jobs write to the same file.
  File "/Users/laurentperrinet/tmp/reproducing-polychronization/Snakefile", line 64, in <module>
  File "/Users/laurentperrinet/tmp/reproducing-polychronization/nest.rules", line 117, in <module>

any clue?
Thanks,
Laurent

[abigailm]

Hi Laurent,
it turns out this was an issue caused by changes in snakemake since the repository was set up. @essink has fixed it, but there could be some more minor issues - would you like to pull and have another go at it, and let us know if you run into any other issues.
All the best,
Abigail