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migrate-pedLabs.ktr
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migrate-pedLabs.ktr
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<?xml version="1.0" encoding="UTF-8"?>
<transformation>
<info>
<name>migrate-pedLabs</name>
<description/>
<extended_description/>
<trans_version/>
<trans_type>Normal</trans_type>
<directory>/</directory>
<parameters>
</parameters>
<log>
<trans-log-table>
<connection/>
<schema/>
<table/>
<size_limit_lines/>
<interval/>
<timeout_days/>
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STATUS</id>
<enabled>Y</enabled>
<name>STATUS</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
<subject/>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
<subject/>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
<subject/>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
<subject/>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
<subject/>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
<subject/>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>STARTDATE</id>
<enabled>Y</enabled>
<name>STARTDATE</name>
</field>
<field>
<id>ENDDATE</id>
<enabled>Y</enabled>
<name>ENDDATE</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>DEPDATE</id>
<enabled>Y</enabled>
<name>DEPDATE</name>
</field>
<field>
<id>REPLAYDATE</id>
<enabled>Y</enabled>
<name>REPLAYDATE</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>Y</enabled>
<name>LOG_FIELD</name>
</field>
<field>
<id>EXECUTING_SERVER</id>
<enabled>N</enabled>
<name>EXECUTING_SERVER</name>
</field>
<field>
<id>EXECUTING_USER</id>
<enabled>N</enabled>
<name>EXECUTING_USER</name>
</field>
<field>
<id>CLIENT</id>
<enabled>N</enabled>
<name>CLIENT</name>
</field>
</trans-log-table>
<perf-log-table>
<connection/>
<schema/>
<table/>
<interval/>
<timeout_days/>
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>SEQ_NR</id>
<enabled>Y</enabled>
<name>SEQ_NR</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>INPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>INPUT_BUFFER_ROWS</name>
</field>
<field>
<id>OUTPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>OUTPUT_BUFFER_ROWS</name>
</field>
</perf-log-table>
<channel-log-table>
<connection/>
<schema/>
<table/>
<timeout_days/>
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>LOGGING_OBJECT_TYPE</id>
<enabled>Y</enabled>
<name>LOGGING_OBJECT_TYPE</name>
</field>
<field>
<id>OBJECT_NAME</id>
<enabled>Y</enabled>
<name>OBJECT_NAME</name>
</field>
<field>
<id>OBJECT_COPY</id>
<enabled>Y</enabled>
<name>OBJECT_COPY</name>
</field>
<field>
<id>REPOSITORY_DIRECTORY</id>
<enabled>Y</enabled>
<name>REPOSITORY_DIRECTORY</name>
</field>
<field>
<id>FILENAME</id>
<enabled>Y</enabled>
<name>FILENAME</name>
</field>
<field>
<id>OBJECT_ID</id>
<enabled>Y</enabled>
<name>OBJECT_ID</name>
</field>
<field>
<id>OBJECT_REVISION</id>
<enabled>Y</enabled>
<name>OBJECT_REVISION</name>
</field>
<field>
<id>PARENT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>PARENT_CHANNEL_ID</name>
</field>
<field>
<id>ROOT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>ROOT_CHANNEL_ID</name>
</field>
</channel-log-table>
<step-log-table>
<connection/>
<schema/>
<table/>
<timeout_days/>
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>N</enabled>
<name>LOG_FIELD</name>
</field>
</step-log-table>
<metrics-log-table>
<connection/>
<schema/>
<table/>
<timeout_days/>
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>METRICS_DATE</id>
<enabled>Y</enabled>
<name>METRICS_DATE</name>
</field>
<field>
<id>METRICS_CODE</id>
<enabled>Y</enabled>
<name>METRICS_CODE</name>
</field>
<field>
<id>METRICS_DESCRIPTION</id>
<enabled>Y</enabled>
<name>METRICS_DESCRIPTION</name>
</field>
<field>
<id>METRICS_SUBJECT</id>
<enabled>Y</enabled>
<name>METRICS_SUBJECT</name>
</field>
<field>
<id>METRICS_TYPE</id>
<enabled>Y</enabled>
<name>METRICS_TYPE</name>
</field>
<field>
<id>METRICS_VALUE</id>
<enabled>Y</enabled>
<name>METRICS_VALUE</name>
</field>
</metrics-log-table>
</log>
<maxdate>
<connection/>
<table/>
<field/>
<offset>0.0</offset>
<maxdiff>0.0</maxdiff>
</maxdate>
<size_rowset>10000</size_rowset>
<sleep_time_empty>50</sleep_time_empty>
<sleep_time_full>50</sleep_time_full>
<unique_connections>N</unique_connections>
<feedback_shown>Y</feedback_shown>
<feedback_size>50000</feedback_size>
<using_thread_priorities>Y</using_thread_priorities>
<shared_objects_file/>
<capture_step_performance>N</capture_step_performance>
<step_performance_capturing_delay>1000</step_performance_capturing_delay>
<step_performance_capturing_size_limit>100</step_performance_capturing_size_limit>
<dependencies>
</dependencies>
<partitionschemas>
</partitionschemas>
<slaveservers>
</slaveservers>
<clusterschemas>
</clusterschemas>
<created_user>-</created_user>
<created_date>2020/03/28 10:53:52.322</created_date>
<modified_user>-</modified_user>
<modified_date>2020/03/28 10:53:52.322</modified_date>
<key_for_session_key>H4sIAAAAAAAAAAMAAAAAAAAAAAA=</key_for_session_key>
<is_key_private>N</is_key_private>
</info>
<notepads>
</notepads>
<connection>
<name>Openmrs HTY</name>
<server>${ISANTE-PLUS-DB-HOST}</server>
<type>MYSQL</type>
<access>Native</access>
<database>${ISANTE-PLUS-DB-NAME}</database>
<port>${ISANTE-PLUS-DB-PORT}</port>
<username>${ISANTE-PLUS-DB-USER}</username>
<password>${ISANTE-PLUS-DB-PASSWORD}</password>
<servername/>
<data_tablespace/>
<index_tablespace/>
<attributes>
<attribute>
<code>FORCE_IDENTIFIERS_TO_LOWERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>FORCE_IDENTIFIERS_TO_UPPERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>IS_CLUSTERED</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>PORT_NUMBER</code>
<attribute>${ISANTE-PLUS-DB-PORT}</attribute>
</attribute>
<attribute>
<code>PRESERVE_RESERVED_WORD_CASE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>QUOTE_ALL_FIELDS</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>STREAM_RESULTS</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_BOOLEAN_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_TIMESTAMP_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>USE_POOLING</code>
<attribute>N</attribute>
</attribute>
</attributes>
</connection>
<order>
<hop>
<from>Columns</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Filter rows</from>
<to>Save Records Processed</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Group by</from>
<to>Identify last row in a stream</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Identify last row in a stream</from>
<to>Filter rows</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Join rows (cartesian product)</from>
<to>Fetch Last ETL Excution Date</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Load iSante ID Identifier Type</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Load iSanteLocation Location Attribute</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Mappings</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Replace in string</from>
<to>Save on CSV</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Save on CSV</from>
<to>Group by</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Last ETL Excution Date</from>
<to>Database Join Groups</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Database Join Groups</from>
<to>Database join Coded</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Units</from>
<to>Map Units</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Database join Coded</from>
<to>Fetch Age</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Age</from>
<to>Fetch Units</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Map Units</from>
<to>Fetch Result</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Result</from>
<to>Map Result</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Map Result</from>
<to>Decompose Encounter Datetime</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Person Identifier</from>
<to>Fetch iSante Location</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Decompose Encounter Datetime</from>
<to>Fetch Person Identifier</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch dbSite</from>
<to>Fetch Seqnum</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch iSante Location</from>
<to>Fetch dbSite</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Seqnum</from>
<to>Replace in string</to>
<enabled>Y</enabled>
</hop>
</order>
<step>
<name>Columns</name>
<type>DataGrid</type>
<description/>
<distribute>Y</distribute>
<custom_distribution/>
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name/>
</partitioning>
<fields>
<field>
<name>table_name</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>siteCode</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>patientID</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>visitDateDd</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>visitDateMm</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>visitDateYy</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>seqNum</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_na</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_zero</name>
<type>Integer</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_one</name>
<type>Integer</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsID</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsOrdered</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsResult</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsResultOrder</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsResultAge</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsResultAgeUnits</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>pedLabsSlot</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>dbSite</name>
<type>String</type>
<format/>
<currency/>
<decimal/>
<group/>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
</fields>
<data>
<line>
<item>pedLabs</item>
<item>siteCode</item>
<item>patientID</item>
<item>visitDateDd</item>
<item>visitDateMm</item>
<item>visitDateYy</item>
<item>seqNum</item>
<item/>
<item>0</item>
<item>1</item>
<item>pedLabsID</item>
<item>pedLabsOrdered</item>
<item>pedLabsResult</item>
<item>pedLabsResultOrder</item>
<item>pedLabsResultAge</item>
<item>pedLabsResultAgeUnits</item>
<item>pedLabsSlot</item>
<item>dbSite</item>
</line>
</data>
<attributes/>
<cluster_schema/>
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>59</xloc>
<yloc>55</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Database Join Groups</name>
<type>DBJoin</type>
<description/>
<distribute>Y</distribute>
<custom_distribution/>
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name/>
</partitioning>
<connection>Openmrs HTY</connection>
<rowlimit>0</rowlimit>
<sql>select obs.obs_id obs_group_id from obs
join encounter on encounter.encounter_id = obs.encounter_id
join encounter_type on encounter_type.encounter_type_id = encounter.encounter_type
and encounter_type.uuid = '349ae0b4-65c1-4122-aa06-480f186c8350'
where obs.concept_id = (select concept.concept_id from concept where concept.uuid = ?)
and encounter.voided = false
and (encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or obs.date_voided >= ?
or obs.date_created >= ?)
</sql>
<outer_join>N</outer_join>
<replace_vars>N</replace_vars>
<parameter>
<field>
<name>concept_group</name>
<type>Integer</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
</parameter>
<attributes/>
<cluster_schema/>
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>704</xloc>
<yloc>144</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Database join Coded</name>
<type>DBJoin</type>
<description/>
<distribute>Y</distribute>
<custom_distribution/>
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name/>
</partitioning>
<connection>Openmrs HTY</connection>
<rowlimit>0</rowlimit>
<sql>select obs.person_id, obs.encounter_id, encounter.location_id isante_plus_location_id, encounter.encounter_datetime from obs
join encounter on encounter.encounter_id = obs.encounter_id
where obs.obs_group_id = ?
and obs.concept_id = ?
and obs.value_coded = ?
and encounter.voided = false
and obs.voided = false
and (encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or obs.date_voided >= ?
or obs.date_created >= ?)
</sql>
<outer_join>N</outer_join>
<replace_vars>N</replace_vars>
<parameter>
<field>
<name>obs_group_id</name>
<type>Integer</type>
</field>
<field>
<name>test_id_isante_plus</name>
<type>Integer</type>
</field>
<field>
<name>test_result_isante_plus</name>
<type>Integer</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>