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adding ROI and spot extraction in the pipeline #13

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limingtan opened this issue Mar 21, 2022 · 0 comments
Open

adding ROI and spot extraction in the pipeline #13

limingtan opened this issue Mar 21, 2022 · 0 comments
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@cgoina
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enhancement New feature or request

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@limingtan
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limingtan commented Mar 21, 2022 •
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New feature

Adding ROI and spot extraction in the pipeline.

Proposal

This will add ROI information into the nextflow tower output.

Usage scenario

the spatial and morphological information of segmented cells will be available in the nextflow pipeline output.

Suggest implementation

Add from below:
https://github.com/multiFISH/EASI-FISH/blob/master/data_processing/2_ROI_and_spot_extraction.ipynb
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@cgoina cgoina

Labels
enhancement New feature or request
Projects
EASI-FISH Data Analysis Pipeline
Status: Todo
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@cgoina @limingtan