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Add distributed CellPose segmentation #39

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krokicki opened this issue Jun 1, 2023 · 0 comments
Open

Add distributed CellPose segmentation #39

krokicki opened this issue Jun 1, 2023 · 0 comments
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@cgoina
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enhancement New feature or request

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@krokicki
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krokicki commented Jun 1, 2023 •
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There are some implementations for distributed CellPose, e.g.
MouseLand/cellpose#244
MouseLand/cellpose#408

We need to implement one of these into the pipeline as an alternative segmentation method, just like Airlocalize and RS-FISH are implemented. We'll add a parameter --use_cellpose that will be a boolean option, for now disabled by default.
@krokicki krokicki converted this from a draft issue Jun 1, 2023
@krokicki krokicki added the enhancement New feature or request label Jun 1, 2023
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enhancement New feature or request
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EASI-FISH Data Analysis Pipeline
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@krokicki @cgoina