From 8e78bc004274b0e4f30ee3b57526d5d0da2ea64e Mon Sep 17 00:00:00 2001 From: Stephan Preibisch Date: Thu, 8 Aug 2024 11:12:46 -0400 Subject: [PATCH 1/6] change license to GPL-v3 --- src/content/projects/stim.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/content/projects/stim.md b/src/content/projects/stim.md index 02b9df4..9649868 100644 --- a/src/content/projects/stim.md +++ b/src/content/projects/stim.md @@ -17,7 +17,7 @@ youtube url: https://www.youtube.com/watch?v=GhsKgM-go18 youtube caption: STIM - Interactive alignment of spatial transcriptomics slices (e.g. Visium) development team: [Scientific Computing Software] programming language: [Java] -open source license: [GPL-2.0, GPL-3.0] +open source license: [GPL-3.0] software type: [Command line application, Framework, Native application] use case: [Spatial transcriptomics, Sequence analysis] usage environment: [Local installation] From bd0765af55da4bcf1fb8f6a2dfb170496657ce84 Mon Sep 17 00:00:00 2001 From: Stephan Preibisch Date: Thu, 8 Aug 2024 11:13:19 -0400 Subject: [PATCH 2/6] fix typo --- src/content/projects/stim.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/content/projects/stim.md b/src/content/projects/stim.md index 9649868..1a06732 100644 --- a/src/content/projects/stim.md +++ b/src/content/projects/stim.md @@ -1,6 +1,6 @@ --- title: Spatial Transcriptomics as Images Project (STIM) -tagline: A framework for storing, (interactively) viewing, amd aligning spatial transcriptomics data. +tagline: A framework for storing, (interactively) viewing, and aligning spatial transcriptomics data. maintainer: Preibisch, Innerberger et al. preferred contact method: https://github.com/PreibischLab/STIM/issues project type: [OSSI - current] From 939f49fc4a118dad6fb0256973e621cd774b6a74 Mon Sep 17 00:00:00 2001 From: Stephan Preibisch Date: Thu, 8 Aug 2024 11:16:07 -0400 Subject: [PATCH 3/6] changed link to a specific video in the playlist (hopefully playlist is visible) --- src/content/projects/bigstitcher.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/content/projects/bigstitcher.md b/src/content/projects/bigstitcher.md index efe8e12..11acafc 100644 --- a/src/content/projects/bigstitcher.md +++ b/src/content/projects/bigstitcher.md @@ -13,7 +13,7 @@ how to cite link: https://doi.org/10.1038/s41592-019-0501-0 how to cite text: "D. Hörl, F. Rojas Rusak, F. Preusser, P. Tillberg P, N. Randel, R.K. Chhetri, A. Cardona, P.J. Keller, H. Harz, H. Leonhardt, M. Treier & S. Preibisch, Nature Methods 16, 870–874 (2019)." image file: ./bigstitcher-1.png image caption: Example of a cleared, tiled mouse brain acquisitions stitched with BigStitcher -youtube url: https://www.youtube.com/playlist?list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE +youtube url: https://www.youtube.com/watch?v=kz9p2xtPfTA&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE&index=7 youtube caption: BigStitcher YouTube HowTo Channel. development team: [Scientific Computing Software] programming language: [Java] From 24d6ee4a011514f973b8a7fa5f89d1098279377a Mon Sep 17 00:00:00 2001 From: Allison Truhlar Date: Fri, 9 Aug 2024 09:51:45 -0400 Subject: [PATCH 4/6] fix: adds YT params to enable playlist mode --- src/content/projects/bigstitcher.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/content/projects/bigstitcher.md b/src/content/projects/bigstitcher.md index 11acafc..f6469cd 100644 --- a/src/content/projects/bigstitcher.md +++ b/src/content/projects/bigstitcher.md @@ -13,8 +13,9 @@ how to cite link: https://doi.org/10.1038/s41592-019-0501-0 how to cite text: "D. Hörl, F. Rojas Rusak, F. Preusser, P. Tillberg P, N. Randel, R.K. Chhetri, A. Cardona, P.J. Keller, H. Harz, H. Leonhardt, M. Treier & S. Preibisch, Nature Methods 16, 870–874 (2019)." image file: ./bigstitcher-1.png image caption: Example of a cleared, tiled mouse brain acquisitions stitched with BigStitcher -youtube url: https://www.youtube.com/watch?v=kz9p2xtPfTA&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE&index=7 +youtube url: https://www.youtube.com/watch?v=kz9p2xtPfTA youtube caption: BigStitcher YouTube HowTo Channel. +youtube params: listtype=Playlist&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE&pp=iAQB development team: [Scientific Computing Software] programming language: [Java] open source license: [BSD-3 Clause] From 74a70acb459613cb11db44324e2e4bfcd64f30f8 Mon Sep 17 00:00:00 2001 From: Allison Truhlar Date: Mon, 12 Aug 2024 11:48:23 -0400 Subject: [PATCH 5/6] content: update YT playlist to start with first video --- src/content/projects/bigstitcher.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/content/projects/bigstitcher.md b/src/content/projects/bigstitcher.md index f6469cd..d6966de 100644 --- a/src/content/projects/bigstitcher.md +++ b/src/content/projects/bigstitcher.md @@ -13,9 +13,9 @@ how to cite link: https://doi.org/10.1038/s41592-019-0501-0 how to cite text: "D. Hörl, F. Rojas Rusak, F. Preusser, P. Tillberg P, N. Randel, R.K. Chhetri, A. Cardona, P.J. Keller, H. Harz, H. Leonhardt, M. Treier & S. Preibisch, Nature Methods 16, 870–874 (2019)." image file: ./bigstitcher-1.png image caption: Example of a cleared, tiled mouse brain acquisitions stitched with BigStitcher -youtube url: https://www.youtube.com/watch?v=kz9p2xtPfTA +youtube url: https://www.youtube.com/watch?v=TLIGvJYyogI youtube caption: BigStitcher YouTube HowTo Channel. -youtube params: listtype=Playlist&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE&pp=iAQB +youtube params: listtype=Playlist&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE development team: [Scientific Computing Software] programming language: [Java] open source license: [BSD-3 Clause] From f7a26e9c7e288a587e4cc409479a855514757416 Mon Sep 17 00:00:00 2001 From: Allison Truhlar Date: Mon, 12 Aug 2024 11:55:12 -0400 Subject: [PATCH 6/6] Revert "content: update YT playlist to start with first video" This reverts commit 74a70acb459613cb11db44324e2e4bfcd64f30f8. --- src/content/projects/bigstitcher.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/content/projects/bigstitcher.md b/src/content/projects/bigstitcher.md index d6966de..f6469cd 100644 --- a/src/content/projects/bigstitcher.md +++ b/src/content/projects/bigstitcher.md @@ -13,9 +13,9 @@ how to cite link: https://doi.org/10.1038/s41592-019-0501-0 how to cite text: "D. Hörl, F. Rojas Rusak, F. Preusser, P. Tillberg P, N. Randel, R.K. Chhetri, A. Cardona, P.J. Keller, H. Harz, H. Leonhardt, M. Treier & S. Preibisch, Nature Methods 16, 870–874 (2019)." image file: ./bigstitcher-1.png image caption: Example of a cleared, tiled mouse brain acquisitions stitched with BigStitcher -youtube url: https://www.youtube.com/watch?v=TLIGvJYyogI +youtube url: https://www.youtube.com/watch?v=kz9p2xtPfTA youtube caption: BigStitcher YouTube HowTo Channel. -youtube params: listtype=Playlist&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE +youtube params: listtype=Playlist&list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE&pp=iAQB development team: [Scientific Computing Software] programming language: [Java] open source license: [BSD-3 Clause]