Create model templates using extended biochemistry

[mmundy42]

• Write script to build model template from source files
• Write script to generate SOLR tables from source files
• Create gram positive model template
• Create gram negative model template
• Create plant model template
• Create archaea model template
• Update modeling code to only use model template (should not directly use biochemistry)
• Update modeling code to handle translation of compartments from compartment-free biochemistry to model templates (and support multi-character compartment IDs?)