diff --git a/include/forcing/AorcForcing.hpp b/include/forcing/AorcForcing.hpp index e813090a7a..58ea21753d 100644 --- a/include/forcing/AorcForcing.hpp +++ b/include/forcing/AorcForcing.hpp @@ -28,8 +28,6 @@ #include -//using namespace std// causes build error on gcc-12 with boost::geometry - /** * @brief forcing_params providing configuration information for forcing time period and source. */ diff --git a/include/forcing/DeferredWrappedProvider.hpp b/include/forcing/DeferredWrappedProvider.hpp index da063cc401..5ffd86674a 100644 --- a/include/forcing/DeferredWrappedProvider.hpp +++ b/include/forcing/DeferredWrappedProvider.hpp @@ -7,8 +7,6 @@ #include #include "WrappedDataProvider.hpp" -using namespace std; - namespace data_access { /** @@ -41,14 +39,14 @@ namespace data_access { * * @param providedOutputs The collection of the names of outputs this instance will need to provide. */ - explicit DeferredWrappedProvider(vector providedOutputs) : WrappedDataProvider(nullptr), providedOutputs(std::move(providedOutputs)) { } + explicit DeferredWrappedProvider(std::vector providedOutputs) : WrappedDataProvider(nullptr), providedOutputs(std::move(providedOutputs)) { } /** * Convenience constructor for when there is only one provided output name. * * @param outputName The name of the single output this instance will need to provide. */ - explicit DeferredWrappedProvider(const string& outputName) : DeferredWrappedProvider(vector(1)) { + explicit DeferredWrappedProvider(const std::string& outputName) : DeferredWrappedProvider(std::vector(1)) { providedOutputs[0] = outputName; } @@ -85,7 +83,7 @@ namespace data_access { * * @return The message string for the last call to @ref setWrappedProvider. */ - inline const string &getSetMessage() { + inline const std::string &getSetMessage() { return setMessage; } @@ -139,8 +137,8 @@ namespace data_access { } // Confirm this will provide everything needed - const vector &available = provider->get_available_variable_names(); - for (const string &requiredName : providedOutputs) { + const std::vector &available = provider->get_available_variable_names(); + for (const std::string &requiredName : providedOutputs) { if (std::find(available.begin(), available.end(), requiredName) == available.end()) { setMessage = "Given provider does not provide the required " + requiredName; return false; @@ -155,7 +153,7 @@ namespace data_access { protected: /** The collection of names of the outputs this type can/will be able to provide from its wrapped source. */ - vector providedOutputs; + std::vector providedOutputs; /** * A message providing information from the last @ref setWrappedProvider call. @@ -163,7 +161,7 @@ namespace data_access { * The value will be empty if the function returned ``true``. If it returned ``false``, this will have an * info message set explaining more detail on the failure. */ - string setMessage; + std::string setMessage; }; } diff --git a/include/forcing/OptionalWrappedDataProvider.hpp b/include/forcing/OptionalWrappedDataProvider.hpp index e09c12f6a5..1ca37330fd 100644 --- a/include/forcing/OptionalWrappedDataProvider.hpp +++ b/include/forcing/OptionalWrappedDataProvider.hpp @@ -5,8 +5,6 @@ #include "DeferredWrappedProvider.hpp" -using namespace std; - namespace data_access { /** @@ -55,7 +53,7 @@ namespace data_access { * @param providedOuts The collection of the names of outputs this instance will need to provide. * @param defaultVals Mapping of some or all provided output defaults, keyed by output name. */ - OptionalWrappedDataProvider(vector providedOuts, map defaultVals) + OptionalWrappedDataProvider(std::vector providedOuts, std::map defaultVals) : DeferredWrappedProvider(std::move(providedOuts)), defaultValues(std::move(defaultVals)) { // Validate the provided map of default values to ensure there aren't any unrecognized keys, as this @@ -64,14 +62,14 @@ namespace data_access { for (const auto &def_vals_it : defaultValues) { auto name_it = find(providedOutputs.begin(), providedOutputs.end(), def_vals_it.first); if (name_it == providedOutputs.end()) { - string msg = "Invalid default values for OptionalWrappedDataProvider: default value given for " + std::string msg = "Invalid default values for OptionalWrappedDataProvider: default value given for " "unknown output with name '" + def_vals_it.first + "' (expected names are [" + providedOutputs[0]; for (int i = 1; i < providedOutputs.size(); ++i) { msg += ", " + providedOutputs[i]; } msg += "])"; - throw runtime_error(msg); + throw std::runtime_error(msg); } } } @@ -87,8 +85,8 @@ namespace data_access { * @param defaultWaits Map of the number of default usages for each provided output that the instance must wait * before using values from the backing provider. */ - OptionalWrappedDataProvider(vector providedOuts, map defaultVals, - map defaultWaits) + OptionalWrappedDataProvider(std::vector providedOuts, std::map defaultVals, + std::map defaultWaits) : OptionalWrappedDataProvider(std::move(providedOuts), std::move(defaultVals)) { // Validate that all keys/names in the defaultWaits map have corresponding key in defaultValues @@ -97,7 +95,7 @@ namespace data_access { for (const auto &wait_it : defaultWaits) { auto def_it = defaultValues.find(wait_it.first); if (def_it == defaultValues.end()) { - string msg = "Invalid default usage waits for OptionalWrappedDataProvider: wait count given for " + std::string msg = "Invalid default usage waits for OptionalWrappedDataProvider: wait count given for " "non-default output '" + wait_it.first + "' (outputs with defaults set are ["; def_it = defaultValues.begin(); msg += def_it->first; @@ -107,7 +105,7 @@ namespace data_access { def_it++; } msg += "])"; - throw runtime_error(msg); + throw std::runtime_error(msg); } } // Assuming the mapping is valid, set it for the instance @@ -120,15 +118,15 @@ namespace data_access { * * @param providedOutputs The collection of the names of outputs this instance will need to provide. */ - explicit OptionalWrappedDataProvider(vector providedOutputs) - : OptionalWrappedDataProvider(std::move(providedOutputs), map()) { } + explicit OptionalWrappedDataProvider(std::vector providedOutputs) + : OptionalWrappedDataProvider(std::move(providedOutputs), std::map()) { } /** * Convenience constructor for when there is only one provided output name, which does not have a default. * * @param outputName The name of the single output this instance will need to provide. */ - explicit OptionalWrappedDataProvider(const string& outputName) : OptionalWrappedDataProvider(vector(1)) { + explicit OptionalWrappedDataProvider(const std::string& outputName) : OptionalWrappedDataProvider(std::vector(1)) { providedOutputs[0] = outputName; } @@ -145,7 +143,7 @@ namespace data_access { * @param defaultUsageWait The number of default usages that the instance must wait before using values from * the backing provider. */ - OptionalWrappedDataProvider(const string& outputName, double defaultValue, int defaultUsageWait) + OptionalWrappedDataProvider(const std::string& outputName, double defaultValue, int defaultUsageWait) : OptionalWrappedDataProvider(outputName) { defaultValues[providedOutputs[0]] = defaultValue; @@ -160,7 +158,7 @@ namespace data_access { * @param outputName The name of the single output this instance will need to provide. * @param defaultValue The default to associate with the given output. */ - OptionalWrappedDataProvider(const string& outputName, double defaultValue) + OptionalWrappedDataProvider(const std::string& outputName, double defaultValue) : OptionalWrappedDataProvider(outputName, defaultValue, 0) { } /** @@ -194,18 +192,18 @@ namespace data_access { */ double get_value(const CatchmentAggrDataSelector& selector, data_access::ReSampleMethod m) override { - string output_name = selector.get_variable_name(); + std::string output_name = selector.get_variable_name(); time_t init_time = selector.get_init_time(); const long duration_s = selector.get_duration_secs(); - const string output_units = selector.get_output_units(); + const std::string output_units = selector.get_output_units(); // Balk if not in this instance's collection of outputs if (find(providedOutputs.begin(), providedOutputs.end(), output_name) == providedOutputs.end()) { - throw runtime_error("Unknown output " + output_name + " requested from wrapped provider"); + throw std::runtime_error("Unknown output " + output_name + " requested from wrapped provider"); } // Balk if this instance is not ready if (!isReadyToProvideData()) { - throw runtime_error("Cannot get value for " + output_name + throw std::runtime_error("Cannot get value for " + output_name + " from optional wrapped provider before it is ready"); } @@ -248,7 +246,7 @@ namespace data_access { * @see get_value * @see recordUsingDefault */ - bool isDefaultOverride(const string &output_name) { + bool isDefaultOverride(const std::string &output_name) { // First, there must be a default, and there must be something to override if (!isSuppliedWithDefault(output_name) || !isSuppliedByWrappedProvider(output_name)) { return false; @@ -284,7 +282,7 @@ namespace data_access { * @param outputName The output in question. * @return Whether a default value is available for this output. */ - inline bool isSuppliedWithDefault(const string &outputName) { + inline bool isSuppliedWithDefault(const std::string &outputName) { return defaultValues.find(outputName) != defaultValues.end(); } @@ -323,7 +321,7 @@ namespace data_access { // Check this provides everything needed, accounting for defaults (and also tallying the outputs provided) unsigned short providedByProviderCount = 0; - for (const string &requiredName : providedOutputs) { + for (const std::string &requiredName : providedOutputs) { // If supplied by the provider, increment our count and continue to the next required output name if (isSuppliedByProvider(requiredName, provider)) { ++providedByProviderCount; @@ -367,7 +365,7 @@ namespace data_access { * * @param output_name The name of the output for which a default was used. */ - virtual void recordUsingDefault(const string &output_name) { + virtual void recordUsingDefault(const std::string &output_name) { // Don't bother doing anything if there aren't waits assigned for this output // Also, in this implementation, don't count usages until there is a backing provider that can provide this auto waits_it = defaultUsageWaits.find(output_name); @@ -389,21 +387,21 @@ namespace data_access { /** * A collection of mapped default values for some or all of the provided outputs. */ - map defaultValues; + std::map defaultValues; /** * The number of times a default value should still be used before beginning to proxy a backing provider value. * * Note than all elements should have values greater than zero. Any elements that would have their value * reduced to zero should instead be removed. */ - map defaultUsageWaits; + std::map defaultUsageWaits; - static bool isSuppliedByProvider(const string &outputName, GenericDataProvider *provider) { - const vector &available = provider->get_available_variable_names(); + static bool isSuppliedByProvider(const std::string &outputName, GenericDataProvider *provider) { + const std::vector &available = provider->get_available_variable_names(); return find(available.begin(), available.end(), outputName) != available.end(); } - inline bool isSuppliedByWrappedProvider(const string &outputName) { + inline bool isSuppliedByWrappedProvider(const std::string &outputName) { return wrapped_provider != nullptr && isSuppliedByProvider(outputName, wrapped_provider); } diff --git a/include/realizations/catchment/AbstractCLibBmiAdapter.hpp b/include/realizations/catchment/AbstractCLibBmiAdapter.hpp index a723bee021..0eea6ed911 100644 --- a/include/realizations/catchment/AbstractCLibBmiAdapter.hpp +++ b/include/realizations/catchment/AbstractCLibBmiAdapter.hpp @@ -26,7 +26,7 @@ namespace models { * @param registration_func The name for the @see bmi_registration_function. * @param output The output stream handler. */ - AbstractCLibBmiAdapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, + AbstractCLibBmiAdapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output) : Bmi_Adapter(type_name, std::move(bmi_init_config), std::move(forcing_file_path), @@ -91,7 +91,7 @@ namespace models { if (!utils::FileChecker::file_is_readable(bmi_lib_file)) { //Try alternative extension... size_t idx = bmi_lib_file.rfind("."); - if(idx == string::npos){ + if(idx == std::string::npos){ idx = bmi_lib_file.length()-1; } std::string alt_bmi_lib_file; diff --git a/include/realizations/catchment/Bmi_Adapter.hpp b/include/realizations/catchment/Bmi_Adapter.hpp index d11678c3e1..ea06a729f8 100644 --- a/include/realizations/catchment/Bmi_Adapter.hpp +++ b/include/realizations/catchment/Bmi_Adapter.hpp @@ -9,8 +9,6 @@ #include "State_Exception.hpp" #include "StreamHandler.hpp" -using namespace std; - namespace models { namespace bmi { /** @@ -21,7 +19,7 @@ namespace models { class Bmi_Adapter : public ::bmi::Bmi { public: - Bmi_Adapter(string model_name, string bmi_init_config, string forcing_file_path, bool allow_exceed_end, + Bmi_Adapter(std::string model_name, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, utils::StreamHandler output) : model_name(std::move(model_name)), bmi_init_config(std::move(bmi_init_config)), @@ -37,7 +35,7 @@ namespace models { if (!utils::FileChecker::file_is_readable(this->bmi_init_config)) { init_exception_msg = "Cannot create and initialize " + this->model_name + " using unreadable file '" + this->bmi_init_config + "'"; - throw runtime_error(init_exception_msg); + throw std::runtime_error(init_exception_msg); } } @@ -93,7 +91,7 @@ namespace models { * @param time_convert_factor A reference to set to the determined conversion factor. */ void acquire_time_conversion_factor(double &time_convert_factor) { - string time_units = GetTimeUnits(); + std::string time_units = GetTimeUnits(); if (time_units == "s" || time_units == "sec" || time_units == "second" || time_units == "seconds") time_convert_factor = 1.0; else if (time_units == "m" || time_units == "min" || time_units == "minute" || @@ -104,7 +102,7 @@ namespace models { else if (time_units == "d" || time_units == "day" || time_units == "days") time_convert_factor = 86400.0; else - throw runtime_error( + throw std::runtime_error( "Invalid model time step units ('" + time_units + "') in " + model_name + "."); } @@ -177,7 +175,7 @@ namespace models { // If there was previous init attempt but w/ failure exception, throw runtime error and include previous // message if (model_initialized && !init_exception_msg.empty()) { - throw runtime_error( + throw std::runtime_error( "Previous " + model_name + " init attempt had exception: \n\t" + init_exception_msg); } // If there was previous init attempt w/ (implicitly) no exception on previous attempt, just return @@ -187,7 +185,7 @@ namespace models { else if (!utils::FileChecker::file_is_readable(bmi_init_config)) { init_exception_msg = "Cannot initialize " + model_name + " using unreadable file '" + bmi_init_config + "'"; - throw runtime_error(init_exception_msg); + throw std::runtime_error(init_exception_msg); } else { try { @@ -198,7 +196,7 @@ namespace models { acquire_time_conversion_factor(bmi_model_time_convert_factor); } // Record the exception message before re-throwing to handle subsequent function calls properly - catch (exception& e) { + catch (std::exception& e) { // Make sure this is set to 'true' after this function call finishes model_initialized = true; throw e; @@ -224,9 +222,9 @@ namespace models { * @throws models::external::State_Exception If `initialize()` in nested model is not successful. * @throws runtime_error If already initialized but using a different file than the passed argument. */ - void Initialize(string config_file) override { + void Initialize(std::string config_file) override { if (config_file != bmi_init_config && model_initialized) { - throw runtime_error( + throw std::runtime_error( "Model init previously attempted; cannot change config from " + bmi_init_config + " to " + config_file); } @@ -243,7 +241,7 @@ namespace models { throw e; } catch (std::exception &e) { - throw runtime_error(e.what()); + throw std::runtime_error(e.what()); } } @@ -270,28 +268,28 @@ namespace models { /** Whether model ``Update`` calls are allowed and handled in some way by the backing model. */ bool allow_model_exceed_end_time = false; /** Path (as a string) to the BMI config file for initializing the backing model (empty if none). */ - string bmi_init_config; + std::string bmi_init_config; /** Pointer to backing BMI model instance. */ - shared_ptr bmi_model = nullptr; + std::shared_ptr bmi_model = nullptr; /** Whether this particular model has a time step size that cannot be changed internally or externally. */ bool bmi_model_has_fixed_time_step = true; /** Conversion factor for converting values for model time in model's unit type to equivalent in seconds. */ double bmi_model_time_convert_factor; /** Pointer to stored time step size value of backing model, if it is fixed and has been retrieved. */ - shared_ptr bmi_model_time_step_size = nullptr; + std::shared_ptr bmi_model_time_step_size = nullptr; /** Whether this particular model implementation directly reads input data from the forcing file. */ bool bmi_model_uses_forcing_file; - string forcing_file_path; + std::string forcing_file_path; /** Message from an exception (if encountered) on the first attempt to initialize the backing model. */ - string init_exception_msg; + std::string init_exception_msg; /** Pointer to collection of input variable names for backing model, used by ``GetInputVarNames()``. */ - shared_ptr> input_var_names; + std::shared_ptr> input_var_names; /** Whether the backing model has been initialized yet, which is always initially ``false``. */ bool model_initialized = false; - string model_name; + std::string model_name; utils::StreamHandler output; /** Pointer to collection of output variable names for backing model, used by ``GetOutputVarNames()``. */ - shared_ptr> output_var_names; + std::shared_ptr> output_var_names; /** * Construct the backing BMI model object, then call its BMI-native ``Initialize()`` function. diff --git a/include/realizations/catchment/Bmi_C_Adapter.hpp b/include/realizations/catchment/Bmi_C_Adapter.hpp index 70d0bff30f..f6f4d70e91 100755 --- a/include/realizations/catchment/Bmi_C_Adapter.hpp +++ b/include/realizations/catchment/Bmi_C_Adapter.hpp @@ -36,7 +36,7 @@ namespace models { * @param registration_func The name for the @see bmi_registration_function. * @param output The output stream handler. */ - explicit Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string forcing_file_path, + explicit Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, const std::string& registration_func, utils::StreamHandler output); @@ -53,7 +53,7 @@ namespace models { * @param registration_func The name for the @see bmi_registration_function. * @param output The output stream handler. */ - Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, + Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output); @@ -81,7 +81,7 @@ namespace models { * @param output The output stream handler. * @param do_initialization Whether initialization should be performed during construction or deferred. */ - Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, + Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output, bool do_initialization); @@ -124,7 +124,7 @@ namespace models { finalizeForCAdapter(); } - string GetComponentName() override; + std::string GetComponentName() override; /** * Get the backing model's current time. diff --git a/include/realizations/catchment/Bmi_Cpp_Adapter.hpp b/include/realizations/catchment/Bmi_Cpp_Adapter.hpp index 24adc6c79a..e805b2e39f 100644 --- a/include/realizations/catchment/Bmi_Cpp_Adapter.hpp +++ b/include/realizations/catchment/Bmi_Cpp_Adapter.hpp @@ -134,7 +134,7 @@ namespace models { finalizeForCppAdapter(); } - string GetComponentName() override; + std::string GetComponentName() override; /** * Get the backing model's current time. diff --git a/include/realizations/catchment/Bmi_Formulation.hpp b/include/realizations/catchment/Bmi_Formulation.hpp index ebe8223d2e..2669930de8 100644 --- a/include/realizations/catchment/Bmi_Formulation.hpp +++ b/include/realizations/catchment/Bmi_Formulation.hpp @@ -41,8 +41,6 @@ class Bmi_Formulation_Test; class Bmi_C_Formulation_Test; class Bmi_C_Pet_IT; -using namespace std; - namespace realization { /** @@ -99,15 +97,15 @@ namespace realization { */ virtual const bool &get_allow_model_exceed_end_time() const = 0; - virtual const vector get_bmi_input_variables() = 0; + virtual const std::vector get_bmi_input_variables() = 0; - const string &get_bmi_main_output_var() const { + const std::string &get_bmi_main_output_var() const { return bmi_main_output_var; } virtual const time_t &get_bmi_model_start_time_forcing_offset_s() = 0; - virtual const vector get_bmi_output_variables() = 0; + virtual const std::vector get_bmi_output_variables() = 0; /** * When possible, translate a variable name for a BMI model to an internally recognized name. @@ -131,7 +129,7 @@ namespace realization { */ virtual const double get_model_end_time() = 0; - virtual const string &get_forcing_file_path() const = 0; + virtual const std::string &get_forcing_file_path() const = 0; /** * Get the name of the specific type of the backing model object. @@ -147,7 +145,7 @@ namespace realization { * * @return The values making up the header line from get_output_header_line() organized as a vector. */ - const vector &get_output_header_fields() const { + const std::vector &get_output_header_fields() const { return output_header_fields; } @@ -159,7 +157,7 @@ namespace realization { * * @return An appropriate header line for this type. */ - string get_output_header_line(string delimiter) override { + std::string get_output_header_line(std::string delimiter) override { return boost::algorithm::join(get_output_header_fields(), delimiter); } @@ -172,15 +170,15 @@ namespace realization { * @return */ // TODO: rename this function to make it more clear it is FORMULATION output contents, not simply BMI variables - const vector &get_output_variable_names() const { + const std::vector &get_output_variable_names() const { return output_variable_names; } - const vector &get_required_parameters() override { + const std::vector &get_required_parameters() override { return REQUIRED_PARAMETERS; } - virtual bool is_bmi_input_variable(const string &var_name) = 0; + virtual bool is_bmi_input_variable(const std::string &var_name) = 0; /** * Test whether backing model has fixed time step size. @@ -189,7 +187,7 @@ namespace realization { */ virtual bool is_bmi_model_time_step_fixed() = 0; - virtual bool is_bmi_output_variable(const string &var_name) = 0; + virtual bool is_bmi_output_variable(const std::string &var_name) = 0; /** * Whether the backing model uses/reads the forcing file directly for getting input data. @@ -226,7 +224,7 @@ namespace realization { return output_precision; } - void set_bmi_main_output_var(const string &main_output_var) { + void set_bmi_main_output_var(const std::string &main_output_var) { bmi_main_output_var = main_output_var; } @@ -239,7 +237,7 @@ namespace realization { model_type_name = std::move(type_name); } - void set_output_header_fields(const vector &output_headers) { + void set_output_header_fields(const std::vector &output_headers) { output_header_fields = output_headers; } @@ -251,7 +249,7 @@ namespace realization { * * @param out_var_names the names of variables in formulation output, in the order they should appear. */ - void set_output_variable_names(const vector &out_var_names) { + void set_output_variable_names(const std::vector &out_var_names) { output_variable_names = out_var_names; } diff --git a/include/realizations/catchment/Bmi_Fortran_Adapter.hpp b/include/realizations/catchment/Bmi_Fortran_Adapter.hpp index 747415c373..626ee76e7b 100644 --- a/include/realizations/catchment/Bmi_Fortran_Adapter.hpp +++ b/include/realizations/catchment/Bmi_Fortran_Adapter.hpp @@ -25,7 +25,7 @@ namespace models { public: - explicit Bmi_Fortran_Adapter(const string &type_name, std::string library_file_path, + explicit Bmi_Fortran_Adapter(const std::string &type_name, std::string library_file_path, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, const std::string ®istration_func, utils::StreamHandler output) @@ -33,7 +33,7 @@ namespace models { has_fixed_time_step, registration_func, output) {} - Bmi_Fortran_Adapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, + Bmi_Fortran_Adapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output) : AbstractCLibBmiAdapter(type_name, @@ -67,7 +67,7 @@ namespace models { model_initialized = true; throw e; } - catch (exception &e) { + catch (std::exception &e) { //This will catch any other exception, but the it will be cast to this base type. //This means it looses it any specific type/message information. So if construct_and_init_backing_model_for_fortran //throws an exception besides runtime_error, catch that type explicitly. @@ -76,7 +76,7 @@ namespace models { } } - string GetComponentName() override; + std::string GetComponentName() override; /** * Get the backing model's current time. diff --git a/include/realizations/catchment/Bmi_Fortran_Formulation.hpp b/include/realizations/catchment/Bmi_Fortran_Formulation.hpp index 3ade34ef83..dacee8eca7 100644 --- a/include/realizations/catchment/Bmi_Fortran_Formulation.hpp +++ b/include/realizations/catchment/Bmi_Fortran_Formulation.hpp @@ -46,7 +46,7 @@ namespace realization { * @param timestep The time step for which data is desired. * @return A delimited string with all the output variable values for the given time step. */ - string get_output_line_for_timestep(int timestep, std::string delimiter) override; + std::string get_output_line_for_timestep(int timestep, std::string delimiter) override; /** * Get the model response for a time step. @@ -102,9 +102,9 @@ namespace realization { return (time_t) (get_bmi_model()->convert_model_time_to_seconds(model_time)); } - double get_var_value_as_double(const string &var_name) override; + double get_var_value_as_double(const std::string &var_name) override; - double get_var_value_as_double(const int &index, const string &var_name) override; + double get_var_value_as_double(const int &index, const std::string &var_name) override; friend class Bmi_Multi_Formulation; diff --git a/include/realizations/catchment/Bmi_Module_Formulation.hpp b/include/realizations/catchment/Bmi_Module_Formulation.hpp index ca0720b66e..4e4108bfa0 100644 --- a/include/realizations/catchment/Bmi_Module_Formulation.hpp +++ b/include/realizations/catchment/Bmi_Module_Formulation.hpp @@ -71,7 +71,7 @@ namespace realization { * @see ForcingProvider */ //const vector &get_available_forcing_outputs() { - const vector &get_available_variable_names() override { + const std::vector &get_available_variable_names() override { if (is_model_initialized() && available_forcings.empty()) { for (const std::string &output_var_name : get_bmi_model()->GetOutputVarNames()) { available_forcings.push_back(output_var_name); @@ -97,7 +97,7 @@ namespace realization { */ time_t get_variable_time_begin(const std::string &variable_name) { // TODO: come back and implement if actually necessary for this type; for now don't use - throw runtime_error("Bmi_Modular_Formulation does not yet implement get_variable_time_begin"); + throw std::runtime_error("Bmi_Modular_Formulation does not yet implement get_variable_time_begin"); } /** @@ -126,16 +126,16 @@ namespace realization { //time_t get_forcing_output_time_end(const std::string &output_name) { time_t get_variable_time_end(const std::string &varibale_name) { // TODO: come back and implement if actually necessary for this type; for now don't use - throw runtime_error("Bmi_Module_Formulation does not yet implement get_variable_time_end"); + throw std::runtime_error("Bmi_Module_Formulation does not yet implement get_variable_time_end"); } long get_data_stop_time() override { // TODO: come back and implement if actually necessary for this type; for now don't use - throw runtime_error("Bmi_Module_Formulation does not yet implement get_data_stop_time"); + throw std::runtime_error("Bmi_Module_Formulation does not yet implement get_data_stop_time"); } long record_duration() override { - throw runtime_error("Bmi_Module_Formulation does not yet implement record_duration"); + throw std::runtime_error("Bmi_Module_Formulation does not yet implement record_duration"); } /** @@ -156,7 +156,7 @@ namespace realization { return get_bmi_model()->GetEndTime(); } - const vector &get_required_parameters() override { + const std::vector &get_required_parameters() override { return REQUIRED_PARAMETERS; } @@ -197,7 +197,7 @@ namespace realization { */ size_t get_ts_index_for_time(const time_t &epoch_time) override { // TODO: come back and implement if actually necessary for this type; for now don't use - throw runtime_error("Bmi_Singular_Formulation does not yet implement get_ts_index_for_time"); + throw std::runtime_error("Bmi_Singular_Formulation does not yet implement get_ts_index_for_time"); } /** @@ -222,7 +222,7 @@ namespace realization { //const std::vector forcing_outputs = get_available_forcing_outputs(); const std::vector forcing_outputs = get_available_variable_names(); if (std::find(forcing_outputs.begin(), forcing_outputs.end(), output_name) == forcing_outputs.end()) { - throw runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); + throw std::runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); } // TODO: do this, or something better, later; right now, just assume anything using this as a provider is // consistent with times @@ -260,7 +260,7 @@ namespace realization { } } //This is unlikely (impossible?) to throw since a pre-check on available names is done above. Assert instead? - throw runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); + throw std::runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); } /** @@ -291,7 +291,7 @@ namespace realization { //const std::vector forcing_outputs = get_available_forcing_outputs(); const std::vector forcing_outputs = get_available_variable_names(); if (std::find(forcing_outputs.begin(), forcing_outputs.end(), output_name) == forcing_outputs.end()) { - throw runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); + throw std::runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); } // TODO: do this, or something better, later; right now, just assume anything using this as a provider is // consistent with times @@ -325,7 +325,7 @@ namespace realization { } //This is unlikely (impossible?) to throw since a pre-check on available names is done above. Assert instead? - throw runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); + throw std::runtime_error(get_formulation_type() + " received invalid output forcing name " + output_name); } bool is_bmi_input_variable(const std::string &var_name) override { @@ -363,11 +363,11 @@ namespace realization { return true; } - const vector get_bmi_input_variables() override { + const std::vector get_bmi_input_variables() override { return get_bmi_model()->GetInputVarNames(); } - const vector get_bmi_output_variables() override { + const std::vector get_bmi_output_variables() override { return get_bmi_model()->GetOutputVarNames(); } @@ -449,7 +449,7 @@ namespace realization { return allow_model_exceed_end_time; } - const string &get_bmi_init_config() const { + const std::string &get_bmi_init_config() const { return bmi_init_config; } @@ -462,7 +462,7 @@ namespace realization { return bmi_model; } - const string &get_forcing_file_path() const override { + const std::string &get_forcing_file_path() const override { return forcing_file_path; } @@ -733,7 +733,7 @@ namespace realization { allow_model_exceed_end_time = allow_exceed_end; } - void set_bmi_init_config(const string &init_config) { + void set_bmi_init_config(const std::string &init_config) { bmi_init_config = init_config; } @@ -763,7 +763,7 @@ namespace realization { bmi_using_forcing_file = uses_forcing_file; } - void set_forcing_file_path(const string &forcing_path) { + void set_forcing_file_path(const std::string &forcing_path) { forcing_file_path = forcing_path; } diff --git a/include/realizations/catchment/Bmi_Multi_Formulation.hpp b/include/realizations/catchment/Bmi_Multi_Formulation.hpp index f8f01653f8..0a30479892 100644 --- a/include/realizations/catchment/Bmi_Multi_Formulation.hpp +++ b/include/realizations/catchment/Bmi_Multi_Formulation.hpp @@ -13,8 +13,6 @@ #define BMI_REALIZATION_CFG_PARAM_REQ__MODULES "modules" #define BMI_REALIZATION_CFG_PARAM_OPT__DEFAULT_OUT_VALS "default_output_values" -using namespace std; - class Bmi_Multi_Formulation_Test; class Bmi_Cpp_Multi_Array_Test; @@ -38,7 +36,7 @@ namespace realization { * @param forcing_config * @param output_stream */ - Bmi_Multi_Formulation(string id, std::shared_ptr forcing_provider, utils::StreamHandler output_stream) + Bmi_Multi_Formulation(std::string id, std::shared_ptr forcing_provider, utils::StreamHandler output_stream) : Bmi_Formulation(std::move(id), forcing_provider, output_stream) { }; virtual ~Bmi_Multi_Formulation() {}; @@ -120,7 +118,7 @@ namespace realization { */ //const vector &get_available_forcing_outputs(); //const vector &get_available_variable_names() override { return get_available_forcing_outputs(); } - const vector &get_available_variable_names() override; + const std::vector &get_available_variable_names() override; /** * Get the input variables of @@ -128,7 +126,7 @@ namespace realization { * * @return The input variables of the first nested BMI model. */ - const vector get_bmi_input_variables() override { + const std::vector get_bmi_input_variables() override { return modules[0]->get_bmi_input_variables(); } @@ -139,7 +137,7 @@ namespace realization { * * @return The output variables of the last nested BMI model. */ - const vector get_bmi_output_variables() override { + const std::vector get_bmi_output_variables() override { return modules.back()->get_bmi_output_variables(); } @@ -163,7 +161,7 @@ namespace realization { * @see get_config_mapped_variable_name(string, bool, bool) * @see get_config_mapped_variable_name(string, shared_ptr, shared_ptr) */ - const string &get_config_mapped_variable_name(const string &model_var_name) override; + const std::string &get_config_mapped_variable_name(const std::string &model_var_name) override; /** * When possible, translate a variable name for the first or last BMI model to an internally recognized name. @@ -181,7 +179,7 @@ namespace realization { * @param check_last Whether an output variable mapping for the last module should sought. * @return Either the translated equivalent variable name, or the provided name if there is not a mapping entry. */ - const string &get_config_mapped_variable_name(const string &model_var_name, bool check_first, bool check_last); + const std::string &get_config_mapped_variable_name(const std::string &model_var_name, bool check_first, bool check_last); /** * When possible, translate the name of an output variable for one BMI model to an input variable for another. @@ -207,11 +205,11 @@ namespace realization { * @param in_module The module needing a translation of ``output_var_name`` to one of its input variable names. * @return Either the translated equivalent variable name, or the provided name if there is not a mapping entry. */ - const string &get_config_mapped_variable_name(const string &output_var_name, + const std::string &get_config_mapped_variable_name(const std::string &output_var_name, const shared_ptr& out_module, const shared_ptr& in_module); - const string &get_forcing_file_path() const override; + const std::string &get_forcing_file_path() const override; /** * Get the inclusive beginning of the period of time over which this instance can provide data for this forcing. @@ -260,7 +258,7 @@ namespace realization { } // If not found ... if (availableData.empty() || availableData.find(var_name) == availableData.end()) { - throw runtime_error(get_formulation_type() + " cannot get output time for unknown \"" + variable_name + "\""); + throw std::runtime_error(get_formulation_type() + " cannot get output time for unknown \"" + variable_name + "\""); } return availableData[var_name]->get_data_start_time(); } @@ -312,7 +310,7 @@ namespace realization { } // If not found ... if (availableData.empty() || availableData.find(var_name) == availableData.end()) { - throw runtime_error(get_formulation_type() + " cannot get output time for unknown \"" + variable_name + "\""); + throw std::runtime_error(get_formulation_type() + " cannot get output time for unknown \"" + variable_name + "\""); } return availableData[var_name]->get_data_stop_time(); } @@ -336,7 +334,7 @@ namespace realization { // If not found ... if (availableData.empty() || availableData.find(var_name) == availableData.end()) { - throw runtime_error(get_formulation_type() + " cannot get output record duration for unknown \"" + var_name + "\""); + throw std::runtime_error(get_formulation_type() + " cannot get output record duration for unknown \"" + var_name + "\""); } return availableData[var_name]->record_duration(); } @@ -372,7 +370,7 @@ namespace realization { return modules[get_index_for_primary_module()]->get_data_start_time(); } - string get_output_line_for_timestep(int timestep, std::string delimiter) override; + std::string get_output_line_for_timestep(int timestep, std::string delimiter) override; double get_response(time_step_t t_index, time_step_t t_delta) override; @@ -391,7 +389,7 @@ namespace realization { */ size_t get_ts_index_for_time(const time_t &epoch_time) override { // TODO: come back and implement if actually necessary for this type; for now don't use - throw runtime_error("Bmi_Multi_Formulation does not yet implement get_ts_index_for_time"); + throw std::runtime_error("Bmi_Multi_Formulation does not yet implement get_ts_index_for_time"); } /** @@ -424,7 +422,7 @@ namespace realization { // If not found ... if (availableData.empty() || availableData.find(output_name) == availableData.end()) { - throw runtime_error(get_formulation_type() + " cannot get output value for unknown " + output_name + SOURCE_LOC); + throw std::runtime_error(get_formulation_type() + " cannot get output value for unknown " + output_name + SOURCE_LOC); } return availableData[output_name]->get_value(CatchmentAggrDataSelector(this->get_catchment_id(),output_name, init_time, duration_s, output_units), m); } @@ -437,12 +435,12 @@ namespace realization { std::string output_units = selector.get_output_units(); if (availableData.empty() || availableData.find(output_name) == availableData.end()) { - throw runtime_error(get_formulation_type() + " cannot get output values for unknown " + output_name + SOURCE_LOC); + throw std::runtime_error(get_formulation_type() + " cannot get output values for unknown " + output_name + SOURCE_LOC); } return availableData[output_name]->get_values(CatchmentAggrDataSelector(this->get_catchment_id(),output_name, init_time, duration_s, output_units), m); } - bool is_bmi_input_variable(const string &var_name) override; + bool is_bmi_input_variable(const std::string &var_name) override; /** * Test whether all backing models have fixed time step size. @@ -451,7 +449,7 @@ namespace realization { */ bool is_bmi_model_time_step_fixed() override; - bool is_bmi_output_variable(const string &var_name) override; + bool is_bmi_output_variable(const std::string &var_name) override; bool is_bmi_using_forcing_file() const override; @@ -480,9 +478,9 @@ namespace realization { * @param name The name of the forcing property for which the current value is desired. * @return Whether the property's value is an aggregate sum. */ - bool is_property_sum_over_time_step(const string &name) override { + bool is_property_sum_over_time_step(const std::string &name) override { if (availableData.empty() || availableData.find(name) == availableData.end()) { - throw runtime_error( + throw std::runtime_error( get_formulation_type() + " cannot get whether unknown property " + name + " is summation"); } return availableData[name]->is_property_sum_over_time_step(name); diff --git a/include/realizations/catchment/Bmi_Py_Adapter.hpp b/include/realizations/catchment/Bmi_Py_Adapter.hpp index f4caa7c1af..1cd91ab5ba 100644 --- a/include/realizations/catchment/Bmi_Py_Adapter.hpp +++ b/include/realizations/catchment/Bmi_Py_Adapter.hpp @@ -22,7 +22,6 @@ class Bmi_Py_Adapter_Test; namespace py = pybind11; using namespace pybind11::literals; // to bring in the `_a` literal for pybind11 keyword args functionality -using namespace std; namespace models { namespace bmi { @@ -35,10 +34,10 @@ namespace models { public: - Bmi_Py_Adapter(const string &type_name, std::string bmi_init_config, const string &bmi_python_type, + Bmi_Py_Adapter(const std::string &type_name, std::string bmi_init_config, const std::string &bmi_python_type, bool allow_exceed_end, bool has_fixed_time_step, utils::StreamHandler output); - Bmi_Py_Adapter(const string &type_name, std::string bmi_init_config, const string &bmi_python_type, + Bmi_Py_Adapter(const std::string &type_name, std::string bmi_init_config, const std::string &bmi_python_type, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, utils::StreamHandler output); @@ -51,7 +50,7 @@ namespace models { * variable, which is assume to be of the necessary size. */ template - void copy_to_array(const string& name, T *dest) + void copy_to_array(const std::string& name, T *dest) { py::array_t backing_array = bmi_model->attr("get_value_ptr")(name); auto uncheck_proxy = backing_array.template unchecked<1>(); @@ -68,7 +67,7 @@ namespace models { * @return A vector containing the values of the desired BMI variable. */ template - std::vector copy_to_vector(const string& name) + std::vector copy_to_vector(const std::string& name) { py::array_t backing_array = bmi_model->attr("get_value_ptr")(name); std::vector dest(backing_array.size()); @@ -83,7 +82,7 @@ namespace models { bmi_model->attr("finalize")(); } - string GetComponentName() override; + std::string GetComponentName() override; double GetCurrentTime() override; @@ -91,11 +90,11 @@ namespace models { int GetInputItemCount() override; - vector GetInputVarNames() override; + std::vector GetInputVarNames() override; int GetOutputItemCount() override; - vector GetOutputVarNames() override; + std::vector GetOutputVarNames() override; int GetGridEdgeCount(const int grid) override { return py::int_(bmi_model->attr("get_grid_edge_count")(grid)); @@ -153,7 +152,7 @@ namespace models { get_and_copy_grid_array("get_grid_spacing", grid, spacing, GetGridRank(grid), "float"); } - string GetGridType(const int grid) override { + std::string GetGridType(const int grid) override { return py::str(bmi_model->attr("get_grid_type")(grid)); } @@ -189,13 +188,13 @@ namespace models { double GetStartTime() override; - string GetTimeUnits() override; + std::string GetTimeUnits() override; double GetTimeStep() override; - string GetVarType(std::string name) override; + std::string GetVarType(std::string name) override; - string GetVarUnits(std::string name) override; + std::string GetVarUnits(std::string name) override; int GetVarGrid(std::string name) override; @@ -203,7 +202,7 @@ namespace models { int GetVarNbytes(std::string name) override; - string GetVarLocation(std::string name) override; + std::string GetVarLocation(std::string name) override; void GetValue(std::string name, void *dest) override; @@ -247,7 +246,7 @@ namespace models { } else if (py_type_name == "float" && item_size == sizeof(long double)) { return "long double"; } else { - throw runtime_error( + throw std::runtime_error( "(Bmi_Py_Adapter) Failed determining analogous C++ type for Python model '" + py_type_name + "' type with size " + std::to_string(item_size) + " bytes."); } @@ -267,7 +266,7 @@ namespace models { } else if (cxx_type_name == "float" || cxx_type_name == "double" || cxx_type_name == "long double") { return "double"; } else { - throw runtime_error("(Bmi_Py_Adapter) Failed determining analogous built-in Python type for C++ '" + + throw std::runtime_error("(Bmi_Py_Adapter) Failed determining analogous built-in Python type for C++ '" + cxx_type_name + "' type"); } } @@ -304,7 +303,7 @@ namespace models { } } - throw runtime_error("(Bmi_Py_Adapter) Failed determining analogous Python dtype for C++ '" + + throw std::runtime_error("(Bmi_Py_Adapter) Failed determining analogous Python dtype for C++ '" + cxx_type_name + "' type with size " + std::to_string(item_size) + " bytes."); } @@ -417,10 +416,10 @@ namespace models { * @throws runtime_error Thrown if @ref GetVarType and @ref GetVarItemsize functions return a combination for * which there is not support for mapping to a native type in the framework. */ - void get_value_at_indices(const string& name, void *dest, int *inds, int count, bool is_all_indices) { - string val_type = GetVarType(name); + void get_value_at_indices(const std::string& name, void *dest, int *inds, int count, bool is_all_indices) { + std::string val_type = GetVarType(name); size_t val_item_size = (size_t)GetVarItemsize(name); - vector in_v = GetInputVarNames(); + std::vector in_v = GetInputVarNames(); // The available types and how they are handled here should match what is in SetValueAtIndices if (val_type == "int" && val_item_size == sizeof(short)) @@ -440,7 +439,7 @@ namespace models { get_via_numpy_array(name, dest, inds, count, val_item_size, is_all_indices); } else - throw runtime_error( + throw std::runtime_error( "(Bmi_Py_Adapter) Failed attempt to GET values of BMI variable '" + name + "' from '" + model_name + "' model: model advertises unsupported combination of type (" + val_type + ") and size (" + std::to_string(val_item_size) + ")."); @@ -468,10 +467,10 @@ namespace models { * @return */ template - py::array_t get_via_numpy_array(const string& name, void *dest, const int *indices, int item_count, + py::array_t get_via_numpy_array(const std::string& name, void *dest, const int *indices, int item_count, size_t item_size, bool is_all_indices) { - string val_type = GetVarType(name); + std::string val_type = GetVarType(name); py::array_t dest_array = np.attr("zeros")(item_count, "dtype"_a = val_type, "order"_a = "C"); if (is_all_indices) { @@ -607,8 +606,8 @@ namespace models { * @param np_type The name of the Python dtype to use for the wrapped Numpy array of update values. */ template - void set_value_at_indices(const string &name, const int *inds, int count, void* cxx_array, - const string &np_type) + void set_value_at_indices(const std::string &name, const int *inds, int count, void* cxx_array, + const std::string &np_type) { py::array_t index_array(py::buffer_info(inds, count)); py::array_t src_array(py::buffer_info((T*)cxx_array, count)); @@ -633,13 +632,13 @@ namespace models { private: /** Fully qualified Python type name for backing module. */ - string bmi_type_py_full_name; + std::string bmi_type_py_full_name; /** A binding to the Python numpy package/module. */ py::object np; /** A pointer to a string with the parent package name of the Python type referenced by ``py_bmi_type_ref``. */ - shared_ptr bmi_type_py_module_name; + std::shared_ptr bmi_type_py_module_name; /** A pointer to a string with the simple name of the Python type referenced by ``py_bmi_type_ref``. */ - shared_ptr bmi_type_py_class_name; + std::shared_ptr bmi_type_py_class_name; /** * Construct the backing BMI model object, then call its BMI-native ``Initialize()`` function. @@ -656,11 +655,11 @@ namespace models { return; try { separate_package_and_simple_name(); - vector moduleComponents = {*bmi_type_py_module_name, *bmi_type_py_class_name}; + std::vector moduleComponents = {*bmi_type_py_module_name, *bmi_type_py_class_name}; // This is a class object for the BMI module Python class py::object bmi_py_class = utils::ngenPy::InterpreterUtil::getPyModule(moduleComponents); // This is the actual backing model object - bmi_model = make_shared(bmi_py_class()); + bmi_model = std::make_shared(bmi_py_class()); bmi_model->attr("initialize")(bmi_init_config); } catch (std::runtime_error& e){ //Catch specific exception types so the type/message don't get erased @@ -668,8 +667,8 @@ namespace models { } // Record the exception message before re-throwing to handle subsequent function calls properly // TODO: handle exceptions in better detail, without losing type information - catch (exception& e) { - init_exception_msg = string(e.what()); + catch (std::exception& e) { + init_exception_msg = std::string(e.what()); // Make sure this is non-empty to be consistent with the above logic if (init_exception_msg.empty()) { init_exception_msg = "Unknown Python model initialization exception."; @@ -707,7 +706,7 @@ namespace models { get_and_copy_grid_array(name, grid, dest, shape[rank-index-1], "float"); return; }else{ - throw runtime_error("GetGrid coordinates not yet implemented for Python BMI adapter for grid type "+grid_type); + throw std::runtime_error("GetGrid coordinates not yet implemented for Python BMI adapter for grid type "+grid_type); } } @@ -722,13 +721,13 @@ namespace models { */ inline void separate_package_and_simple_name() { if (!model_initialized) { - vector split_name; - string delimiter = "."; - string name_string = bmi_type_py_full_name; + std::vector split_name; + std::string delimiter = "."; + std::string name_string = bmi_type_py_full_name; size_t pos = 0; - string token; - while ((pos = name_string.find(delimiter)) != string::npos) { + std::string token; + while ((pos = name_string.find(delimiter)) != std::string::npos) { token = name_string.substr(0, pos); split_name.emplace_back(token); name_string.erase(0, pos + delimiter.length()); @@ -738,7 +737,7 @@ namespace models { + "'; expected format is ."); } // What's left should be the class name - bmi_type_py_class_name = make_shared(name_string); + bmi_type_py_class_name = std::make_shared(name_string); //split_name.pop_back(); // And then the split name should contain the module // TODO: going to need to look at this again in the future; right now, assuming the format @@ -746,7 +745,7 @@ namespace models { // module, but the current logic is going to interpret any complex parent module name as a single // top-level namespace package; e.g., ngen.namespacepackage.model works if ngen.namespacepackage is // a namespace package, but there would be problems with something like ngenpkg.innermodule1.model. - bmi_type_py_module_name = make_shared(boost::algorithm::join(split_name, delimiter)); + bmi_type_py_module_name = std::make_shared(boost::algorithm::join(split_name, delimiter)); } } diff --git a/include/realizations/catchment/Bmi_Py_Formulation.hpp b/include/realizations/catchment/Bmi_Py_Formulation.hpp index 27b31f78fb..c524dca2c8 100644 --- a/include/realizations/catchment/Bmi_Py_Formulation.hpp +++ b/include/realizations/catchment/Bmi_Py_Formulation.hpp @@ -23,9 +23,9 @@ namespace realization { Bmi_Py_Formulation(std::string id, std::shared_ptr forcing, utils::StreamHandler output_stream); - const vector get_bmi_input_variables() override; + const std::vector get_bmi_input_variables() override; - const vector get_bmi_output_variables() override; + const std::vector get_bmi_output_variables() override; std::string get_formulation_type() override; @@ -51,7 +51,7 @@ namespace realization { * @param timestep The time step for which data is desired. * @return A delimited string with all the output variable values for the given time step. */ - string get_output_line_for_timestep(int timestep, std::string delimiter) override; + std::string get_output_line_for_timestep(int timestep, std::string delimiter) override; /** * Get the model response for a time step. @@ -89,19 +89,19 @@ namespace realization { */ double get_response(time_step_t t_index, time_step_t t_delta) override; - bool is_bmi_input_variable(const string &var_name) override; + bool is_bmi_input_variable(const std::string &var_name) override; - bool is_bmi_output_variable(const string &var_name) override; + bool is_bmi_output_variable(const std::string &var_name) override; protected: - shared_ptr construct_model(const geojson::PropertyMap &properties) override; + std::shared_ptr construct_model(const geojson::PropertyMap &properties) override; time_t convert_model_time(const double &model_time) override; - double get_var_value_as_double(const string &var_name) override; + double get_var_value_as_double(const std::string &var_name) override; - double get_var_value_as_double(const int &index, const string &var_name) override; + double get_var_value_as_double(const int &index, const std::string &var_name) override; /** * Test whether backing model has run BMI ``Initialize``. diff --git a/include/realizations/catchment/State_Exception.hpp b/include/realizations/catchment/State_Exception.hpp index 3c2e6471ce..8e33ae8b64 100644 --- a/include/realizations/catchment/State_Exception.hpp +++ b/include/realizations/catchment/State_Exception.hpp @@ -4,8 +4,6 @@ #include #include -using namespace std; - namespace models { namespace external { diff --git a/include/routing/Routing_Params.h b/include/routing/Routing_Params.h index 83e8327f47..c00619b965 100644 --- a/include/routing/Routing_Params.h +++ b/include/routing/Routing_Params.h @@ -1,7 +1,7 @@ -//#ifndef ROUTING_PARAMS -//#define ROUTING_PARAMS +#ifndef NGEN_ROUTING_ROUTING_PARAMS +#define NGEN_ROUTING_ROUTING_PARAMS -using namespace std; +#include /** * @brief routing_params providing configuration information for routing. @@ -28,4 +28,4 @@ struct routing_params }; -//#endif // ROUTING_PARAMS +#endif // NGEN_ROUTING_ROUTING_PARAMS diff --git a/include/simulation_time/Simulation_Time.h b/include/simulation_time/Simulation_Time.h index adebf0bd21..02832f7b4c 100644 --- a/include/simulation_time/Simulation_Time.h +++ b/include/simulation_time/Simulation_Time.h @@ -4,8 +4,6 @@ #include #include -using namespace std; - /** * @brief simulation_time_params providing configuration information for simulation time period. */ diff --git a/include/utilities/ExternalIntegrationException.hpp b/include/utilities/ExternalIntegrationException.hpp index 3a207928dd..f3af5eccbd 100644 --- a/include/utilities/ExternalIntegrationException.hpp +++ b/include/utilities/ExternalIntegrationException.hpp @@ -4,8 +4,6 @@ #include #include -using namespace std; - namespace external { /** * Custom exception indicating a problem when integrating with some external component. @@ -13,11 +11,11 @@ namespace external { * Custom exception for indicating that the framework encountered a problem interoperating with some type of * external component with which it should be integrated. */ - class ExternalIntegrationException : public exception { + class ExternalIntegrationException : public std::exception { public: - ExternalIntegrationException(char const *const message) noexcept : ExternalIntegrationException(string(message)) {} + ExternalIntegrationException(char const *const message) noexcept : ExternalIntegrationException(std::string(message)) {} ExternalIntegrationException(std::string message) noexcept : std::exception(), what_message(std::move(message)) {} diff --git a/include/utilities/parallel_utils.h b/include/utilities/parallel_utils.h index f13b512146..dd92ce489f 100644 --- a/include/utilities/parallel_utils.h +++ b/include/utilities/parallel_utils.h @@ -27,8 +27,6 @@ #include "python/HydrofabricSubsetter.hpp" #endif // ACTIVATE_PYTHON -using namespace std; - namespace parallel { /** @@ -469,8 +467,8 @@ namespace parallel { * @param partitionConfigFile The path to distributed processing hydrofabric partitioning config. * @return Whether subdividing was successful. */ - bool subdivide_hydrofabric(int mpi_rank, int mpi_num_procs, const string &catchmentDataFile, - const string &nexusDataFile, const string &partitionConfigFile) + bool subdivide_hydrofabric(int mpi_rank, int mpi_num_procs, const std::string &catchmentDataFile, + const std::string &nexusDataFile, const std::string &partitionConfigFile) { // Track whether things are good, meaning ok to continue and, at the end, whether successful // Start with a value of true diff --git a/src/NGen.cpp b/src/NGen.cpp index a2cd220b02..0b50127ce0 100644 --- a/src/NGen.cpp +++ b/src/NGen.cpp @@ -79,8 +79,8 @@ int main(int argc, char *argv[]) { //arg 7 is the partition file path //arg 8 is an optional flag that driver should, if not already preprocessed this way, subdivided the hydrofabric - std::vector catchment_subset_ids; - std::vector nexus_subset_ids; + std::vector catchment_subset_ids; + std::vector nexus_subset_ids; if( argc < 2) { // Usage @@ -91,8 +91,8 @@ int main(int argc, char *argv[]) { << "Use \"all\" as explicit argument when no subset is needed." << std::endl; // Build and environment information - cout<getDiscoveredVenvPath()<getDiscoveredVenvPath()<getSystemPath(); - cout<<" System paths:"<(paths)){ - cout<<" "<(r); + auto r_c = std::dynamic_pointer_cast(r); double response = r_c->get_response(output_time_index, 3600.0); std::string output = std::to_string(output_time_index)+","+current_timestamp+","+ r_c->get_output_line_for_timestep(output_time_index)+"\n"; diff --git a/src/realizations/catchment/Bmi_C_Adapter.cpp b/src/realizations/catchment/Bmi_C_Adapter.cpp index 1f050e4649..60f63c5b4f 100755 --- a/src/realizations/catchment/Bmi_C_Adapter.cpp +++ b/src/realizations/catchment/Bmi_C_Adapter.cpp @@ -19,7 +19,7 @@ using namespace models::bmi; * @param registration_func The name for the @see bmi_registration_function. * @param output The output stream handler. */ -Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string forcing_file_path, +Bmi_C_Adapter::Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, const std::string& registration_func, utils::StreamHandler output) : Bmi_C_Adapter(type_name, std::move(library_file_path), "", std::move(forcing_file_path), @@ -38,7 +38,7 @@ Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_p * @param registration_func The name for the @see bmi_registration_function. * @param output The output stream handler. */ -Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, +Bmi_C_Adapter::Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output) : Bmi_C_Adapter(type_name, std::move(library_file_path), std::move(bmi_init_config), @@ -67,7 +67,7 @@ Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_p * @param output The output stream handler. * @param do_initialization Whether initialization should be performed during construction or deferred. */ -Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_path, std::string bmi_init_config, +Bmi_C_Adapter::Bmi_C_Adapter(const std::string &type_name, std::string library_file_path, std::string bmi_init_config, std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, std::string registration_func, utils::StreamHandler output, bool do_initialization) : AbstractCLibBmiAdapter(type_name, library_file_path, std::move(bmi_init_config), std::move(forcing_file_path), allow_exceed_end, @@ -96,7 +96,7 @@ Bmi_C_Adapter::Bmi_C_Adapter(const string &type_name, std::string library_file_p model_initialized = true; throw e; } - catch (exception& e) { + catch (std::exception& e) { // Make sure this is set to 'true' after this function call finishes model_initialized = true; throw e; @@ -135,7 +135,7 @@ Bmi_C_Adapter::Bmi_C_Adapter(Bmi_C_Adapter &adapter) : model_name(adapter.model_ Bmi_C_Adapter::Bmi_C_Adapter(Bmi_C_Adapter &&adapter) noexcept : AbstractCLibBmiAdapter(std::move(adapter)) { } -string Bmi_C_Adapter::GetComponentName() { +std::string Bmi_C_Adapter::GetComponentName() { char component_name[BMI_MAX_COMPONENT_NAME]; if (bmi_model->get_component_name(bmi_model.get(), component_name) != BMI_SUCCESS) { throw std::runtime_error(model_name + " failed to get model component name."); @@ -267,7 +267,7 @@ std::string Bmi_C_Adapter::GetGridType(int grid_id) { char gridtype_c_str[BMI_MAX_TYPE_NAME]; int success = bmi_model->get_grid_type(bmi_model.get(), grid_id, gridtype_c_str); if (success != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid type for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid type for grid ID " + std::to_string(grid_id) + "."); } return std::string(gridtype_c_str); } @@ -276,7 +276,7 @@ int Bmi_C_Adapter::GetGridRank(int grid_id) { int gridrank; int success = bmi_model->get_grid_rank(bmi_model.get(), grid_id, &gridrank); if (success != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid rank for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid rank for grid ID " + std::to_string(grid_id) + "."); } return gridrank; } @@ -285,7 +285,7 @@ int Bmi_C_Adapter::GetGridSize(int grid_id) { int gridsize; int success = bmi_model->get_grid_size(bmi_model.get(), grid_id, &gridsize); if (success != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid size for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid size for grid ID " + std::to_string(grid_id) + "."); } return gridsize; } diff --git a/src/realizations/catchment/Bmi_C_Formulation.cpp b/src/realizations/catchment/Bmi_C_Formulation.cpp index fb0d2328ec..5a5ec2a389 100644 --- a/src/realizations/catchment/Bmi_C_Formulation.cpp +++ b/src/realizations/catchment/Bmi_C_Formulation.cpp @@ -188,7 +188,7 @@ bool Bmi_C_Formulation::is_bmi_input_variable(const std::string &var_name) { return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } -bool Bmi_C_Formulation::is_bmi_output_variable(const string &var_name) { +bool Bmi_C_Formulation::is_bmi_output_variable(const std::string &var_name) { const std::vector names = get_bmi_model()->GetOutputVarNames(); return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } diff --git a/src/realizations/catchment/Bmi_Cpp_Adapter.cpp b/src/realizations/catchment/Bmi_Cpp_Adapter.cpp index f94d11c414..50eead33ce 100644 --- a/src/realizations/catchment/Bmi_Cpp_Adapter.cpp +++ b/src/realizations/catchment/Bmi_Cpp_Adapter.cpp @@ -48,7 +48,7 @@ Bmi_Cpp_Adapter::Bmi_Cpp_Adapter(const std::string& type_name, std::string libra throw e; } catch (...) { - const std::exception_ptr& e = current_exception(); + const std::exception_ptr& e = std::current_exception(); // Make sure this is set to 'true' after this function call finishes //TODO: This construct may not be necessary for the C++ adapter because the shared_ptr has a lambda set up to destroy the model? model_initialized = true; diff --git a/src/realizations/catchment/Bmi_Cpp_Formulation.cpp b/src/realizations/catchment/Bmi_Cpp_Formulation.cpp index b29065afdb..34d5400b6f 100644 --- a/src/realizations/catchment/Bmi_Cpp_Formulation.cpp +++ b/src/realizations/catchment/Bmi_Cpp_Formulation.cpp @@ -187,7 +187,7 @@ bool Bmi_Cpp_Formulation::is_bmi_input_variable(const std::string &var_name) { return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } -bool Bmi_Cpp_Formulation::is_bmi_output_variable(const string &var_name) { +bool Bmi_Cpp_Formulation::is_bmi_output_variable(const std::string &var_name) { const std::vector names = get_bmi_model()->GetOutputVarNames(); return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } diff --git a/src/realizations/catchment/Bmi_Fortran_Adapter.cpp b/src/realizations/catchment/Bmi_Fortran_Adapter.cpp index a2804df671..8c7a8c4e57 100644 --- a/src/realizations/catchment/Bmi_Fortran_Adapter.cpp +++ b/src/realizations/catchment/Bmi_Fortran_Adapter.cpp @@ -3,7 +3,7 @@ using namespace models::bmi; -string Bmi_Fortran_Adapter::GetComponentName() { +std::string Bmi_Fortran_Adapter::GetComponentName() { char component_name[BMI_MAX_COMPONENT_NAME]; if (get_component_name(&bmi_model->handle, component_name) != BMI_SUCCESS) { throw std::runtime_error(model_name + " failed to get model component name."); @@ -126,7 +126,7 @@ int Bmi_Fortran_Adapter::GetVarGrid(std::string name) { std::string Bmi_Fortran_Adapter::GetGridType(int grid_id) { char gridtype_c_str[BMI_MAX_TYPE_NAME]; if (get_grid_type(&bmi_model->handle, &grid_id, gridtype_c_str) != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid type for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid type for grid ID " + std::to_string(grid_id) + "."); } return std::string(gridtype_c_str); } @@ -134,7 +134,7 @@ std::string Bmi_Fortran_Adapter::GetGridType(int grid_id) { int Bmi_Fortran_Adapter::GetGridRank(int grid_id) { int gridrank; if (get_grid_rank(&bmi_model->handle, &grid_id, &gridrank) != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid rank for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid rank for grid ID " + std::to_string(grid_id) + "."); } return gridrank; } @@ -142,7 +142,7 @@ int Bmi_Fortran_Adapter::GetGridRank(int grid_id) { int Bmi_Fortran_Adapter::GetGridSize(int grid_id) { int gridsize; if (get_grid_size(&bmi_model->handle, &grid_id, &gridsize) != BMI_SUCCESS) { - throw std::runtime_error(model_name + " failed to get grid size for grid ID " + to_string(grid_id) + "."); + throw std::runtime_error(model_name + " failed to get grid size for grid ID " + std::to_string(grid_id) + "."); } return gridsize; } diff --git a/src/realizations/catchment/Bmi_Fortran_Formulation.cpp b/src/realizations/catchment/Bmi_Fortran_Formulation.cpp index a9a5a2906c..bd6101824f 100644 --- a/src/realizations/catchment/Bmi_Fortran_Formulation.cpp +++ b/src/realizations/catchment/Bmi_Fortran_Formulation.cpp @@ -45,11 +45,11 @@ std::string Bmi_Fortran_Formulation::get_formulation_type() { return "bmi_fortran"; } -double Bmi_Fortran_Formulation::get_var_value_as_double(const string &var_name) { +double Bmi_Fortran_Formulation::get_var_value_as_double(const std::string &var_name) { return get_var_value_as_double(0, var_name); } -double Bmi_Fortran_Formulation::get_var_value_as_double(const int &index, const string &var_name) { +double Bmi_Fortran_Formulation::get_var_value_as_double(const int &index, const std::string &var_name) { // TODO: consider different way of handling (and how to document) cases like long double or unsigned long long that // don't fit or might convert inappropriately std::string type = get_bmi_model()->GetVarType(var_name); @@ -92,7 +92,7 @@ double Bmi_Fortran_Formulation::get_var_value_as_double(const int &index, const " as double: no logic for converting variable type " + type); } -string Bmi_Fortran_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { +std::string Bmi_Fortran_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { // TODO: something must be added to store values if more than the current time step is wanted // TODO: if such a thing is added, it should probably be configurable to turn it off diff --git a/src/realizations/catchment/Bmi_Multi_Formulation.cpp b/src/realizations/catchment/Bmi_Multi_Formulation.cpp index 4cf3e5bf58..3e15896ce3 100644 --- a/src/realizations/catchment/Bmi_Multi_Formulation.cpp +++ b/src/realizations/catchment/Bmi_Multi_Formulation.cpp @@ -74,12 +74,12 @@ void Bmi_Multi_Formulation::create_multi_formulation(geojson::PropertyMap proper #endif // ACTIVATE_PYTHON } if (inactive_type_requested) { - throw runtime_error( + throw std::runtime_error( get_formulation_type() + " could not initialize sub formulation of type " + type_name + " due to support for this type not being activated."); } if (module == nullptr) { - throw runtime_error(get_formulation_type() + " received unexpected subtype formulation " + type_name); + throw std::runtime_error(get_formulation_type() + " received unexpected subtype formulation " + type_name); } modules[i] = module; @@ -180,7 +180,7 @@ const bool &Bmi_Multi_Formulation::get_allow_model_exceed_end_time() const { * @see ForcingProvider */ //const vector &Bmi_Multi_Formulation::get_available_forcing_outputs() { -const vector &Bmi_Multi_Formulation::get_available_variable_names() { +const std::vector &Bmi_Multi_Formulation::get_available_variable_names() { if (is_model_initialized() && available_forcings.empty()) { for (const nested_module_ptr &module: modules) { for (const std::string &out_var_name: module->get_bmi_output_variables()) { @@ -213,17 +213,17 @@ const time_t &Bmi_Multi_Formulation::get_bmi_model_start_time_forcing_offset_s() * @return Either the translated equivalent variable name, or the provided name if there is not a mapping entry. * @see get_config_mapped_variable_name(string, shared_ptr, shared_ptr) */ -const string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const string &model_var_name) { +const std::string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const std::string &model_var_name) { return get_config_mapped_variable_name(model_var_name, true, true); } -const string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const string &model_var_name, bool check_first, +const std::string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const std::string &model_var_name, bool check_first, bool check_last) { if (check_first) { // If an input var in first module, see if we get back a mapping (i.e., not the same thing), and return if so if (modules[0]->is_bmi_input_variable(model_var_name)) { - const string &mapped_name = modules[0]->get_config_mapped_variable_name(model_var_name); + const std::string &mapped_name = modules[0]->get_config_mapped_variable_name(model_var_name); if (mapped_name != model_var_name) return mapped_name; } @@ -261,19 +261,19 @@ const string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const strin * @param in_module The module needing a translation of ``output_var_name`` to one of its input variable names. * @return Either the translated equivalent variable name, or the provided name if there is not a mapping entry. */ -const string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const string &output_var_name, +const std::string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const std::string &output_var_name, const shared_ptr& out_module, const shared_ptr& in_module) { if (!out_module->is_bmi_output_variable(output_var_name)) return output_var_name; - const string &mapped_output = out_module->get_config_mapped_variable_name(output_var_name); + const std::string &mapped_output = out_module->get_config_mapped_variable_name(output_var_name); if (in_module->is_bmi_input_variable(mapped_output)) return mapped_output; - for (const string &s : in_module->get_bmi_input_variables()) { - const string &mapped_s = in_module->get_config_mapped_variable_name(s); + for (const std::string &s : in_module->get_bmi_input_variables()) { + const std::string &mapped_s = in_module->get_config_mapped_variable_name(s); if (mapped_s == output_var_name || mapped_s == mapped_output) return mapped_s; } @@ -281,11 +281,11 @@ const string &Bmi_Multi_Formulation::get_config_mapped_variable_name(const strin } // TODO: remove from this level - it belongs (perhaps) as part of the ForcingProvider interface, but is general to it -const string &Bmi_Multi_Formulation::get_forcing_file_path() const { +const std::string &Bmi_Multi_Formulation::get_forcing_file_path() const { return modules[0]->get_forcing_file_path(); } -string Bmi_Multi_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { +std::string Bmi_Multi_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { // TODO: have to do some figuring out to make sure this isn't ambiguous (i.e., same output var name from two modules) // TODO: need to verify that output variable names are valid, or else warn and return default @@ -412,11 +412,11 @@ double Bmi_Multi_Formulation::get_response(time_step_t t_index, time_step_t t_de return get_module_var_value_as_double(get_bmi_main_output_var(), modules[index]); } #endif // ACTIVATE_PYTHON - throw runtime_error(get_formulation_type() + " unimplemented type " + module_types[index] + + throw std::runtime_error(get_formulation_type() + " unimplemented type " + module_types[index] + " in get_response for main return value"); } -bool Bmi_Multi_Formulation::is_bmi_input_variable(const string &var_name) { +bool Bmi_Multi_Formulation::is_bmi_input_variable(const std::string &var_name) { return modules[0]->is_bmi_input_variable(var_name); } @@ -425,7 +425,7 @@ bool Bmi_Multi_Formulation::is_bmi_model_time_step_fixed() { [](const std::shared_ptr& m) { return m->is_bmi_model_time_step_fixed(); }); } -bool Bmi_Multi_Formulation::is_bmi_output_variable(const string &var_name) { +bool Bmi_Multi_Formulation::is_bmi_output_variable(const std::string &var_name) { return modules.back()->is_bmi_output_variable(var_name); } diff --git a/src/realizations/catchment/Bmi_Py_Adapter.cpp b/src/realizations/catchment/Bmi_Py_Adapter.cpp index 986c75d934..e43d37bd18 100644 --- a/src/realizations/catchment/Bmi_Py_Adapter.cpp +++ b/src/realizations/catchment/Bmi_Py_Adapter.cpp @@ -6,16 +6,15 @@ #include "Bmi_Py_Adapter.hpp" using namespace models::bmi; -using namespace std; using namespace pybind11::literals; // to bring in the `_a` literal for pybind11 keyword args functionality -Bmi_Py_Adapter::Bmi_Py_Adapter(const string &type_name, string bmi_init_config, const string &bmi_python_type, +Bmi_Py_Adapter::Bmi_Py_Adapter(const std::string &type_name, std::string bmi_init_config, const std::string &bmi_python_type, bool allow_exceed_end, bool has_fixed_time_step, utils::StreamHandler output) : Bmi_Py_Adapter(type_name, std::move(bmi_init_config), bmi_python_type, "", allow_exceed_end, has_fixed_time_step, std::move(output)) {} -Bmi_Py_Adapter::Bmi_Py_Adapter(const string &type_name, string bmi_init_config, const string &bmi_python_type, - string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, +Bmi_Py_Adapter::Bmi_Py_Adapter(const std::string &type_name, std::string bmi_init_config, const std::string &bmi_python_type, + std::string forcing_file_path, bool allow_exceed_end, bool has_fixed_time_step, utils::StreamHandler output) : Bmi_Adapter(type_name + " (BMI Py)", std::move(bmi_init_config), std::move(forcing_file_path), allow_exceed_end, has_fixed_time_step, @@ -34,14 +33,14 @@ Bmi_Py_Adapter::Bmi_Py_Adapter(const string &type_name, string bmi_init_config, throw e; } // Record the exception message before re-throwing to handle subsequent function calls properly - catch (exception &e) { + catch (std::exception &e) { // Make sure this is set to 'true' after this function call finishes model_initialized = true; throw e; } } -string Bmi_Py_Adapter::GetComponentName() { +std::string Bmi_Py_Adapter::GetComponentName() { return py::str(bmi_model->attr("get_component_name")()); } @@ -59,12 +58,12 @@ int Bmi_Py_Adapter::GetInputItemCount() { return py::int_(bmi_model->attr("get_input_item_count")()); } -vector Bmi_Py_Adapter::GetInputVarNames() { - vector in_var_names(GetInputItemCount()); +std::vector Bmi_Py_Adapter::GetInputVarNames() { + std::vector in_var_names(GetInputItemCount()); py::tuple in_var_names_tuple = bmi_model->attr("get_input_var_names")(); int i = 0; for (auto && tuple_item : in_var_names_tuple) { - string var_name = py::str(tuple_item); + std::string var_name = py::str(tuple_item); in_var_names[i++] = var_name; } return in_var_names; @@ -74,12 +73,12 @@ int Bmi_Py_Adapter::GetOutputItemCount() { return py::int_(bmi_model->attr("get_output_item_count")()); } -vector Bmi_Py_Adapter::GetOutputVarNames() { - vector out_var_names(GetOutputItemCount()); +std::vector Bmi_Py_Adapter::GetOutputVarNames() { + std::vector out_var_names(GetOutputItemCount()); py::tuple out_var_names_tuple = bmi_model->attr("get_output_var_names")(); int i = 0; for (auto && tuple_item : out_var_names_tuple) { - string var_name = py::str(tuple_item); + std::string var_name = py::str(tuple_item); out_var_names[i++] = var_name; } return out_var_names; @@ -90,7 +89,7 @@ double Bmi_Py_Adapter::GetStartTime() { return py::float_(bmi_model->attr("get_start_time")()); } -string Bmi_Py_Adapter::GetTimeUnits() { +std::string Bmi_Py_Adapter::GetTimeUnits() { return py::str(bmi_model->attr("get_time_units")()); } @@ -98,15 +97,15 @@ double Bmi_Py_Adapter::GetTimeStep() { return py::float_(bmi_model->attr("get_time_step")()); } -void Bmi_Py_Adapter::GetValue(string name, void *dest) { - string cxx_type; +void Bmi_Py_Adapter::GetValue(std::string name, void *dest) { + std::string cxx_type; try { cxx_type = get_analogous_cxx_type(GetVarType(name), GetVarItemsize(name)); } - catch (runtime_error &e) { - string msg = "Encountered error getting C++ type during call to GetValue: \n"; + catch (std::runtime_error &e) { + std::string msg = "Encountered error getting C++ type during call to GetValue: \n"; msg += e.what(); - throw runtime_error(msg); + throw std::runtime_error(msg); } if (cxx_type == "short") { @@ -124,14 +123,14 @@ void Bmi_Py_Adapter::GetValue(string name, void *dest) { } else if (cxx_type == "long double") { copy_to_array(name, (long double *) dest); } else { - throw runtime_error("Bmi_Py_Adapter can't get value of unsupported type: " + cxx_type); + throw std::runtime_error("Bmi_Py_Adapter can't get value of unsupported type: " + cxx_type); } } void Bmi_Py_Adapter::GetValueAtIndices(std::string name, void *dest, int *inds, int count) { - string val_type = GetVarType(name); - vector in_v = GetInputVarNames(); + std::string val_type = GetVarType(name); + std::vector in_v = GetInputVarNames(); int var_total_items = GetVarNbytes(name) / GetVarItemsize(name); get_value_at_indices(name, dest, inds, count, count == var_total_items); } @@ -149,7 +148,7 @@ int Bmi_Py_Adapter::GetVarItemsize(std::string name) { return py::int_(bmi_model->attr("get_var_itemsize")(name)); } -string Bmi_Py_Adapter::GetVarLocation(std::string name) { +std::string Bmi_Py_Adapter::GetVarLocation(std::string name) { return py::str(bmi_model->attr("get_var_location")(name)); } @@ -157,11 +156,11 @@ int Bmi_Py_Adapter::GetVarNbytes(std::string name) { return py::int_(bmi_model->attr("get_var_nbytes")(name)); } -string Bmi_Py_Adapter::GetVarType(std::string name) { +std::string Bmi_Py_Adapter::GetVarType(std::string name) { return py::str(bmi_model->attr("get_var_type")(name)); } -string Bmi_Py_Adapter::GetVarUnits(std::string name) { +std::string Bmi_Py_Adapter::GetVarUnits(std::string name) { return py::str(bmi_model->attr("get_var_units")(name)); } @@ -191,7 +190,7 @@ std::string Bmi_Py_Adapter::get_bmi_type_simple_name() const { * @see set_value_at_indices */ void Bmi_Py_Adapter::SetValueAtIndices(std::string name, int *inds, int count, void *src) { - string val_type = GetVarType(name); + std::string val_type = GetVarType(name); size_t val_item_size = (size_t)GetVarItemsize(name); // The available types and how they are handled here should match what is in get_value_at_indices @@ -212,7 +211,7 @@ void Bmi_Py_Adapter::SetValueAtIndices(std::string name, int *inds, int count, v } else if (val_type == "float" && val_item_size == sizeof(long double)) { set_value_at_indices(name, inds, count, src, val_type); } else { - throw runtime_error( + throw std::runtime_error( "(Bmi_Py_Adapter) Failed attempt to SET values of BMI variable '" + name + "' from '" + model_name + "' model: model advertises unsupported combination of type (" + val_type + ") and size (" + std::to_string(val_item_size) + ")."); diff --git a/src/realizations/catchment/Bmi_Py_Formulation.cpp b/src/realizations/catchment/Bmi_Py_Formulation.cpp index 9f7d905ac7..e52f2ffa17 100644 --- a/src/realizations/catchment/Bmi_Py_Formulation.cpp +++ b/src/realizations/catchment/Bmi_Py_Formulation.cpp @@ -36,11 +36,11 @@ time_t realization::Bmi_Py_Formulation::convert_model_time(const double &model_t return (time_t) (get_bmi_model()->convert_model_time_to_seconds(model_time)); } -const vector Bmi_Py_Formulation::get_bmi_input_variables() { +const std::vector Bmi_Py_Formulation::get_bmi_input_variables() { return get_bmi_model()->GetInputVarNames(); } -const vector Bmi_Py_Formulation::get_bmi_output_variables() { +const std::vector Bmi_Py_Formulation::get_bmi_output_variables() { return get_bmi_model()->GetOutputVarNames(); } @@ -48,7 +48,7 @@ std::string Bmi_Py_Formulation::get_formulation_type() { return "bmi_py"; } -string Bmi_Py_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { +std::string Bmi_Py_Formulation::get_output_line_for_timestep(int timestep, std::string delimiter) { // TODO: something must be added to store values if more than the current time step is wanted // TODO: if such a thing is added, it should probably be configurable to turn it off if (timestep != (next_time_step_index - 1)) { @@ -113,12 +113,12 @@ double Bmi_Py_Formulation::get_response(time_step_t t_index, time_step_t t_delta return get_var_value_as_double( get_bmi_main_output_var()); } -double Bmi_Py_Formulation::get_var_value_as_double(const string &var_name) { +double Bmi_Py_Formulation::get_var_value_as_double(const std::string &var_name) { return get_var_value_as_double(0, var_name); } -double Bmi_Py_Formulation::get_var_value_as_double(const int &index, const string &var_name) { - string val_type = get_bmi_model()->GetVarType(var_name); +double Bmi_Py_Formulation::get_var_value_as_double(const int &index, const std::string &var_name) { + std::string val_type = get_bmi_model()->GetVarType(var_name); size_t val_item_size = (size_t)get_bmi_model()->GetVarItemsize(var_name); //void *dest; @@ -168,12 +168,12 @@ double Bmi_Py_Formulation::get_var_value_as_double(const int &index, const strin " as double: no logic for converting variable type " + val_type); } -bool Bmi_Py_Formulation::is_bmi_input_variable(const string &var_name) { +bool Bmi_Py_Formulation::is_bmi_input_variable(const std::string &var_name) { const std::vector names = get_bmi_model()->GetInputVarNames(); return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } -bool Bmi_Py_Formulation::is_bmi_output_variable(const string &var_name) { +bool Bmi_Py_Formulation::is_bmi_output_variable(const std::string &var_name) { const std::vector names = get_bmi_model()->GetOutputVarNames(); return std::any_of(names.cbegin(), names.cend(), [var_name](const std::string &s){ return var_name == s; }); } diff --git a/test/forcing/OptionalWrappedDataProvider_Test.cpp b/test/forcing/OptionalWrappedDataProvider_Test.cpp index d56c799234..2c512c5ecf 100644 --- a/test/forcing/OptionalWrappedDataProvider_Test.cpp +++ b/test/forcing/OptionalWrappedDataProvider_Test.cpp @@ -4,7 +4,6 @@ #include "TrivialForcingProvider.hpp" #include "OptionalWrappedDataProvider.hpp" -using namespace std; using namespace data_access; class OptionalWrappedDataProvider_Test : public ::testing::Test { @@ -16,7 +15,7 @@ class OptionalWrappedDataProvider_Test : public ::testing::Test { test::TrivialForcingProvider backingProvider; - vector providers; + std::vector providers; }; diff --git a/test/forcing/TrivialForcingProvider.hpp b/test/forcing/TrivialForcingProvider.hpp index 439ced69a2..ea78fc6954 100644 --- a/test/forcing/TrivialForcingProvider.hpp +++ b/test/forcing/TrivialForcingProvider.hpp @@ -10,7 +10,6 @@ #define OUTPUT_VALUE_1 42.0 #define OUTPUT_DEFAULT_1 36.8 -using namespace std; namespace data_access { namespace test { @@ -53,12 +52,12 @@ namespace data_access { return std::vector(1, get_value(selector, m)); } - bool is_property_sum_over_time_step(const string &name) override { + bool is_property_sum_over_time_step(const std::string &name) override { return true; } private: - vector outputs; + std::vector outputs; }; } } diff --git a/test/realizations/catchments/Bmi_C_Formulation_Test.cpp b/test/realizations/catchments/Bmi_C_Formulation_Test.cpp index 9a23441090..9c5dfd2900 100644 --- a/test/realizations/catchments/Bmi_C_Formulation_Test.cpp +++ b/test/realizations/catchments/Bmi_C_Formulation_Test.cpp @@ -73,7 +73,7 @@ class Bmi_C_Formulation_Test : public ::testing::Test { return formulation.get_model_type_name(); } - static double get_friend_var_value_as_double(Bmi_C_Formulation& formulation, const string& var_name) { + static double get_friend_var_value_as_double(Bmi_C_Formulation& formulation, const std::string& var_name) { return formulation.get_var_value_as_double(var_name); } diff --git a/test/realizations/catchments/Bmi_Cpp_Formulation_Test.cpp b/test/realizations/catchments/Bmi_Cpp_Formulation_Test.cpp index 1e262d70c7..8f8edb4261 100644 --- a/test/realizations/catchments/Bmi_Cpp_Formulation_Test.cpp +++ b/test/realizations/catchments/Bmi_Cpp_Formulation_Test.cpp @@ -71,7 +71,7 @@ class Bmi_Cpp_Formulation_Test : public ::testing::Test { return formulation.get_model_type_name(); } - static double get_friend_var_value_as_double(Bmi_Cpp_Formulation& formulation, const string& var_name) { + static double get_friend_var_value_as_double(Bmi_Cpp_Formulation& formulation, const std::string& var_name) { return formulation.get_var_value_as_double(var_name); } diff --git a/test/realizations/catchments/Bmi_Fortran_Formulation_Test.cpp b/test/realizations/catchments/Bmi_Fortran_Formulation_Test.cpp index 5b6c850e3c..f1de49db13 100644 --- a/test/realizations/catchments/Bmi_Fortran_Formulation_Test.cpp +++ b/test/realizations/catchments/Bmi_Fortran_Formulation_Test.cpp @@ -71,7 +71,7 @@ class Bmi_Fortran_Formulation_Test : public ::testing::Test { return formulation.get_model_type_name(); } - static double get_friend_var_value_as_double(Bmi_Fortran_Formulation& formulation, const string& var_name) { + static double get_friend_var_value_as_double(Bmi_Fortran_Formulation& formulation, const std::string& var_name) { return formulation.get_var_value_as_double(var_name); } diff --git a/test/realizations/catchments/Bmi_Py_Adapter_Test.cpp b/test/realizations/catchments/Bmi_Py_Adapter_Test.cpp index 35a3f402c7..9ce706f710 100644 --- a/test/realizations/catchments/Bmi_Py_Adapter_Test.cpp +++ b/test/realizations/catchments/Bmi_Py_Adapter_Test.cpp @@ -185,7 +185,7 @@ void Bmi_Py_Adapter_Test::TearDownTestSuite() { * @param file_basename The basename of the desired file. * @return The path (as a string) of the first found existing file, or empty string of no existing file was found. */ -std::string Bmi_Py_Adapter_Test::file_search(const vector &parent_dir_options, const string &file_basename) { +std::string Bmi_Py_Adapter_Test::file_search(const std::vector &parent_dir_options, const std::string &file_basename) { // Build vector of paths by building combinations of the path and basename options std::vector path_possibilities(parent_dir_options.size()); for (int i = 0; i < parent_dir_options.size(); ++i) @@ -204,8 +204,8 @@ std::string Bmi_Py_Adapter_Test::file_search(const vector &parent_d * @param file_basename The collection of possible basenames for a sought file. * @return The path (as a string) of the first found existing file, or empty string of no existing file was found. */ -std::string Bmi_Py_Adapter_Test::file_search(const vector &parent_dir_options, - const vector &file_basenames) { +std::string Bmi_Py_Adapter_Test::file_search(const std::vector &parent_dir_options, + const std::vector &file_basenames) { std::string foundPathForBasename; for (const std::string &basename : file_basenames) { foundPathForBasename = file_search(parent_dir_options, basename); diff --git a/test/realizations/catchments/Bmi_Py_Formulation_Test.cpp b/test/realizations/catchments/Bmi_Py_Formulation_Test.cpp index f65d287228..9def1547b1 100644 --- a/test/realizations/catchments/Bmi_Py_Formulation_Test.cpp +++ b/test/realizations/catchments/Bmi_Py_Formulation_Test.cpp @@ -79,7 +79,7 @@ class Bmi_Py_Formulation_Test : public ::testing::Test { return formulation.get_model_type_name(); } - static double get_friend_var_value_as_double(Bmi_Py_Formulation& formulation, const string& var_name) { + static double get_friend_var_value_as_double(Bmi_Py_Formulation& formulation, const std::string& var_name) { return formulation.get_var_value_as_double(var_name); } @@ -303,7 +303,7 @@ void Bmi_Py_Formulation_Test::generate_realization_config(int ex_idx) { * @param file_basename The basename of the desired file. * @return The path (as a string) of the first found existing file, or empty string of no existing file was found. */ -std::string Bmi_Py_Formulation_Test::file_search(const vector &parent_dir_options, const string &file_basename) { +std::string Bmi_Py_Formulation_Test::file_search(const std::vector &parent_dir_options, const std::string &file_basename) { // Build vector of paths by building combinations of the path and basename options std::vector path_possibilities(parent_dir_options.size()); for (int i = 0; i < parent_dir_options.size(); ++i) @@ -322,8 +322,8 @@ std::string Bmi_Py_Formulation_Test::file_search(const vector &pare * @param file_basename The collection of possible basenames for a sought file. * @return The path (as a string) of the first found existing file, or empty string of no existing file was found. */ -std::string Bmi_Py_Formulation_Test::file_search(const vector &parent_dir_options, - const vector &file_basenames) { +std::string Bmi_Py_Formulation_Test::file_search(const std::vector &parent_dir_options, + const std::vector &file_basenames) { std::string foundPathForBasename; for (const std::string &basename : file_basenames) { foundPathForBasename = file_search(parent_dir_options, basename);