From 6794b5b551c262ae18f8fdc46cef0fc3445db8d8 Mon Sep 17 00:00:00 2001 From: Andrew Davison Date: Fri, 25 Aug 2023 16:50:27 +0200 Subject: [PATCH] bugfix: 2D array data should validate --- api/data_models.py | 2 +- api/test/test_api.py | 18 ++++++++++++++++++ 2 files changed, 19 insertions(+), 1 deletion(-) diff --git a/api/data_models.py b/api/data_models.py index 83c3705..707c33e 100644 --- a/api/data_models.py +++ b/api/data_models.py @@ -76,7 +76,7 @@ class AnalogSignal(BaseModel): name: str times_dimensionality: str values_units: str - values: list[float] + values: list[float] | list[list[float]] times: list[float] | None = None @classmethod diff --git a/api/test/test_api.py b/api/test/test_api.py index eabcd51..5ce7617 100644 --- a/api/test/test_api.py +++ b/api/test/test_api.py @@ -102,6 +102,24 @@ def test_get_analogsignal_data(self): assert json_data["values_units"] == value_units[analogsignal_id] + def test_get_analogsignal_data_2(self): + test_file = "https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/raw/master/intan/intan_rhd_test_1.rhd" + params = urllib.parse.urlencode( + {"url": test_file, "segment_id": 0, "analog_signal_id": 0, "type": "IntanIO", "down_sample_factor": 1000} + ) + response = test_client.get(f"/api/analogsignaldata/?{params}") + assert response.status_code == 200 + json_data = response.json() + assert json_data["t_start"] == 0.0 + assert json_data["t_stop"] == 1.0 + assert json_data["sampling_period"] == 3.3333333333333335e-02 + assert json_data["name"] == "RHD2000 amplifier channel" + assert json_data["times_dimensionality"] == "s" + assert json_data["values_units"] == "uV" + assert len(json_data["values"]) == 192 + assert len(json_data["values"][0]) == 30 + assert len(json_data["values"][191]) == 30 + def test_spiketrain(self): test_file = "https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/raw/master/neuroexplorer/File_neuroexplorer_1.nex" params = urllib.parse.urlencode(