-
Notifications
You must be signed in to change notification settings - Fork 0
/
xvfits.c
969 lines (790 loc) · 26.3 KB
/
xvfits.c
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
/*
* xvfits.c - load/save routines for 'fits' format pictures
*
* LoadFITS(fname, pinfo, quick) - loads a FITS file
* WriteFITS(fp,pic,ptype,w,h,r,g,b,numcols,style,raw,cmt,comment)
*/
/*
* Copyright 1992, 1993, 1994 by David Robinson.
*
* Permission to use, copy, modify, and distribute this software and its
* documentation for any purpose and without fee is hereby granted, provided
* that the above copyright notice appear in all copies. This software is
* provided "as is" without express or implied warranty.
*/
#define NEEDSDIR /* for S_IRUSR|S_IWUSR */
#include "xv.h"
#define NCARDS (36)
#define BLOCKSIZE (2880)
/* data types */
typedef enum datatype { T_INT, T_LOG, T_STR, T_NOVAL } DATTYPE;
typedef struct {
FILE *fp; /* file pointer */
int bitpix; /* number of bits per pixel */
int size; /* Size of each pixel, in bytes */
int naxis; /* number of axes */
long int axes[3]; /* size of each axis */
long int ndata; /* number of elements in data */
long int cpos; /* current position in data file */
char *comment; /* malloc'ed comment string, or NULL if none */
} FITS;
/* block workspace of BLOCKSIZE bytes */
static char *fits_block=NULL;
static int splitfits PARM((byte *, char *, int, int, int, char *));
static const char *ftopen3d PARM((FITS *, char *, int *, int *, int *, int *));
static void ftclose PARM((FITS *));
static int ftgbyte PARM((FITS *, byte *, int));
static const char *rdheader PARM((FITS *));
static const char *wrheader PARM((FILE *, int, int, char *));
static const char *rdcard PARM((char *, const char *, DATTYPE, long int *));
static void wrcard PARM((char *, const char *, DATTYPE, int, char *));
static int ftgdata PARM((FITS *, void *, int));
static void ftfixdata PARM((FITS *, void *, int));
static void flip PARM((byte *, int, int));
/*******************************************/
int LoadFITS(fname, pinfo, quick)
char *fname;
PICINFO *pinfo;
int quick;
/*******************************************/
{
/* returns '1' on success */
FITS fs;
int i, nx, ny, nz, bitpix, nrd, ioerror, npixels, bufsize;
byte *image;
const char *error;
char basename[64];
if (fits_block == NULL) {
fits_block = (char *) malloc((size_t) BLOCKSIZE);
if (!fits_block) FatalError("Insufficient memory for FITS block buffer");
}
error = ftopen3d(&fs, fname, &nx, &ny, &nz, &bitpix);
if (error) {
SetISTR(ISTR_WARNING, "%s", error);
return 0;
}
if (quick) nz = 1; /* only load first plane */
npixels = nx * ny;
bufsize = nz * npixels;
if (nx <= 0 || ny <= 0 || npixels/nx != ny || bufsize/nz != npixels) {
SetISTR(ISTR_WARNING, "FITS image dimensions out of range (%dx%dx%d)",
nx, ny, nz);
return 0;
}
image = (byte *) malloc((size_t) bufsize);
if (!image) FatalError("Insufficient memory for image");
/*
* Read in image. For three dimensional images, read it in in one go
* to ensure that we get that same scaling for all planes.
*/
nrd = ftgbyte(&fs, image, bufsize);
ioerror = ferror(fs.fp);
ftclose(&fs);
if (nrd == 0) { /* didn't read any data at all */
if (ioerror)
SetISTR(ISTR_WARNING, "%s", "I/O error reading FITS file");
else
SetISTR(ISTR_WARNING, "%s", "Unexpected EOF reading FITS file");
free(image);
return 0;
}
else if (nrd < bufsize) { /* read partial image */
if (ioerror)
SetISTR(ISTR_WARNING, "%s", "Truncated FITS file due to I/O error");
else
SetISTR(ISTR_WARNING, "%s", "Truncated FITS file");
{ byte *foo;
for (foo=image+nrd; foo<image+bufsize; foo++) *foo=0x80; /* pad with grey */
}
}
if (nz > 1) {
/* how many planes do we actually have? */
nz = (nrd-1)/(npixels) + 1;
/* returns how many sub-files created */
nz = splitfits(image, fs.comment, nx, ny, nz, basename);
image = (byte *)realloc(image, (size_t) npixels); /* toss all but first */
}
/* There seems to be a convention that fits files be displayed using
* a cartesian coordinate system. Thus the first pixel is in the lower left
* corner. Fix this by reflecting in the line y=ny/2.
*/
flip(image, nx, ny);
/* Success! */
pinfo->pic = image;
pinfo->type = PIC8;
pinfo->w = pinfo->normw = nx;
pinfo->h = pinfo->normh = ny;
for (i=0; i < 256; i++) pinfo->r[i] = pinfo->g[i] = pinfo->b[i] = i;
pinfo->frmType = F_FITS;
pinfo->colType = F_GREYSCALE;
sprintf(pinfo->fullInfo, "FITS, bitpix: %d", bitpix);
sprintf(pinfo->shrtInfo, "%dx%d FITS.", nx, ny);
pinfo->comment = fs.comment;
if (nz > 1) {
pinfo->numpages = nz;
strcpy(pinfo->pagebname, basename);
}
return 1;
}
/*******************************************/
int WriteFITS(fp,pic,ptype,w,h,rmap,gmap,bmap,numcols,colorstyle,comment)
FILE *fp;
byte *pic;
int ptype, w,h;
byte *rmap, *gmap, *bmap;
int numcols, colorstyle;
char *comment;
{
int i, j, npixels, nend;
byte *ptr;
const char *error;
byte rgb[256];
if (!fits_block) {
fits_block = (char *) malloc((size_t) BLOCKSIZE);
if (!fits_block) FatalError("Insufficient memory for FITS block buffer");
}
error = wrheader(fp, w, h, comment);
if (error) {
SetISTR(ISTR_WARNING, "%s", error);
return -1;
}
if (ptype == PIC8) {
/* If ptype is PIC8, we need to calculate the greyscale colourmap */
for (i=0; i < numcols; i++) rgb[i] = MONO(rmap[i], gmap[i], bmap[i]);
for (i=h-1; i >= 0; i--) { /* flip line ordering when writing out */
ptr = &pic[i*w];
for (j=0; j < w; j++, ptr++) putc(rgb[*ptr], fp);
}
}
else { /* PIC24 */
for (i=h-1; i >= 0; i--) { /* flip line ordering when writing out */
ptr = &pic[i*w*3];
for (j=0; j < w; j++, ptr += 3) putc(MONO(ptr[0], ptr[1], ptr[2]), fp);
}
}
npixels = w*h;
/* nend is the number of padding characters at the end of the last block */
nend = ((npixels+BLOCKSIZE-1)/BLOCKSIZE)*BLOCKSIZE - npixels;
if (nend) for (i=0; i<nend; i++) putc('\0', fp);
return 0;
}
/************************************/
static int splitfits(image, comment, nx, ny, nz, basename)
byte *image;
char *comment;
int nx, ny, nz;
char *basename;
{
/*
* Given a 3-dimensional FITS image, this splits it up into nz 2-d files.
* It returns the number of files actually stored.
* If only one file could be written, then no split files are created.
* It returns the basename of the split files in bname.
* If there was a problem writing files, then a error message will be set.
*/
int i, npixels=nx * ny, nwrt, tmpfd;
FILE *fp;
const char *error;
char filename[70];
#ifndef VMS
sprintf(basename, "%s/xvpgXXXXXX", tmpdir);
#else
sprintf(basename, "Sys$Disk:[]xvpgXXXXXX");
#endif
#ifdef USE_MKSTEMP
close(mkstemp(basename));
#else
mktemp(basename);
#endif
if (basename[0] == '\0') {
SetISTR(ISTR_WARNING, "%s", "Unable to build temporary filename");
return 1;
}
strcat(basename, ".");
error = NULL;
for (i=0; i < nz && !error; i++) {
sprintf(filename, "%s%d", basename, i+1);
tmpfd = open(filename,O_WRONLY|O_CREAT|O_EXCL,S_IRWUSR);
if (tmpfd < 0) {
error = "Unable to open temporary file";
break;
}
fp = fdopen(tmpfd, "w");
if (!fp) {
error = "Unable to open temporary file";
break;
}
if (wrheader(fp, nx, ny, comment)) {
error = "I/O error writing temporary file";
fflush(fp);
fclose(fp);
unlink(filename);
close(tmpfd);
break;
}
nwrt = fwrite(image+i*npixels, sizeof(byte), (size_t) npixels, fp);
fflush(fp);
fclose(fp);
close(tmpfd);
if (nwrt == 0) { /* failed to write any data */
error = "I/O error writing temporary file";
unlink(filename);
break;
}
else if (nwrt < npixels)
error = "I/O error writing temporary file";
}
/* at this point, i is the number of files created */
if (i == 0) return 1;
if (i == 1) {
sprintf(filename, "%s1", basename);
unlink(filename);
}
if (error) SetISTR(ISTR_WARNING, "%s", error);
return i;
}
/************************************/
static const char *wrheader(fp, nx, ny, comment)
FILE *fp;
int nx, ny;
char *comment;
{
/* Writes a minimalist FITS file header */
char *block = fits_block, *bp;
int i, j, lenhist;
char history[80];
for (i=0, bp=block; i<BLOCKSIZE; i++, bp++) *bp = ' ';
sprintf(history, "Written by XV %s", VERSTR);
lenhist = strlen(history);
i = 0;
wrcard(&block[80*i++], "SIMPLE", T_LOG, 1, NULL); /* write SIMPLE card */
wrcard(&block[80*i++], "BITPIX", T_INT, 8, NULL); /* write BITPIX card */
wrcard(&block[80*i++], "NAXIS", T_INT, 2, NULL); /* write NAXIS card */
wrcard(&block[80*i++], "NAXIS1", T_INT, nx, NULL); /* write NAXIS1 card */
wrcard(&block[80*i++], "NAXIS2", T_INT, ny, NULL); /* write NAXIS2 card */
/* Write HISTORY keyword */
wrcard(&block[80*i++], "HISTORY", T_STR, lenhist, history);
if (comment && *comment != '\0') {
while (*comment == '\n') comment++; /* Skip any blank lines */
while (*comment != '\0') {
for (j=0; j<72; j++)
if (comment[j] == '\0' || comment[j] == '\n') break;
/*
* Check to see if it is an xv history record; if so, then avoid
* duplicating it.
*/
if (j != lenhist || xvbcmp(comment, history, (size_t) j) != 0)
wrcard(&block[80*i++], "COMMENT", T_STR, j, comment);
if (i == NCARDS) { /* Filled up a block */
i = fwrite(block, sizeof(char), (size_t) BLOCKSIZE, fp);
if (i != BLOCKSIZE) return("Error writing FITS file");
for (i=0, bp=block; i<BLOCKSIZE; i++, bp++) *bp = ' ';
i = 0;
}
comment += j;
while (*comment == '\n') comment++; /* Skip any blank lines */
}
}
wrcard(&block[80*i++], "END", T_NOVAL, 0, NULL); /* write END keyword */
i = fwrite(block, sizeof(char), (size_t) BLOCKSIZE, fp);
if (i != BLOCKSIZE) return "Error writing FITS file";
return NULL;
}
/************************************/
static const char *ftopen3d(fs, file, nx, ny, nz, bitpix)
FITS *fs;
char *file;
int *nx, *ny, *nz, *bitpix;
{
/* open a 2 or 3-dimensional fits file.
* Stores the dimensions of the file in nx, ny and nz, and updates the FITS
* structure passed in fs.
* If successful, returns NULL otherwise returns an error message.
* Will return an error message if the primary data unit is not a
* 2 or 3-dimensional array.
*/
FILE *fp;
int naxis, i;
const char *error;
fp = xv_fopen(file, "r");
if (!fp) return "Unable to open FITS file";
fs->fp = fp;
fs->bitpix = 0;
fs->naxis = 0;
fs->cpos = 0;
/* read header */
error = rdheader(fs);
if (error) {
ftclose(fs);
return error;
}
naxis = fs->naxis;
/* get number of data */
fs->ndata = 1;
for (i=0; i<naxis; i++)
fs->ndata = fs->ndata * fs->axes[i];
*nx = fs->axes[0];
*ny = fs->axes[1];
if (naxis == 2) *nz = 1;
else *nz = fs->axes[2];
*bitpix = fs->bitpix;
return NULL;
}
/************************************/
static void ftclose(fs)
FITS *fs;
{
if (fs == NULL) return;
if (fs->fp != NULL) fclose(fs->fp);
}
/************************************/
static const char *rdheader(fs)
FITS *fs;
{
/* reads the fits header, and updates the FITS structure fs.
* Returns NULL on success, or an error message otherwise.
*/
int i, j, res, commlen, commsize;
char name[9];
char *block=fits_block, *p;
const char *error;
long int val; /* the value */
fs->comment = NULL;
commlen = 0;
commsize = 256;
res = fread(block, sizeof(char), (size_t) BLOCKSIZE, fs->fp);
if (res != BLOCKSIZE) return "Error reading FITS file";
i = 0;
/* read SIMPLE key */
error = rdcard(block, "SIMPLE", T_LOG, &val);
if (error) return error;
if (val == 0) return "Not a SIMPLE FITS file";
i++;
/* read BITPIX key */
error = rdcard(&block[80], "BITPIX", T_INT, &val);
if (error) return error;
if (val != 8 && val != 16 && val != 32 && val != 64 && val != -32 &&
val != -64)
return "Bad BITPIX value in FITS file";
j = fs->bitpix = val;
if (j<0) j = -j;
fs->size = j/8;
i++;
/* read NAXIS key */
error = rdcard(&block[2*80], "NAXIS", T_INT, &val);
if (error) return error;
if (val < 0 || val > 999) return "Bad NAXIS value in FITS file";
if (val == 0) return "FITS file does not contain an image";
if (val < 2) return "FITS file has fewer than two dimensions";
fs->naxis = val;
i++;
/* read NAXISnnn keys.
* We allow NAXIS to be > 3 iff the dimensions of the extra axes are 1
*/
for (j=0; j < fs->naxis; j++) {
if (i == NCARDS) {
res = fread(block, sizeof(char), (size_t) BLOCKSIZE, fs->fp);
if (res != BLOCKSIZE) return "Error reading FITS file";
i = 0;
}
sprintf(name, "NAXIS%d", j+1);
error = rdcard(&block[i*80], name, T_INT, &val);
if (error) return error;
if (val < 0) return "Bad NAXISn value in FITS file";
if (val == 0) return "FITS file does not contain an image";
if (j < 3) fs->axes[j] = val;
else if (val != 1) return "FITS file has more than three dimensions";
i++;
}
if (fs->naxis > 3) fs->naxis = 3;
/* do remainder, looking for comment cards */
/* Section 5.2.2.4 of the NOST standard groups COMMENT and HISTORY keywords
* under 'Commentary Keywords'. Many applications write HISTORY records in
* preference to COMMENT records, so we recognise both types here.
*/
for (;;) {
if (i == NCARDS) {
res = fread(block, sizeof(char), (size_t) BLOCKSIZE, fs->fp);
if (res != BLOCKSIZE) return "Unexpected eof in FITS file";
i = 0;
}
p = &block[i*80];
if (strncmp(p, "END ", (size_t) 8) == 0) break;
if (strncmp(p, "HISTORY ", (size_t) 8) == 0 ||
strncmp(p, "COMMENT ", (size_t) 8) == 0) {
p += 8; /* skip keyword */
for (j=71; j >= 0; j--) if (p[j] != ' ') break;
j++; /* make j length of comment */
if (j > 0) { /* skip blank comment cards */
if (fs->comment == NULL) {
fs->comment = (char *) malloc((size_t) commsize); /* initially 256 */
if (fs->comment == NULL)
FatalError("Insufficient memory for comment buffer");
}
if (commlen + j + 2 > commsize) { /* if too small */
char *new;
commsize += commsize; /* double size of array */
new = (char *) malloc((size_t) commsize);
if (new == NULL)
FatalError("Insufficient memory for comment buffer");
if (commlen) xvbcopy(fs->comment, new, (size_t) commlen);
free(fs->comment);
fs->comment = new;
}
xvbcopy(p, &fs->comment[commlen], (size_t) j); /* add string */
commlen += j;
fs->comment[commlen++] = '\n'; /* with trailing cr */
fs->comment[commlen] = '\0';
}
}
i++;
}
return NULL;
}
/************************************/
static void wrcard(card, name, dtype, kvalue, svalue)
char *card;
const char *name;
DATTYPE dtype; /* type of value */
int kvalue;
char *svalue;
{
/* write a header record into the 80 byte buffer card.
* The keyword name is passed in name. The value type is in dtype; this
* can have the following values:
* dtype = T_NOVAL
* no keyword value is written
* dtype = T_LOG
* a logical value, either 'T' or 'F' in column 30 is written
* dtype = T_INT
* an integer is written, right justified in columns 11-30
* dtype = T_STR
* a string 'svalue' of length kvalue is written, in columns 9-80.
*/
int l;
char *sp;
for (l=0, sp=card; l<80; l++,sp++) *sp=' ';
l = strlen(name);
if (l) xvbcopy(name, card, (size_t) l); /* copy name */
if (dtype == T_NOVAL) return;
if (dtype == T_STR) {
l = kvalue;
if (l <= 0) return;
if (l > 72) l = 72;
xvbcopy(svalue, &card[8], (size_t) l);
return;
}
card[8] = '=';
if (dtype == T_LOG)
card[29] = kvalue ? 'T' : 'F';
else { /* T_INT */
sprintf(&card[10], "%20d", kvalue);
card[30] = ' ';
}
}
/************************************/
static const char *rdcard(card, name, dtype, kvalue)
char *card;
const char *name;
DATTYPE dtype; /* type of value */
long int *kvalue;
{
/* Read a header record, from the 80 byte buffer card.
* the keyword name must match 'name'; and parse its value according to
* dtype. This can have the following values:
* dtype = T_LOG
* value is logical, either 'T' or 'F' in column 30.
* dtype = T_INT
* value is an integer, right justified in columns 11-30.
*
* The value is stored in kvalue.
* It returns NULL on success, or an error message otherwise.
*/
int i, ptr;
char namestr[9];
static char error[45];
xvbcopy(card, namestr, (size_t) 8);
for (i=7; i>=0 && namestr[i] == ' '; i--);
namestr[i+1] = '\0';
if (strcmp(namestr, name) != 0) {
sprintf(error, "Keyword %s not found in FITS file", name);
return error;
}
/* get start of value */
ptr = 10;
while (ptr < 80 && card[ptr] == ' ') ptr++;
if (ptr == 80) return "FITS file has missing keyword value"; /* no value */
if (dtype == T_LOG) {
if (ptr != 29 || (card[29] != 'T' && card[29] != 'F'))
return "Keyword has bad logical value in FITS file";
*kvalue = (card[29] == 'T');
}
else { /* an integer */
int j;
long int ival;
char num[21];
if (ptr > 29) return "Keyword has bad integer value in FITS file";
xvbcopy(&card[ptr], num, (size_t) (30-ptr));
num[30-ptr] = '\0';
j = sscanf(num, "%ld", &ival);
if (j != 1) return "Keyword has bad integer value in FITS file";
*kvalue = ival;
}
return NULL;
}
/************************************/
static int ftgdata(fs, buffer, nelem)
FITS *fs;
void *buffer;
int nelem;
{
/* reads nelem values into the buffer.
* returns NULL for success or an error message.
* Copes with the fact that the last 2880 byte record of the FITS file
* may be truncated, and should be padded out with zeros.
* bitpix type of data
* 8 byte
* 16 short int (NOT 2-byte integer)
* 32 int (NOT 4-byte integer)
* -32 float
* -64 double
*
* Returns the number of elements actually read.
*/
int res;
if (nelem == 0) return 0;
res = fread(buffer, (size_t) fs->size, (size_t) nelem, fs->fp);
/* if failed to read all the data because at end of file */
if (res != nelem && feof(fs->fp)) {
/* nblock is the number of elements in a record.
size is always a factor of BLOCKSIZE */
int loffs, nblock=BLOCKSIZE/fs->size;
/*
* the last record might be short; check this.
* loffs is the offset of the start of the last record from the current
* position.
*/
loffs = ((fs->ndata + nblock - 1) / nblock - 1) * nblock - fs->cpos;
/* if we read to the end of the penultimate record */
if (res >= loffs) {
/* pad with zeros */
xvbzero((char *)buffer+res*fs->size, (size_t) ((nelem-res)*fs->size));
res = nelem;
}
}
fs->cpos += res;
if (res) ftfixdata(fs, buffer, res);
return res;
}
/************************************/
static void ftfixdata(fs, buffer, nelem)
FITS *fs;
void *buffer;
int nelem;
{
/* convert the raw data, as stored in the FITS file, to the format
* appropiate for the data representation of the host computer.
* Assumes that
* short int = 2 or more byte integer
* int = 4 or more byte integer
* float = 4 byte floating point, not necessarily IEEE.
* double = 8 byte floating point.
* This can exit for lack of memory on the first call with float or
* double data.
*/
int i, n=nelem;
byte *ptr=buffer;
/*
* conversions. Although the data may be signed, reverse using unsigned
* variables.
* Because the native int types may be larger than the types in the file,
* we start from the end and work backwards to avoid overwriting data
* prematurely.
*/
/* convert from big-endian two-byte signed integer to native form */
if (fs->bitpix == 16) {
unsigned short int *iptr=(unsigned short int *)ptr;
iptr += n-1; /* last short int */
ptr += (n-1)*2; /* last pair of bytes */
for (i=0; i < n; i++, ptr-=2, iptr--)
*iptr = (((int)*ptr) << 8) | (int)(ptr[1]);
}
/* convert from big-endian four-byte signed integer to native form */
else if (fs->bitpix == 32) {
unsigned int *iptr = (unsigned int *)ptr;
iptr += n-1; /* last integer */
ptr += (n-1)*4; /* last 4 bytes */
for (i=0; i < n; i++, ptr-=4, iptr--)
*iptr = ((unsigned int)ptr[0] << 24) |
((unsigned int)ptr[1] << 16) |
((unsigned int)ptr[2] << 8) |
((unsigned int)ptr[3]);
}
/* convert from IEE 754 single precision to native form */
else if (fs->bitpix == -32) {
int j, k, expo;
static float *exps=NULL;
if (exps == NULL) {
exps = (float *)malloc(256 * sizeof(float));
if (exps == NULL) FatalError("Insufficient memory for exps store");
exps[150] = 1.;
for (i=151; i < 256; i++) exps[i] = 2.*exps[i-1];
for (i=149; i >= 0; i--) exps[i] = 0.5*exps[i+1];
}
for (i=0; i < n; i++, ptr+=4) {
k = (int)*ptr;
j = ((int)ptr[1] << 16) | ((int)ptr[2] << 8) | (int)ptr[3];
expo = ((k & 127) << 1) | (j >> 23);
if ((expo | j) == 0) *(float *)ptr = 0.;
else *(float *)ptr = exps[expo]*(float)(j | 0x800000);
if (k & 128) *(float *)ptr = - *(float *)ptr;
}
}
/* convert from IEE 754 double precision to native form */
else if (fs->bitpix == -64) {
int expo, k, l;
unsigned int j;
static double *exps=NULL;
if (exps == NULL) {
exps = (double *)malloc(2048 * sizeof(double));
if (exps == NULL) FatalError("Insufficient memory for exps store");
exps[1075] = 1.;
for (i=1076; i < 2048; i++) exps[i] = 2.*exps[i-1];
for (i=1074; i >= 0; i--) exps[i] = 0.5*exps[i+1];
}
for (i=0; i < n; i++, ptr+=8) {
k = (int)*ptr;
j = ((unsigned int)ptr[1] << 24) | ((unsigned int)ptr[2] << 16) |
((unsigned int)ptr[3] << 8) | (unsigned int)ptr[4];
l = ((int)ptr[5] << 16) | ((int)ptr[6] << 8) | (int)ptr[7];
expo = ((k & 127) << 4) | (j >> 28);
if ((expo | j | l) == 0) *(double *)ptr = 0.;
else *(double *)ptr = exps[expo] * (16777216. *
(double)((j&0x0FFFFFFF)|0x10000000) + (double)l);
if (k & 128) *(double *)ptr = - *(double *)ptr;
}
}
}
#define maxmin(x, max, min) {\
maxmin_t=(x); if(maxmin_t > max) max=maxmin_t; \
if (maxmin_t<min) min=maxmin_t;}
/************************************/
static int ftgbyte(fs, cbuff, nelem)
FITS *fs;
byte *cbuff;
int nelem;
{
/* Reads a byte image from the FITS file fs. The image contains nelem pixels.
* If bitpix = 8, then the image is loaded as stored in the file.
* Otherwise, it is rescaled so that the minimum value is stored as 0, and
* the maximum is stored as 255.
* Returns the number of pixels read.
*/
void *voidbuff;
int i, n, nrd, bufsize, overflow=0;
/* if the data is byte, then read it directly */
if (fs->bitpix == 8)
return ftgdata(fs, cbuff, nelem);
/* allocate a buffer to store the image */
if (fs->bitpix == 16) {
bufsize = nelem * sizeof(short int);
if (bufsize/nelem != (int)sizeof(short int))
overflow = 1;
} else if (fs->bitpix == 32) {
bufsize = nelem * sizeof(int);
if (bufsize/nelem != (int)sizeof(short int))
overflow = 1;
} else {
bufsize = nelem * fs->size; /* float, double */
if (bufsize/nelem != fs->size)
overflow = 1;
}
if (overflow) {
SetISTR(ISTR_WARNING, "FITS image dimensions out of range");
return 0;
}
voidbuff = (void *)malloc((size_t) bufsize);
if (voidbuff == NULL) {
char emess[60];
sprintf(emess, "Insufficient memory for raw image of %d bytes",
nelem*fs->size);
FatalError(emess);
}
nrd = ftgdata(fs, voidbuff, nelem);
if (nrd == 0) return 0;
n = nrd;
/* convert short int to byte */
if (fs->bitpix == 16) {
short int *buffer=voidbuff;
int max, min, maxmin_t;
float scale;
min = max = buffer[0];
for (i=1; i < n; i++, buffer++) maxmin(*buffer, max, min);
scale = (max == min) ? 0. : 255./(float)(max-min);
/* rescale and convert */
for (i=0, buffer=voidbuff; i < n; i++)
cbuff[i] = (byte)(scale*(float)((int)buffer[i]-min));
/* convert long int to byte */
}
else if (fs->bitpix == 32) {
int *buffer=voidbuff;
int max, min, maxmin_t;
float scale, fmin;
min = max = buffer[0];
for (i=1; i < n; i++, buffer++) maxmin(*buffer, max, min);
scale = (max == min) ? 1. : 255./((double)max-(double)min);
fmin = (float)min;
/* rescale and convert */
if (scale < 255./2.1e9) /* is max-min too big for an int ? */
for (i=0, buffer=voidbuff; i < n; i++)
cbuff[i] = (byte)(scale*((float)buffer[i]-fmin));
else /* use integer subtraction */
for (i=0, buffer=voidbuff; i < n; i++)
cbuff[i] = (byte)(scale*(float)(buffer[i]-min));
}
/* convert float to byte */
else if (fs->bitpix == -32) {
float *buffer=voidbuff;
float max, min, maxmin_t, scale;
min = max = buffer[0];
for (i=1; i < n; i++, buffer++) maxmin(*buffer, max, min);
scale = (max == min) ? 0. : 255./(max-min);
/* rescale and convert */
for (i=0, buffer=voidbuff; i < n; i++)
cbuff[i] = (byte)(scale*(buffer[i]-min));
}
/* convert double to byte */
else if (fs->bitpix == -64) {
double *buffer=voidbuff;
double max, min, maxmin_t, scale;
min = max = buffer[0];
for (i=1; i < n; i++, buffer++) maxmin(*buffer, max, min);
scale = (max == min) ? 0. : 255./(max-min);
/* rescale and convert */
for (i=0, buffer=voidbuff; i < n; i++)
cbuff[i] = (byte)(scale*(buffer[i]-min));
}
free(voidbuff);
return n;
}
#undef maxmin
/************************************/
static void flip(buffer, nx, ny)
byte *buffer;
int nx;
int ny;
{
/* reverse order of lines in image */
int i;
int j, v;
byte *buff1, *buff2;
for (i=0; i < ny/2; i++) {
buff1 = &buffer[i*nx];
buff2 = &buffer[(ny-1-i)*nx];
for (j=0; j < nx; j++) {
v = *buff1;
*(buff1++) = *buff2;
*(buff2++) = v;
}
}
}