diff --git a/DESCRIPTION b/DESCRIPTION index 07785f00..78ec804f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: PhenotypeLibrary Type: Package Title: The OHDSI Phenotype Library -Version: 3.28.0 +Version: 3.28.1 Date: 2023-10-09 Author: Gowtham Rao [aut, cre] Maintainer: Gowtham Rao diff --git a/NEWS.md b/NEWS.md index 3229181b..2bfd9571 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +PhenotypeLibrary 3.28.1 +====================== +Bug fix with getPhenotypeLog() + PhenotypeLibrary 3.28.0 ====================== Accepted Cohorts: No cohorts were accepted in this release. diff --git a/R/Phenotypes.R b/R/Phenotypes.R index 84c80a55..c7bcef1d 100644 --- a/R/Phenotypes.R +++ b/R/Phenotypes.R @@ -51,7 +51,7 @@ getPlCohortDefinitionSet <- function(cohortIds) { checkmate::assertIntegerish(cohortIds, min.len = 1, add = errorMessages) checkmate::reportAssertions(collection = errorMessages) - cohorts <- getPhenotypeLog() |> + cohorts <- getPhenotypeLog(showHidden = TRUE) |> dplyr::filter(.data$cohortId %in% cohortIds) |> dplyr::select( "cohortId", diff --git a/docs/404.html b/docs/404.html index bdb3f359..51859c7e 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/CohortDefinitionSubmissionRequirements.html b/docs/articles/CohortDefinitionSubmissionRequirements.html index 38818926..98934709 100644 --- a/docs/articles/CohortDefinitionSubmissionRequirements.html +++ b/docs/articles/CohortDefinitionSubmissionRequirements.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html index 7a06e301..c1713455 100644 --- a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html +++ b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 @@ -150,8 +150,8 @@

2023-10-09

window.URL.revokeObjectURL(url); }); }); -
- +
+ @@ -132,8 +132,8 @@

2023-10-09

-
- +
+ diff --git a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html index 91414b3f..d57a62b5 100644 --- a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html +++ b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/GuidanceOnLiteratureReview.html b/docs/articles/GuidanceOnLiteratureReview.html index b22cf9fb..4465c371 100644 --- a/docs/articles/GuidanceOnLiteratureReview.html +++ b/docs/articles/GuidanceOnLiteratureReview.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/GuidanceOnPerformingPeerReview.html b/docs/articles/GuidanceOnPerformingPeerReview.html index 4a9a514c..728dfc6a 100644 --- a/docs/articles/GuidanceOnPerformingPeerReview.html +++ b/docs/articles/GuidanceOnPerformingPeerReview.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/GuidanceOnWritingAnEvaluationReport.html b/docs/articles/GuidanceOnWritingAnEvaluationReport.html index c45ddc32..96404742 100644 --- a/docs/articles/GuidanceOnWritingAnEvaluationReport.html +++ b/docs/articles/GuidanceOnWritingAnEvaluationReport.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html index 2aa49c83..9dd4dd84 100644 --- a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html +++ b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 diff --git a/docs/articles/HowToUsePhenotypeLibraryRPackage.html b/docs/articles/HowToUsePhenotypeLibraryRPackage.html index e453a20c..6e39a1a4 100644 --- a/docs/articles/HowToUsePhenotypeLibraryRPackage.html +++ b/docs/articles/HowToUsePhenotypeLibraryRPackage.html @@ -33,7 +33,7 @@ PhenotypeLibrary - 3.28.0 + 3.28.1 @@ -179,10 +179,11 @@

RetrievalcohortDefinitionSet <- PhenotypeLibrary::getPlCohortDefinitionSet(cohortIds = c(1, 2, 3)) cohortDefinitionSet -
#> # A tibble: 1 x 4
-#>   cohortId cohortName      json                                            sql  
-#>      <dbl> <chr>           <chr>                                           <chr>
-#> 1        3 Cough or Sputum "{\n\t\"cdmVersionRange\" : \">=5.0.0\",\n\t\"~ "CRE~
+
#> # A tibble: 2 x 4
+#>   cohortId cohortName                                   json               sql  
+#>      <dbl> <chr>                                        <chr>              <chr>
+#> 1        2 COVID-19 diagnosis or SARS-CoV-2 test (1pos) "{\n\t\"cdmVersio~ "CRE~
+#> 2        3 Cough or Sputum                              "{\n\t\"cdmVersio~ "CRE~