diff --git a/README.md b/README.md index 00ce5eb..e9ec87c 100644 --- a/README.md +++ b/README.md @@ -53,6 +53,11 @@ If you only want to get quality control statistics, run: python after.py --qc_only ``` +# Gzip output +* If the input FastQ files are gzipped, then the output will be also gzipped.   +* If the input FastQ files are not gzipped, you can enable `--gzip` or `-z` option to force gzip compression. +* Use `--compression` to change the compression level (0~9), default is 2. The better the compression, the lower the speed. + # Full options: ***Common options*** ```shell