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What is the difference between defq and defastq software #4

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chengbc20 opened this issue Mar 23, 2021 · 7 comments
Open

What is the difference between defq and defastq software #4

chengbc20 opened this issue Mar 23, 2021 · 7 comments

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@chengbc20
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I downloaded the defastq software through this link:
http://opengene.org/defastq/defastq
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What is the difference between defq and defastq software?

@sfchen
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sfchen commented Mar 23, 2021

The source code of defastq will be open after some review process, and then defq project will be terminated since defastq is better.

@chengbc20
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The source code of defastq will be open after some review process, and then defq project will be terminated since defastq is better.

I encountered an error when using "defastq", and I could not finish data demultiplexing. Can you provide documentation for this software, I can’t find any usage information on the Internet

Because reads are PE150. There are two 8bp bacodes at the end of reads2, I use the following command, and can't demultiplex the Fastq files.
“./defastq -1 read_1.fq.gz -2 read_2.fq.gz -i barcode.tsv -o result -b read2 -s 151 -l 8 -b read2 -s 159 -l 8 -a 2 -r”

@chengbc20
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The source code of defastq will be open after some review process, and then defq project will be terminated since defastq is better.

I have a new question, when will defastq be released? Look forward to your reply

@sfchen
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sfchen commented Aug 19, 2021

How about tomorrow?

@chengbc20
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How about tomorrow?

Is it really possible? I am looking forward to using this software

If there is any news about this software, I would also like to know

@sfchen
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sfchen commented Aug 20, 2021

Hi, the code of defastq is online: https://github.com/OpenGene/defastq

@chengbc20
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Hi, the code of defastq is online: https://github.com/OpenGene/defastq

Many thanks

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