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Burst variance analysis plotting error #47

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shenk0128 opened this issue Apr 24, 2024 · 4 comments
Open

Burst variance analysis plotting error #47

shenk0128 opened this issue Apr 24, 2024 · 4 comments

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@shenk0128
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When I use the Jupyter Notebook to do burst variance analysis, a plotting error came up as below.

image

@harripd
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harripd commented Apr 25, 2024

Before I can provide a solution, I'll need some more details.
I can say that the notebook works on my system.
The most likely explanation is that you are using different (most likely older) versions of one or more packages.
My best guess is that you are using an older version of seaborn.

Can you please tell me what version of seaborn you are using.

In your terminal:

conda list seaborn

Or in the notebook

print(sns.__version__)

I am using seaborn 0.13.2

The rest of your versions may be important, get this with (in the terminal)

conda list

I don't know which solution is better for you, to update your version or change the line in the notebook.

@shenk0128
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Ahh the seaborn was version 0.10.1, and I updated it to 0.11.2, and it works now. Thank you very much.

@shenk0128
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After I updated seaborn, alex_jointplot function seems not working, as in a previous build, there is a warning:

C:\ProgramData\anaconda3\envs\FRETBurstsEnv221014\lib\site-packages\seaborn\axisgrid.py:1840: UserWarning: JointGrid annotation is deprecated and will be removed in a future release.

@harripd
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harripd commented May 1, 2024

Ah, sorry for the late reply, it looks like you must have used conda install for fretbursts.
uninstall fretbursts and then reinstall using pip

pip install fretbursts

The project changed hands and I haven't been able to figure out how to get the upload to conda-forge to work.

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