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weekly_status_report.md

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Weekly status report for INCF

week of July 12

What have you been doing this week?

  • finished testing and submitting processing tab PR
  • tested out .mat and .nwb patchmaster conversion code
  • got tiny-neuron-ephys data into plottable format

What are you planning to do next week?

  • work on converting missing info from .dat files to nwb files
  • add metadata information to nwb files

Is anything blocking your progress?

  • Not currently

week of July 5

What have you been doing this week?

  • got processing tab working
  • looked into single units plotting, table display
  • looked into roi response series plotting
  • finished going through test datasets and taking notes

What are you planning to do next week?

  • get tiny-neuron-ephys data into plottable format
  • test and submit processing module PR

Is anything blocking your progress?

  • Ran into some data importing challenges with the single units/roi plotting, left for now and will try to debug later

week of June 28

What have you been doing this week?

  • got markers+lines on lick event plots partially working
  • got 2D/1D spatial series plotting partially working
  • added spaces so display of units text worked

What are you planning to do next week?

  • look into how the plotting things I've learned about could be applied to other data types
  • continue seeing how far I can push with different datasets
    • keep track of what can and can't be done currently
    • potentially look into images, single unit rasters

Is anything blocking your progress?

  • Not currently

week of June 21

What have you been doing this week?

  • worked through debugging some of the smaller fixes
    • add datetime info to metadata and display in general tab
    • display of units/electrodes column in general tab
  • looked into plotting time series with more than one dimension

What are you planning to do next week?

  • look into plotting event times with markers + lines
  • look into plotting 2D spatial series
  • make some edits to what I worked on this week and test on data
    • add space so display of units text wraps in general tab
    • display only date/hour of datetime info in general tab

Is anything blocking your progress?

  • plotting rois seems potentially complicated, tabled for now and moved on to other items

week of June 14

What have you been doing this week?

  • submitted experimenter issue and tried fixing
    • got more familiar with codebase, how to debug
    • added potential fix and made pull request
  • got a workspace and repository with v2devOSB working
  • continued going through example datasets and made doc of notes

What are you planning to do next week?

  • look into and try debugging some of the potentially smaller fixes
    • plotting of time series with more than one dimension
    • display of times in general tab
    • display of units/electrodes columns in general tab
  • continue going through example datasets and adding to doc

Is anything blocking your progress?

  • Not currently

week of June 7

What have you been doing this week?

  • installed NWBE locally and got the developer environment working
  • downloaded datasets from DANDI to use as test examples
  • made list of potential features/bugs based on test datasets

What are you planning to do next week?

  • submit experimenter issue and try fixing it
  • continue going through example datasets
    • compare plots and data with those displayed by nwbwidgets
    • submit issues as needed
  • test out making a workspace and repository with v2devOSB if possible

Is anything blocking your progress?

  • Not currently

template questions

What have you been doing this week?

What are you planning to do next week?

Is anything blocking your progress?