diff --git a/docker/Dockerfile b/docker/Dockerfile index 5c4f73413..394ff4d86 100644 --- a/docker/Dockerfile +++ b/docker/Dockerfile @@ -6,7 +6,7 @@ FROM ubuntu:16.04 LABEL base.image="biocontainers:latest" LABEL version="1" LABEL software="GRIDSS" -LABEL software.version="1.8.1" +LABEL software.version="1.9.0" LABEL about.summary="Genomic Rearrangement IDentification Software Suite" LABEL about.home="https://github.com/PapenfussLab/gridss" LABEL about.tags="Genomics" @@ -35,6 +35,6 @@ RUN chmod 777 /data USER gridss RUN mkdir /data/gridss WORKDIR /data/gridss -RUN wget https://github.com/PapenfussLab/gridss/releases/download/v1.8.1/gridss-1.8.1-gridss-jar-with-dependencies.jar +RUN wget https://github.com/PapenfussLab/gridss/releases/download/v1.9.0/gridss-1.9.0-gridss-jar-with-dependencies.jar -ENTRYPOINT ["java", "-ea", "-Xmx16g", "-Dsamjdk.create_index=true", "-Dsamjdk.use_async_io_read_samtools=true", "-Dsamjdk.use_async_io_write_samtools=true", "-Dsamjdk.use_async_io_write_tribble=true", "-Dgridss.gridss.output_to_temp_file=true", "-cp", "/data/gridss/gridss-1.8.1-gridss-jar-with-dependencies.jar", "gridss.CallVariants", "WORKER_THREADS=4"] +ENTRYPOINT ["java", "-ea", "-Xmx16g", "-Dsamjdk.create_index=true", "-Dsamjdk.use_async_io_read_samtools=true", "-Dsamjdk.use_async_io_write_samtools=true", "-Dsamjdk.use_async_io_write_tribble=true", "-Dgridss.gridss.output_to_temp_file=true", "-cp", "/data/gridss/gridss-1.9.0-gridss-jar-with-dependencies.jar", "gridss.CallVariants", "WORKER_THREADS=4"]