diff --git a/README.md b/README.md index 03def33..68b4620 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # VIPERA

- +

[![PGO badge](https://img.shields.io/badge/PathoGenOmics-Lab-yellow.svg)](https://pathogenomics.github.io/) @@ -10,7 +10,7 @@ ![Install workflow](https://github.com/PathoGenOmics-Lab/Case-study-SARS-CoV-2/actions/workflows/install.yml/badge.svg) ![Test workflow](https://github.com/PathoGenOmics-Lab/Case-study-SARS-CoV-2/actions/workflows/test.yml/badge.svg) -A pipeline for SARS-CoV-2 Virus Intra-Patient Evolution Research and Analysis. +A pipeline for SARS-CoV-2 Virus Intra-Patient Evolution Reporting and Analysis. ## Instructions @@ -114,7 +114,6 @@ snakemake --forceall --dag | dot -Tpng > .dag.png ![Snakemake rule graph](.dag.png) - ## Methodology ### Pairwise distances between samples @@ -136,6 +135,7 @@ $j = 1... J :$ Index over alleles. $M_{ij}$ : Frequency of allel $j$ in position $i$ for sequence $M$. ## Contributors + [![Contributors figure](https://contrib.rocks/image?repo=PathoGenOmics-Lab/Case-study-SARS-CoV-2)](https://github.com/PathoGenOmics-Lab/Case-study-SARS-CoV-2/graphs/contributors) ## Citation