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GEO data importer does not support multiple-series-file-containing data sets. #36

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GoogleCodeExporter opened this issue May 15, 2015 · 2 comments

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@GoogleCodeExporter
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* Start ChiBe
* Load a network
* Select Data > Fetch From GEO
* Enter GSE36139 as id and submit

It fails since the data-set consists of more than one matrix-series files. 
See: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36139

Original issue reported on code.google.com by [email protected] on 28 Sep 2012 at 4:48

@GoogleCodeExporter
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Multiple data files can be result of two things: multiple platforms, or too big 
sample size, or both. We cannot combine data from multiple platforms because of 
normalization issues.

ChiBE should detect the platforms and ask the user which one they want to load. 
Additionally, we may provide a mechanism that user can enter platform ID at the 
start.

If sample size is large and there are multiple files per platform, then ChiBE 
should merge them.

Original comment by [email protected] on 12 Oct 2012 at 10:14

@GoogleCodeExporter
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I implemented support for multiple platforms and/or multiple data files. But 
this caused substantial changes in the code and needs to be tested.

Original comment by [email protected] on 14 Jan 2013 at 6:50

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