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Node: qsirecon_0_23_wf.sub-001_multishell_scalarfest.sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf.fit_noddi_gm.plot_peaks
Working directory: /tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/plot_peaks
Node inputs:
args = <undefined>
background_image = <undefined>
directions_file = <undefined>
environ = {}
fib_file = <undefined>
mask_file = <undefined>
mif_file = <undefined>
odf_file = <undefined>
odf_report = odfs_mosaic.png
odf_rois = <undefined>
peak_report = peaks_mosaic.png
peaks_only = False
subtract_iso = False
Traceback (most recent call last):
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
result = self._run_interface(execute=True)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
return self._run_command(execute)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node plot_peaks.
Cmdline:
recon_plot --background_image /tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/recon_noddi/study/subject/AMICO/NODDI/fit_NDI.nii.gz --fib /tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/convert_to_fibgz/fit_NDI.fib --mask_file /tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_dwi_specific_anat_wf/resample_mask/sub-001_desc-brain_mask_trans.nii.gz --odfs_image odfs_mosaic.png --peaks_image peaks_mosaic.png
Stdout:
241016-14:33:30,904 nipype.interface INFO:
converting /tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/convert_to_fibgz/fit_NDI.fib to plot ODF/peaks
Stderr:
Killed
Traceback:
Traceback (most recent call last):
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 453, in aggregate_outputs
setattr(outputs, key, val)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'peak_report' trait of a _ReconPeaksReportOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/plot_peaks/peaks_mosaic.png' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 400, in run
outputs = self.aggregate_outputs(runtime)
File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 460, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/tmp/qsirecon_0_23_wf/sub-001_multishell_scalarfest/sub_001_ses_01_dir_AP_run_001_space_T1w_desc_preproc_recon_wf/fit_noddi_gm/plot_peaks/peaks_mosaic.png' for output 'peak_report' of a CLIReconPeaksReport interface
The text was updated successfully, but these errors were encountered:
Summary
Piggybacking on #122, outputting the peaks mosaic crashes when attempting to do so, specifically for
fit_noddi_gm
.Additional details
What were you trying to do?
What did you expect to happen?
What actually happened?
Reproducing the bug
Crash log
The text was updated successfully, but these errors were encountered: