pytest.yml

name: pytest

on:
  push:
    branches:
      - master
      - hotfixes
      - develop
  pull_request:
    branches:
      - master
      - hotfixes
      - develop

jobs:
  build:
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        debian-version: [ '10', '11', '12' ]
        include:
          - debian-version: '10'
            python-version: '3.7'
            postgres-version: '11'
            postgis-version: '2.5'
          - debian-version: '11'
            python-version: '3.9'
            postgres-version: '13'
            postgis-version: '3.2'
          - debian-version: '12'
            python-version: '3.11'
            postgres-version: '15'
            postgis-version: '3.3'

    name: Debian ${{ matrix.debian-version }}

    services:
      postgres:
        image: postgis/postgis:${{ matrix.postgres-version }}-${{ matrix.postgis-version }}
        env:
          POSTGRES_DB: geonature2db
          POSTGRES_PASSWORD: geonatpasswd
          POSTGRES_USER: geonatadmin
        ports:
          - 5432:5432
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
      - name: Add postgis_raster database extension
        if: ${{ matrix.postgis-version >= 3 }}
        run: |
          psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "postgis_raster";'
        env:
          PGPASSWORD: geonatpasswd
      - uses: actions/checkout@v3
        with:
          submodules: true
      - name: Add database extensions
        run: |
          psql -h localhost -U geonatadmin -d geonature2db -f install/assets/db/add_pg_extensions.sql
        env:
          PGPASSWORD: geonatpasswd
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          cache: "pip"
      - name: Install GDAL
        run: |
          sudo apt update
          sudo apt install -y libgdal-dev
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install \
            -e ..[tests] \
            -r requirements-dev.txt
        working-directory: ./backend
      - name: Show database branches and dependencies
        run: |
          geonature db status --dependencies
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Install database
        run: |
          install/03b_populate_db_for_test.sh
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Show database status
        run: |
          geonature db status
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Install core modules backend
        run: |
          pip install -e contrib/occtax
          pip install -e contrib/gn_module_occhab
          pip install -e contrib/gn_module_validation
      - name: Install core modules database
        run: |
          geonature upgrade-modules-db
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Show database status
        run: |
          geonature db status --dependencies
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Test with pytest
        run: |
          pytest -v --cov --cov-report xml
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Upload coverage to Codecov
        if: ${{ matrix.debian-version == '11' }}
        uses: codecov/codecov-action@v3
        with:
          flags: pytest