diff --git a/segmentation/imagej-threshold-apply-tool/.bumpversion.cfg b/segmentation/imagej-threshold-apply-tool/.bumpversion.cfg index c8d75ff90..de1af8f1a 100644 --- a/segmentation/imagej-threshold-apply-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-apply-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.1 +current_version = 0.5.2-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-apply-tool/README.md b/segmentation/imagej-threshold-apply-tool/README.md index 72f1833a0..ccde6f23f 100644 --- a/segmentation/imagej-threshold-apply-tool/README.md +++ b/segmentation/imagej-threshold-apply-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold apply (v0.5.1) +# ImageJ threshold apply (v0.5.2-dev0) This plugin applies a constant manual threshold value to an input collection. (Thresholding)[https://en.wikipedia.org/wiki/Thresholding_(image_processing)] converts all pixel values in an image to either 1 or 0 depending on diff --git a/segmentation/imagej-threshold-apply-tool/VERSION b/segmentation/imagej-threshold-apply-tool/VERSION index 4b9fcbec1..4403719b7 100644 --- a/segmentation/imagej-threshold-apply-tool/VERSION +++ b/segmentation/imagej-threshold-apply-tool/VERSION @@ -1 +1 @@ -0.5.1 +0.5.2-dev0 diff --git a/segmentation/imagej-threshold-apply-tool/plugin.json b/segmentation/imagej-threshold-apply-tool/plugin.json index 5c6d8ebfa..bec796c42 100644 --- a/segmentation/imagej-threshold-apply-tool/plugin.json +++ b/segmentation/imagej-threshold-apply-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold apply", - "version": "0.5.1", + "version": "0.5.2-dev0", "title": "ImageJ threshold apply", "description": "This plugin applies a constant or manual threshold to an input collection.", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-apply-tool:0.5.1", + "containerId": "polusai/imagej-threshold-apply-tool:0.5.2-dev0", "baseCommand": [ "python3", "-m", diff --git a/segmentation/imagej-threshold-apply-tool/pyproject.toml b/segmentation/imagej-threshold-apply-tool/pyproject.toml index b470e504b..1c28c2cf8 100644 --- a/segmentation/imagej-threshold-apply-tool/pyproject.toml +++ b/segmentation/imagej-threshold-apply-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-apply" -version = "0.5.1" +version = "0.5.2-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-apply-tool/src/polus/images/segmentation/imagej_threshold_apply/__init__.py b/segmentation/imagej-threshold-apply-tool/src/polus/images/segmentation/imagej_threshold_apply/__init__.py index c1838de7a..c1a5251c0 100644 --- a/segmentation/imagej-threshold-apply-tool/src/polus/images/segmentation/imagej_threshold_apply/__init__.py +++ b/segmentation/imagej-threshold-apply-tool/src/polus/images/segmentation/imagej_threshold_apply/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold Apply tool.""" -__version__ = "0.5.1" +__version__ = "0.5.2-dev0" import logging diff --git a/segmentation/imagej-threshold-huang-tool/.bumpversion.cfg b/segmentation/imagej-threshold-huang-tool/.bumpversion.cfg index b6d1c3467..f72f28786 100644 --- a/segmentation/imagej-threshold-huang-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-huang-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.1 +current_version = 0.5.2-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-huang-tool/README.md b/segmentation/imagej-threshold-huang-tool/README.md index 6b2478b9e..c62b4f6d0 100644 --- a/segmentation/imagej-threshold-huang-tool/README.md +++ b/segmentation/imagej-threshold-huang-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold huang (v0.5.1) +# ImageJ threshold huang (v0.5.2-dev0) This plugin implements Huang's threshold method proposed in Image Thresholding by Minimizing the Measures of Fuzziness, Huang (1995). This method determines an optimal thresholding value such that the fuzziness measure between the original image and its binary version is minimized. diff --git a/segmentation/imagej-threshold-huang-tool/VERSION b/segmentation/imagej-threshold-huang-tool/VERSION index 4b9fcbec1..4403719b7 100644 --- a/segmentation/imagej-threshold-huang-tool/VERSION +++ b/segmentation/imagej-threshold-huang-tool/VERSION @@ -1 +1 @@ -0.5.1 +0.5.2-dev0 diff --git a/segmentation/imagej-threshold-huang-tool/plugin.json b/segmentation/imagej-threshold-huang-tool/plugin.json index 01f2b912b..09f36df6c 100644 --- a/segmentation/imagej-threshold-huang-tool/plugin.json +++ b/segmentation/imagej-threshold-huang-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold huang", - "version": "0.5.1", + "version": "0.5.2-dev0", "title": "ImageJ threshold huang", "description": "This plugin implements Huang's threshold method by Huang Wang.", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-huang-tool:0.5.1", + "containerId": "polusai/imagej-threshold-huang-tool:0.5.2-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-huang-tool/pyproject.toml b/segmentation/imagej-threshold-huang-tool/pyproject.toml index 69a5cfc3c..87a2c2386 100644 --- a/segmentation/imagej-threshold-huang-tool/pyproject.toml +++ b/segmentation/imagej-threshold-huang-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-huang" -version = "0.5.1" +version = "0.5.2-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-huang-tool/src/polus/images/segmentation/imagej_threshold_huang/__init__.py b/segmentation/imagej-threshold-huang-tool/src/polus/images/segmentation/imagej_threshold_huang/__init__.py index 8f0afbb5f..ac36318c9 100644 --- a/segmentation/imagej-threshold-huang-tool/src/polus/images/segmentation/imagej_threshold_huang/__init__.py +++ b/segmentation/imagej-threshold-huang-tool/src/polus/images/segmentation/imagej_threshold_huang/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold Huang tool.""" -__version__ = "0.5.1" +__version__ = "0.5.2-dev0" import logging diff --git a/segmentation/imagej-threshold-ij1-tool/.bumpversion.cfg b/segmentation/imagej-threshold-ij1-tool/.bumpversion.cfg index cda6270b0..110f33955 100644 --- a/segmentation/imagej-threshold-ij1-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-ij1-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-ij1-tool/README.md b/segmentation/imagej-threshold-ij1-tool/README.md index 8313d67dc..f3db6a905 100644 --- a/segmentation/imagej-threshold-ij1-tool/README.md +++ b/segmentation/imagej-threshold-ij1-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold huang (v0.5.0) +# ImageJ threshold huang (v0.5.1-dev0) This plugin implements the [default thresholding method](https://imagej.net/plugins/auto-threshold#default) from ImageJ 1.x. The default method as explained by ImageJ is a variation of the IsoData algorithm. diff --git a/segmentation/imagej-threshold-ij1-tool/VERSION b/segmentation/imagej-threshold-ij1-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-ij1-tool/VERSION +++ b/segmentation/imagej-threshold-ij1-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-ij1-tool/plugin.json b/segmentation/imagej-threshold-ij1-tool/plugin.json index 1df599b1d..d1ae89edb 100644 --- a/segmentation/imagej-threshold-ij1-tool/plugin.json +++ b/segmentation/imagej-threshold-ij1-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold huang", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold huang", "description": "This plugin implements Huang's threshold method by Huang Wang.", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-huang-tool:0.5.0", + "containerId": "polusai/imagej-threshold-huang-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-ij1-tool/pyproject.toml b/segmentation/imagej-threshold-ij1-tool/pyproject.toml index d0dcab2f9..66bda3f58 100644 --- a/segmentation/imagej-threshold-ij1-tool/pyproject.toml +++ b/segmentation/imagej-threshold-ij1-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-ij1" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-ij1-tool/src/polus/images/segmentation/imagej_threshold_ij1/__init__.py b/segmentation/imagej-threshold-ij1-tool/src/polus/images/segmentation/imagej_threshold_ij1/__init__.py index 919f0e8ec..1b7ef2e1d 100644 --- a/segmentation/imagej-threshold-ij1-tool/src/polus/images/segmentation/imagej_threshold_ij1/__init__.py +++ b/segmentation/imagej-threshold-ij1-tool/src/polus/images/segmentation/imagej_threshold_ij1/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold IJ1 tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-intermodes-tool/.bumpversion.cfg b/segmentation/imagej-threshold-intermodes-tool/.bumpversion.cfg index 60dbe49dc..a60e57c0f 100644 --- a/segmentation/imagej-threshold-intermodes-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-intermodes-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-intermodes-tool/README.md b/segmentation/imagej-threshold-intermodes-tool/README.md index 4f7a919f2..c8f2b1514 100644 --- a/segmentation/imagej-threshold-intermodes-tool/README.md +++ b/segmentation/imagej-threshold-intermodes-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold intermodes (v0.5.0) +# ImageJ threshold intermodes (v0.5.1-dev0) As described by [ImageJ](https://imagej.net/plugins/auto-threshold#intermodes) this plugin implements the threshold method described in Prewitt, J. M. S., & Mendelsohn, M. L. (2006). THE ANALYSIS OF CELL IMAGES*. diff --git a/segmentation/imagej-threshold-intermodes-tool/VERSION b/segmentation/imagej-threshold-intermodes-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-intermodes-tool/VERSION +++ b/segmentation/imagej-threshold-intermodes-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-intermodes-tool/plugin.json b/segmentation/imagej-threshold-intermodes-tool/plugin.json index b1e86a1ea..1c9371031 100644 --- a/segmentation/imagej-threshold-intermodes-tool/plugin.json +++ b/segmentation/imagej-threshold-intermodes-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold intermodes", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold intermodes", "description": "This plugin implements the Intermodes thresholding operation, where it is assumed the input image has bimodal distribution of pixel values", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-intermodes-tool:0.5.0", + "containerId": "polusai/imagej-threshold-intermodes-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-intermodes-tool/pyproject.toml b/segmentation/imagej-threshold-intermodes-tool/pyproject.toml index c89df2196..101b20544 100644 --- a/segmentation/imagej-threshold-intermodes-tool/pyproject.toml +++ b/segmentation/imagej-threshold-intermodes-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-intermodes" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-intermodes-tool/src/polus/images/segmentation/imagej_threshold_intermodes/__init__.py b/segmentation/imagej-threshold-intermodes-tool/src/polus/images/segmentation/imagej_threshold_intermodes/__init__.py index 810162926..1a09c4123 100644 --- a/segmentation/imagej-threshold-intermodes-tool/src/polus/images/segmentation/imagej_threshold_intermodes/__init__.py +++ b/segmentation/imagej-threshold-intermodes-tool/src/polus/images/segmentation/imagej_threshold_intermodes/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold intermodes tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-isodata-tool/.bumpversion.cfg b/segmentation/imagej-threshold-isodata-tool/.bumpversion.cfg index a91c23a1a..904eb42c2 100644 --- a/segmentation/imagej-threshold-isodata-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-isodata-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-isodata-tool/README.md b/segmentation/imagej-threshold-isodata-tool/README.md index 22e397a5f..1dbf1d773 100644 --- a/segmentation/imagej-threshold-isodata-tool/README.md +++ b/segmentation/imagej-threshold-isodata-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold isodata (v0.5.0) +# ImageJ threshold isodata (v0.5.1-dev0) Iterative procedure based on the isodata algorithm of: Picture Thresholding Using an Iterative Selection Method. (1978). IEEE Transactions on Systems, Man, diff --git a/segmentation/imagej-threshold-isodata-tool/VERSION b/segmentation/imagej-threshold-isodata-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-isodata-tool/VERSION +++ b/segmentation/imagej-threshold-isodata-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-isodata-tool/plugin.json b/segmentation/imagej-threshold-isodata-tool/plugin.json index 9bb867598..2a346ebdd 100644 --- a/segmentation/imagej-threshold-isodata-tool/plugin.json +++ b/segmentation/imagej-threshold-isodata-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold isodata", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold isodata", "description": "This plugin implements the isodata thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-isodata-tool:0.5.0", + "containerId": "polusai/imagej-threshold-isodata-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-isodata-tool/pyproject.toml b/segmentation/imagej-threshold-isodata-tool/pyproject.toml index 7e4d289c8..a2bfeb021 100644 --- a/segmentation/imagej-threshold-isodata-tool/pyproject.toml +++ b/segmentation/imagej-threshold-isodata-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-isodata" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-isodata-tool/src/polus/images/segmentation/imagej_threshold_isodata/__init__.py b/segmentation/imagej-threshold-isodata-tool/src/polus/images/segmentation/imagej_threshold_isodata/__init__.py index b49ddc521..927ef76ee 100644 --- a/segmentation/imagej-threshold-isodata-tool/src/polus/images/segmentation/imagej_threshold_isodata/__init__.py +++ b/segmentation/imagej-threshold-isodata-tool/src/polus/images/segmentation/imagej_threshold_isodata/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold isodata tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-li-tool/.bumpversion.cfg b/segmentation/imagej-threshold-li-tool/.bumpversion.cfg index 8d8a0e337..163aa1200 100644 --- a/segmentation/imagej-threshold-li-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-li-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-li-tool/README.md b/segmentation/imagej-threshold-li-tool/README.md index 790bed553..6f28127a8 100644 --- a/segmentation/imagej-threshold-li-tool/README.md +++ b/segmentation/imagej-threshold-li-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold li (v0.5.0) +# ImageJ threshold li (v0.5.1-dev0) Implements Li’s Minimum Cross Entropy thresholding method based on the iterative version of the algorithm. This is an iterative method to find the threshold diff --git a/segmentation/imagej-threshold-li-tool/VERSION b/segmentation/imagej-threshold-li-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-li-tool/VERSION +++ b/segmentation/imagej-threshold-li-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-li-tool/plugin.json b/segmentation/imagej-threshold-li-tool/plugin.json index ca8b6bf00..338dd044e 100644 --- a/segmentation/imagej-threshold-li-tool/plugin.json +++ b/segmentation/imagej-threshold-li-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold li", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold li", "description": "This plugin implements the li thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-li-tool:0.5.0", + "containerId": "polusai/imagej-threshold-li-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-li-tool/pyproject.toml b/segmentation/imagej-threshold-li-tool/pyproject.toml index 952d5789c..963a7ab17 100644 --- a/segmentation/imagej-threshold-li-tool/pyproject.toml +++ b/segmentation/imagej-threshold-li-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-li" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-li-tool/src/polus/images/segmentation/imagej_threshold_li/__init__.py b/segmentation/imagej-threshold-li-tool/src/polus/images/segmentation/imagej_threshold_li/__init__.py index 84625aff3..56141b4fd 100644 --- a/segmentation/imagej-threshold-li-tool/src/polus/images/segmentation/imagej_threshold_li/__init__.py +++ b/segmentation/imagej-threshold-li-tool/src/polus/images/segmentation/imagej_threshold_li/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold li tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-maxentropy-tool/.bumpversion.cfg b/segmentation/imagej-threshold-maxentropy-tool/.bumpversion.cfg index 190ae068a..11e5889dd 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-maxentropy-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-maxentropy-tool/README.md b/segmentation/imagej-threshold-maxentropy-tool/README.md index fbf5f630f..3e1926799 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/README.md +++ b/segmentation/imagej-threshold-maxentropy-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold maxentropy (v0.5.0) +# ImageJ threshold maxentropy (v0.5.1-dev0) Implements Kapur-Sahoo-Wong (Maximum Entropy) thresholding method as described in: Kapur, J. N., Sahoo, P. K., & Wong, A. K. C. (1985). A new method diff --git a/segmentation/imagej-threshold-maxentropy-tool/VERSION b/segmentation/imagej-threshold-maxentropy-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/VERSION +++ b/segmentation/imagej-threshold-maxentropy-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-maxentropy-tool/plugin.json b/segmentation/imagej-threshold-maxentropy-tool/plugin.json index 7549e17e3..a1dfeecbf 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/plugin.json +++ b/segmentation/imagej-threshold-maxentropy-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold maxentropy", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold maxentropy", "description": "This plugin implements the maxentropy thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-maxentropy-tool:0.5.0", + "containerId": "polusai/imagej-threshold-maxentropy-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-maxentropy-tool/pyproject.toml b/segmentation/imagej-threshold-maxentropy-tool/pyproject.toml index 093d49df7..d8695befa 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/pyproject.toml +++ b/segmentation/imagej-threshold-maxentropy-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-maxentropy" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-maxentropy-tool/src/polus/images/segmentation/imagej_threshold_maxentropy/__init__.py b/segmentation/imagej-threshold-maxentropy-tool/src/polus/images/segmentation/imagej_threshold_maxentropy/__init__.py index 07c38d2f2..0d545647a 100644 --- a/segmentation/imagej-threshold-maxentropy-tool/src/polus/images/segmentation/imagej_threshold_maxentropy/__init__.py +++ b/segmentation/imagej-threshold-maxentropy-tool/src/polus/images/segmentation/imagej_threshold_maxentropy/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold li tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/.bumpversion.cfg b/segmentation/imagej-threshold-maxlikelihood-tool/.bumpversion.cfg index d07b1f003..abd17b608 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-maxlikelihood-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/README.md b/segmentation/imagej-threshold-maxlikelihood-tool/README.md index cac35d0d6..8df6ea882 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/README.md +++ b/segmentation/imagej-threshold-maxlikelihood-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold maxlikelihood (v0.5.0) +# ImageJ threshold maxlikelihood (v0.5.1-dev0) Implements a maximum likelihood threshold method using the [EM algorithm](https://en.wikipedia.org/wiki/Expectation%E2%80%93maximization_algorithm) by Dempster, Laird, Rubin and Glasbey: diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/VERSION b/segmentation/imagej-threshold-maxlikelihood-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/VERSION +++ b/segmentation/imagej-threshold-maxlikelihood-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/plugin.json b/segmentation/imagej-threshold-maxlikelihood-tool/plugin.json index a96d59600..48515543f 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/plugin.json +++ b/segmentation/imagej-threshold-maxlikelihood-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold maxlikelihood", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold maxlikelihood", "description": "This plugin implements the maxlikelihood thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-maxlikelihood-tool:0.5.0", + "containerId": "polusai/imagej-threshold-maxlikelihood-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/pyproject.toml b/segmentation/imagej-threshold-maxlikelihood-tool/pyproject.toml index 143f0ad6f..93550c853 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/pyproject.toml +++ b/segmentation/imagej-threshold-maxlikelihood-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-maxlikelihood" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-maxlikelihood-tool/src/polus/images/segmentation/imagej_threshold_maxlikelihood/__init__.py b/segmentation/imagej-threshold-maxlikelihood-tool/src/polus/images/segmentation/imagej_threshold_maxlikelihood/__init__.py index 242b92c4d..edfbb4095 100644 --- a/segmentation/imagej-threshold-maxlikelihood-tool/src/polus/images/segmentation/imagej_threshold_maxlikelihood/__init__.py +++ b/segmentation/imagej-threshold-maxlikelihood-tool/src/polus/images/segmentation/imagej_threshold_maxlikelihood/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold li tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-mean-tool/.bumpversion.cfg b/segmentation/imagej-threshold-mean-tool/.bumpversion.cfg index 22a637817..e8747f6ab 100644 --- a/segmentation/imagej-threshold-mean-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-mean-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-mean-tool/README.md b/segmentation/imagej-threshold-mean-tool/README.md index 8cb649997..895d46b75 100644 --- a/segmentation/imagej-threshold-mean-tool/README.md +++ b/segmentation/imagej-threshold-mean-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold mean (v0.5.0) +# ImageJ threshold mean (v0.5.1-dev0) Uses the mean of grey levels as the threshold. It is used by some other methods diff --git a/segmentation/imagej-threshold-mean-tool/VERSION b/segmentation/imagej-threshold-mean-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-mean-tool/VERSION +++ b/segmentation/imagej-threshold-mean-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-mean-tool/plugin.json b/segmentation/imagej-threshold-mean-tool/plugin.json index dd5abd4ea..9aba7c9be 100644 --- a/segmentation/imagej-threshold-mean-tool/plugin.json +++ b/segmentation/imagej-threshold-mean-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold mean", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold mean", "description": "This plugin implements the mean thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-mean-tool:0.5.0", + "containerId": "polusai/imagej-threshold-mean-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-mean-tool/pyproject.toml b/segmentation/imagej-threshold-mean-tool/pyproject.toml index ce5728ada..252f804e9 100644 --- a/segmentation/imagej-threshold-mean-tool/pyproject.toml +++ b/segmentation/imagej-threshold-mean-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-mean" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-mean-tool/src/polus/images/segmentation/imagej_threshold_mean/__init__.py b/segmentation/imagej-threshold-mean-tool/src/polus/images/segmentation/imagej_threshold_mean/__init__.py index 3a068a2fc..4bc99f71b 100644 --- a/segmentation/imagej-threshold-mean-tool/src/polus/images/segmentation/imagej_threshold_mean/__init__.py +++ b/segmentation/imagej-threshold-mean-tool/src/polus/images/segmentation/imagej_threshold_mean/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold mean tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-minerror-tool/.bumpversion.cfg b/segmentation/imagej-threshold-minerror-tool/.bumpversion.cfg index e7c2b56c2..f5dca5a82 100644 --- a/segmentation/imagej-threshold-minerror-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-minerror-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-minerror-tool/README.md b/segmentation/imagej-threshold-minerror-tool/README.md index f4b53741c..638beb897 100644 --- a/segmentation/imagej-threshold-minerror-tool/README.md +++ b/segmentation/imagej-threshold-minerror-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold minerror (v0.5.0) +# ImageJ threshold minerror (v0.5.1-dev0) An iterative implementation of Kittler and Illingworth’s Minimum Error thresholding as described by [ImageJ](https://imagej.net/plugins/auto-threshold#minerrori). diff --git a/segmentation/imagej-threshold-minerror-tool/VERSION b/segmentation/imagej-threshold-minerror-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-minerror-tool/VERSION +++ b/segmentation/imagej-threshold-minerror-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-minerror-tool/plugin.json b/segmentation/imagej-threshold-minerror-tool/plugin.json index 012e4b413..0f14b749f 100644 --- a/segmentation/imagej-threshold-minerror-tool/plugin.json +++ b/segmentation/imagej-threshold-minerror-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold minerror", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold minerror", "description": "This plugin implements the minerror thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-minerror-tool:0.5.0", + "containerId": "polusai/imagej-threshold-minerror-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-minerror-tool/pyproject.toml b/segmentation/imagej-threshold-minerror-tool/pyproject.toml index e5a5e1d50..cd76c33e7 100644 --- a/segmentation/imagej-threshold-minerror-tool/pyproject.toml +++ b/segmentation/imagej-threshold-minerror-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-minerror" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-minerror-tool/src/polus/images/segmentation/imagej_threshold_minerror/__init__.py b/segmentation/imagej-threshold-minerror-tool/src/polus/images/segmentation/imagej_threshold_minerror/__init__.py index 91b232eee..bba77e727 100644 --- a/segmentation/imagej-threshold-minerror-tool/src/polus/images/segmentation/imagej_threshold_minerror/__init__.py +++ b/segmentation/imagej-threshold-minerror-tool/src/polus/images/segmentation/imagej_threshold_minerror/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold minerror tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-minimum-tool/.bumpversion.cfg b/segmentation/imagej-threshold-minimum-tool/.bumpversion.cfg index e824501c7..74e9cf0df 100644 --- a/segmentation/imagej-threshold-minimum-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-minimum-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-minimum-tool/README.md b/segmentation/imagej-threshold-minimum-tool/README.md index 12874aa7a..94906102d 100644 --- a/segmentation/imagej-threshold-minimum-tool/README.md +++ b/segmentation/imagej-threshold-minimum-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold minimum (v0.5.0) +# ImageJ threshold minimum (v0.5.1-dev0) As described by [ImageJ](https://imagej.net/plugins/auto-threshold#minimum) this operation is similar to the Intermodes method, this assumes a bimodal histogram. diff --git a/segmentation/imagej-threshold-minimum-tool/VERSION b/segmentation/imagej-threshold-minimum-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-minimum-tool/VERSION +++ b/segmentation/imagej-threshold-minimum-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-minimum-tool/plugin.json b/segmentation/imagej-threshold-minimum-tool/plugin.json index 9d71bce2d..0d61f1016 100644 --- a/segmentation/imagej-threshold-minimum-tool/plugin.json +++ b/segmentation/imagej-threshold-minimum-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold minimum", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold minimum", "description": "This plugin implements the minimum thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-minimum-tool:0.5.0", + "containerId": "polusai/imagej-threshold-minimum-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-minimum-tool/pyproject.toml b/segmentation/imagej-threshold-minimum-tool/pyproject.toml index eb0e7b4d5..8f6f344b9 100644 --- a/segmentation/imagej-threshold-minimum-tool/pyproject.toml +++ b/segmentation/imagej-threshold-minimum-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-minimum" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-minimum-tool/src/polus/images/segmentation/imagej_threshold_minimum/__init__.py b/segmentation/imagej-threshold-minimum-tool/src/polus/images/segmentation/imagej_threshold_minimum/__init__.py index 45815f8a7..033d91ade 100644 --- a/segmentation/imagej-threshold-minimum-tool/src/polus/images/segmentation/imagej_threshold_minimum/__init__.py +++ b/segmentation/imagej-threshold-minimum-tool/src/polus/images/segmentation/imagej_threshold_minimum/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold minimum tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-moments-tool/.bumpversion.cfg b/segmentation/imagej-threshold-moments-tool/.bumpversion.cfg index 9e39144b0..e16697554 100644 --- a/segmentation/imagej-threshold-moments-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-moments-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-moments-tool/README.md b/segmentation/imagej-threshold-moments-tool/README.md index af6fabe50..c3206fc84 100644 --- a/segmentation/imagej-threshold-moments-tool/README.md +++ b/segmentation/imagej-threshold-moments-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold moments (v0.5.0) +# ImageJ threshold moments (v0.5.1-dev0) Tsai’s method attempts to preserve the moments of the original image in the thresholded result as described by [ImageJ](https://imagej.net/plugins/auto-threshold#moments). diff --git a/segmentation/imagej-threshold-moments-tool/VERSION b/segmentation/imagej-threshold-moments-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-moments-tool/VERSION +++ b/segmentation/imagej-threshold-moments-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-moments-tool/plugin.json b/segmentation/imagej-threshold-moments-tool/plugin.json index da2d1a8ca..35ca1cc88 100644 --- a/segmentation/imagej-threshold-moments-tool/plugin.json +++ b/segmentation/imagej-threshold-moments-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold moments", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold moments", "description": "This plugin implements the moments thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-moments-tool:0.5.0", + "containerId": "polusai/imagej-threshold-moments-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-moments-tool/pyproject.toml b/segmentation/imagej-threshold-moments-tool/pyproject.toml index 320412c26..fe197fe1e 100644 --- a/segmentation/imagej-threshold-moments-tool/pyproject.toml +++ b/segmentation/imagej-threshold-moments-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-moments" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-moments-tool/src/polus/images/segmentation/imagej_threshold_moments/__init__.py b/segmentation/imagej-threshold-moments-tool/src/polus/images/segmentation/imagej_threshold_moments/__init__.py index b6793b22a..a9bad4d5c 100644 --- a/segmentation/imagej-threshold-moments-tool/src/polus/images/segmentation/imagej_threshold_moments/__init__.py +++ b/segmentation/imagej-threshold-moments-tool/src/polus/images/segmentation/imagej_threshold_moments/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold moments tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-otsu-tool/.bumpversion.cfg b/segmentation/imagej-threshold-otsu-tool/.bumpversion.cfg index 179514927..d57c1f110 100644 --- a/segmentation/imagej-threshold-otsu-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-otsu-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-otsu-tool/README.md b/segmentation/imagej-threshold-otsu-tool/README.md index b47f2071c..7ee492270 100644 --- a/segmentation/imagej-threshold-otsu-tool/README.md +++ b/segmentation/imagej-threshold-otsu-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold otsu (v0.5.0) +# ImageJ threshold otsu (v0.5.1-dev0) As described by [ImageJ](https://imagej.net/plugins/auto-threshold#otsu), Otsu’s threshold clustering algorithm searches for the threshold that minimizes diff --git a/segmentation/imagej-threshold-otsu-tool/VERSION b/segmentation/imagej-threshold-otsu-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-otsu-tool/VERSION +++ b/segmentation/imagej-threshold-otsu-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-otsu-tool/plugin.json b/segmentation/imagej-threshold-otsu-tool/plugin.json index c471e6363..034381ff4 100644 --- a/segmentation/imagej-threshold-otsu-tool/plugin.json +++ b/segmentation/imagej-threshold-otsu-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold otsu", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold otsu", "description": "This plugin implements the otsu thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-otsu-tool:0.5.0", + "containerId": "polusai/imagej-threshold-otsu-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-otsu-tool/pyproject.toml b/segmentation/imagej-threshold-otsu-tool/pyproject.toml index b038e9dad..64af71929 100644 --- a/segmentation/imagej-threshold-otsu-tool/pyproject.toml +++ b/segmentation/imagej-threshold-otsu-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-otsu" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-otsu-tool/src/polus/images/segmentation/imagej_threshold_otsu/__init__.py b/segmentation/imagej-threshold-otsu-tool/src/polus/images/segmentation/imagej_threshold_otsu/__init__.py index c3ef22584..a7f720f3d 100644 --- a/segmentation/imagej-threshold-otsu-tool/src/polus/images/segmentation/imagej_threshold_otsu/__init__.py +++ b/segmentation/imagej-threshold-otsu-tool/src/polus/images/segmentation/imagej_threshold_otsu/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold otsu tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-percentile-tool/.bumpversion.cfg b/segmentation/imagej-threshold-percentile-tool/.bumpversion.cfg index 7d772ad59..8b68ecdd8 100644 --- a/segmentation/imagej-threshold-percentile-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-percentile-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-percentile-tool/README.md b/segmentation/imagej-threshold-percentile-tool/README.md index bd717d569..9856fa4c4 100644 --- a/segmentation/imagej-threshold-percentile-tool/README.md +++ b/segmentation/imagej-threshold-percentile-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold percentile (v0.5.0) +# ImageJ threshold percentile (v0.5.1-dev0) As described by [ImageJ](https://imagej.net/plugins/auto-threshold#percentile) this plugin assumes the fraction of foreground pixels to be 0.5. This method was diff --git a/segmentation/imagej-threshold-percentile-tool/VERSION b/segmentation/imagej-threshold-percentile-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-percentile-tool/VERSION +++ b/segmentation/imagej-threshold-percentile-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-percentile-tool/plugin.json b/segmentation/imagej-threshold-percentile-tool/plugin.json index e56c3710d..7b66e0208 100644 --- a/segmentation/imagej-threshold-percentile-tool/plugin.json +++ b/segmentation/imagej-threshold-percentile-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold percentile", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold percentile", "description": "This plugin implements the percentile thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-percentile-tool:0.5.0", + "containerId": "polusai/imagej-threshold-percentile-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-percentile-tool/pyproject.toml b/segmentation/imagej-threshold-percentile-tool/pyproject.toml index d47d7de19..fb6322f8d 100644 --- a/segmentation/imagej-threshold-percentile-tool/pyproject.toml +++ b/segmentation/imagej-threshold-percentile-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-percentile" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-percentile-tool/src/polus/images/segmentation/imagej_threshold_percentile/__init__.py b/segmentation/imagej-threshold-percentile-tool/src/polus/images/segmentation/imagej_threshold_percentile/__init__.py index f967b6e87..3dca38354 100644 --- a/segmentation/imagej-threshold-percentile-tool/src/polus/images/segmentation/imagej_threshold_percentile/__init__.py +++ b/segmentation/imagej-threshold-percentile-tool/src/polus/images/segmentation/imagej_threshold_percentile/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold percentile tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-renyientropy-tool/.bumpversion.cfg b/segmentation/imagej-threshold-renyientropy-tool/.bumpversion.cfg index 9d517da01..cebc0dedf 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-renyientropy-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-renyientropy-tool/README.md b/segmentation/imagej-threshold-renyientropy-tool/README.md index 4d0b91feb..fb70c785f 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/README.md +++ b/segmentation/imagej-threshold-renyientropy-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold renyientropy (v0.5.0) +# ImageJ threshold renyientropy (v0.5.1-dev0) Uses Renyi entropy method by Kapur, Sahoo, to threshold an input collection as described by [ImageJ](https://imagej.net/plugins/auto-threshold#renyientropy). diff --git a/segmentation/imagej-threshold-renyientropy-tool/VERSION b/segmentation/imagej-threshold-renyientropy-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/VERSION +++ b/segmentation/imagej-threshold-renyientropy-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-renyientropy-tool/plugin.json b/segmentation/imagej-threshold-renyientropy-tool/plugin.json index 0603496d8..f508aa2ab 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/plugin.json +++ b/segmentation/imagej-threshold-renyientropy-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold renyientropy", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold renyientropy", "description": "This plugin implements the renyientropy thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-renyientropy-tool:0.5.0", + "containerId": "polusai/imagej-threshold-renyientropy-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-renyientropy-tool/pyproject.toml b/segmentation/imagej-threshold-renyientropy-tool/pyproject.toml index a9aef9dd2..0039d6004 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/pyproject.toml +++ b/segmentation/imagej-threshold-renyientropy-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-renyientropy" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-renyientropy-tool/src/polus/images/segmentation/imagej_threshold_renyientropy/__init__.py b/segmentation/imagej-threshold-renyientropy-tool/src/polus/images/segmentation/imagej_threshold_renyientropy/__init__.py index b71548a52..f16bb7bc5 100644 --- a/segmentation/imagej-threshold-renyientropy-tool/src/polus/images/segmentation/imagej_threshold_renyientropy/__init__.py +++ b/segmentation/imagej-threshold-renyientropy-tool/src/polus/images/segmentation/imagej_threshold_renyientropy/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold renyientropy tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-rosin-tool/.bumpversion.cfg b/segmentation/imagej-threshold-rosin-tool/.bumpversion.cfg index 960a22311..b9a2a479a 100644 --- a/segmentation/imagej-threshold-rosin-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-rosin-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-rosin-tool/README.md b/segmentation/imagej-threshold-rosin-tool/README.md index 98c75405a..1688f1e60 100644 --- a/segmentation/imagej-threshold-rosin-tool/README.md +++ b/segmentation/imagej-threshold-rosin-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold rosin (v0.5.0) +# ImageJ threshold rosin (v0.5.1-dev0) Implements Rosin's thresholding method for unimodal distributions. This method assumes that the histogram of the image has a unimodal distirbution. diff --git a/segmentation/imagej-threshold-rosin-tool/VERSION b/segmentation/imagej-threshold-rosin-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-rosin-tool/VERSION +++ b/segmentation/imagej-threshold-rosin-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-rosin-tool/plugin.json b/segmentation/imagej-threshold-rosin-tool/plugin.json index a08a726ba..0a0b62ef1 100644 --- a/segmentation/imagej-threshold-rosin-tool/plugin.json +++ b/segmentation/imagej-threshold-rosin-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold rosin", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold rosin", "description": "This plugin implements the rosin thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-rosin-tool:0.5.0", + "containerId": "polusai/imagej-threshold-rosin-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-rosin-tool/pyproject.toml b/segmentation/imagej-threshold-rosin-tool/pyproject.toml index 4d102530f..7109b42f0 100644 --- a/segmentation/imagej-threshold-rosin-tool/pyproject.toml +++ b/segmentation/imagej-threshold-rosin-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-rosin" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-rosin-tool/src/polus/images/segmentation/imagej_threshold_rosin/__init__.py b/segmentation/imagej-threshold-rosin-tool/src/polus/images/segmentation/imagej_threshold_rosin/__init__.py index bc728327a..18d97c546 100644 --- a/segmentation/imagej-threshold-rosin-tool/src/polus/images/segmentation/imagej_threshold_rosin/__init__.py +++ b/segmentation/imagej-threshold-rosin-tool/src/polus/images/segmentation/imagej_threshold_rosin/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold rosin tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-shanbhag-tool/.bumpversion.cfg b/segmentation/imagej-threshold-shanbhag-tool/.bumpversion.cfg index dd73f3a2e..190fe2f19 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-shanbhag-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-shanbhag-tool/README.md b/segmentation/imagej-threshold-shanbhag-tool/README.md index bf90dfc0d..ebd6c8993 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/README.md +++ b/segmentation/imagej-threshold-shanbhag-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold shanbhag (v0.5.0) +# ImageJ threshold shanbhag (v0.5.1-dev0) Implements Shanbhag's extension of Kapur's Renyi Entropy method. This method includes a distance from the threshold in the entropy measure. More information diff --git a/segmentation/imagej-threshold-shanbhag-tool/VERSION b/segmentation/imagej-threshold-shanbhag-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/VERSION +++ b/segmentation/imagej-threshold-shanbhag-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-shanbhag-tool/plugin.json b/segmentation/imagej-threshold-shanbhag-tool/plugin.json index 391d4f6a3..f778e3314 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/plugin.json +++ b/segmentation/imagej-threshold-shanbhag-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold shanbhag", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold shanbhag", "description": "This plugin implements the shanbhag thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-shanbhag-tool:0.5.0", + "containerId": "polusai/imagej-threshold-shanbhag-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-shanbhag-tool/pyproject.toml b/segmentation/imagej-threshold-shanbhag-tool/pyproject.toml index 374bca6d6..2500046f9 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/pyproject.toml +++ b/segmentation/imagej-threshold-shanbhag-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-shanbhag" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-shanbhag-tool/src/polus/images/segmentation/imagej_threshold_shanbhag/__init__.py b/segmentation/imagej-threshold-shanbhag-tool/src/polus/images/segmentation/imagej_threshold_shanbhag/__init__.py index 3aba55fad..e00029048 100644 --- a/segmentation/imagej-threshold-shanbhag-tool/src/polus/images/segmentation/imagej_threshold_shanbhag/__init__.py +++ b/segmentation/imagej-threshold-shanbhag-tool/src/polus/images/segmentation/imagej_threshold_shanbhag/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold shanbhag tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-triangle-tool/.bumpversion.cfg b/segmentation/imagej-threshold-triangle-tool/.bumpversion.cfg index bd004ad1b..736e08352 100644 --- a/segmentation/imagej-threshold-triangle-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-triangle-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-triangle-tool/README.md b/segmentation/imagej-threshold-triangle-tool/README.md index 65053edd3..370a9aa54 100644 --- a/segmentation/imagej-threshold-triangle-tool/README.md +++ b/segmentation/imagej-threshold-triangle-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold triangle (v0.5.0) +# ImageJ threshold triangle (v0.5.1-dev0) This plugin implements the triangle threshold method. As described by [ImageJ](https://imagej.net/plugins/auto-threshold#triangle) the Triangle algorithm, a geometric method, cannot tell whether the data is diff --git a/segmentation/imagej-threshold-triangle-tool/VERSION b/segmentation/imagej-threshold-triangle-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-triangle-tool/VERSION +++ b/segmentation/imagej-threshold-triangle-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-triangle-tool/plugin.json b/segmentation/imagej-threshold-triangle-tool/plugin.json index ab657b118..435ea7f25 100644 --- a/segmentation/imagej-threshold-triangle-tool/plugin.json +++ b/segmentation/imagej-threshold-triangle-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold triangle", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold triangle", "description": "This plugin implements the triangle thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-triangle-tool:0.5.0", + "containerId": "polusai/imagej-threshold-triangle-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-triangle-tool/pyproject.toml b/segmentation/imagej-threshold-triangle-tool/pyproject.toml index 8a30a441d..a784e5d89 100644 --- a/segmentation/imagej-threshold-triangle-tool/pyproject.toml +++ b/segmentation/imagej-threshold-triangle-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-triangle" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-triangle-tool/src/polus/images/segmentation/imagej_threshold_triangle/__init__.py b/segmentation/imagej-threshold-triangle-tool/src/polus/images/segmentation/imagej_threshold_triangle/__init__.py index 9bfcc6e00..d6cdf9cf6 100644 --- a/segmentation/imagej-threshold-triangle-tool/src/polus/images/segmentation/imagej_threshold_triangle/__init__.py +++ b/segmentation/imagej-threshold-triangle-tool/src/polus/images/segmentation/imagej_threshold_triangle/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold triangle tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/segmentation/imagej-threshold-yen-tool/.bumpversion.cfg b/segmentation/imagej-threshold-yen-tool/.bumpversion.cfg index ca8fdc366..11bc7201a 100644 --- a/segmentation/imagej-threshold-yen-tool/.bumpversion.cfg +++ b/segmentation/imagej-threshold-yen-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/segmentation/imagej-threshold-yen-tool/README.md b/segmentation/imagej-threshold-yen-tool/README.md index 5d73dd467..62f18e620 100644 --- a/segmentation/imagej-threshold-yen-tool/README.md +++ b/segmentation/imagej-threshold-yen-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ threshold yen (v0.5.0) +# ImageJ threshold yen (v0.5.1-dev0) Applies Yen's threshold method to an input collection as described by [ImageJ](https://imagej.net/plugins/auto-threshold#yen). diff --git a/segmentation/imagej-threshold-yen-tool/VERSION b/segmentation/imagej-threshold-yen-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/segmentation/imagej-threshold-yen-tool/VERSION +++ b/segmentation/imagej-threshold-yen-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/segmentation/imagej-threshold-yen-tool/plugin.json b/segmentation/imagej-threshold-yen-tool/plugin.json index 6f1f65230..696808730 100644 --- a/segmentation/imagej-threshold-yen-tool/plugin.json +++ b/segmentation/imagej-threshold-yen-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ threshold yen", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ threshold yen", "description": "This plugin implements the yen thresholding operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-threshold-yen-tool:0.5.0", + "containerId": "polusai/imagej-threshold-yen-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/segmentation/imagej-threshold-yen-tool/pyproject.toml b/segmentation/imagej-threshold-yen-tool/pyproject.toml index 197d73e60..28e16cb90 100644 --- a/segmentation/imagej-threshold-yen-tool/pyproject.toml +++ b/segmentation/imagej-threshold-yen-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-segmentation-imagej-threshold-yen" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/segmentation/imagej-threshold-yen-tool/src/polus/images/segmentation/imagej_threshold_yen/__init__.py b/segmentation/imagej-threshold-yen-tool/src/polus/images/segmentation/imagej_threshold_yen/__init__.py index 04ea17fce..89c464607 100644 --- a/segmentation/imagej-threshold-yen-tool/src/polus/images/segmentation/imagej_threshold_yen/__init__.py +++ b/segmentation/imagej-threshold-yen-tool/src/polus/images/segmentation/imagej_threshold_yen/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold yen tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/.bumpversion.cfg b/transforms/imagej-deconvolve-richardsonlucy-tool/.bumpversion.cfg index 6304823d3..da7ebbf89 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/.bumpversion.cfg +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/README.md b/transforms/imagej-deconvolve-richardsonlucy-tool/README.md index a0fcb94d8..073b2dcfe 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/README.md +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ deconvolve richardsonlucy v(0.5.0) +# ImageJ deconvolve richardsonlucy v(0.5.1-dev0) This plugin applies the [Richardson-Lucy Deconvolution](https://en.wikipedia.org/wiki/Richardson%E2%80%93Lucy_deconvolution) to input collection. This is an iterative process that can recover an underlying blurred image if the psf diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/VERSION b/transforms/imagej-deconvolve-richardsonlucy-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/VERSION +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/plugin.json b/transforms/imagej-deconvolve-richardsonlucy-tool/plugin.json index 625e2d831..aa356ffbd 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/plugin.json +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ deconvolve richardsonlucy", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ deconvolve richardsonlucy", "description": "This plugin implements the deconvolve richardsonlucy operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-deconvolve-richardsonlucy-tool:0.5.0", + "containerId": "polusai/imagej-deconvolve-richardsonlucy-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/pyproject.toml b/transforms/imagej-deconvolve-richardsonlucy-tool/pyproject.toml index 2bb0e4cd1..2c296076e 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/pyproject.toml +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-deconvolve-richardsonlucy" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-deconvolve-richardsonlucy-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucy/__init__.py b/transforms/imagej-deconvolve-richardsonlucy-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucy/__init__.py index 7e7a7c519..dd1fbffd3 100644 --- a/transforms/imagej-deconvolve-richardsonlucy-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucy/__init__.py +++ b/transforms/imagej-deconvolve-richardsonlucy-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucy/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold yen tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/.bumpversion.cfg b/transforms/imagej-deconvolve-richardsonlucytv-tool/.bumpversion.cfg index fd26c3bd7..136388587 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/.bumpversion.cfg +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/README.md b/transforms/imagej-deconvolve-richardsonlucytv-tool/README.md index 31eacfa22..7ddd3c541 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/README.md +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ deconvolve richardsonlucytv v(0.5.0) +# ImageJ deconvolve richardsonlucytv v(0.5.1-dev0) This plugin applies the [Richardson-Lucy Deconvolution](https://en.wikipedia.org/wiki/Richardson%E2%80%93Lucy_deconvolution) to input collection with a total variation regularization factor as described in (Richardson-Lucy diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/VERSION b/transforms/imagej-deconvolve-richardsonlucytv-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/VERSION +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/plugin.json b/transforms/imagej-deconvolve-richardsonlucytv-tool/plugin.json index 4dacad5eb..158c93a74 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/plugin.json +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ deconvolve richardsonlucytv", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ deconvolve richardsonlucytv", "description": "This plugin implements the deconvolve richardsonlucytv operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-deconvolve-richardsonlucytv-tool:0.5.0", + "containerId": "polusai/imagej-deconvolve-richardsonlucytv-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/pyproject.toml b/transforms/imagej-deconvolve-richardsonlucytv-tool/pyproject.toml index 1479aad6a..c6c1b911e 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/pyproject.toml +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-deconvolve-richardsonlucytv" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-deconvolve-richardsonlucytv-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucytv/__init__.py b/transforms/imagej-deconvolve-richardsonlucytv-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucytv/__init__.py index 6935854ce..7b7392eb4 100644 --- a/transforms/imagej-deconvolve-richardsonlucytv-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucytv/__init__.py +++ b/transforms/imagej-deconvolve-richardsonlucytv-tool/src/polus/images/transforms/imagej_deconvolve_richardsonlucytv/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ Threshold yen tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-addpoissonnoise-tool/.bumpversion.cfg b/transforms/imagej-filter-addpoissonnoise-tool/.bumpversion.cfg index 9ebdfc928..6955096c7 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-addpoissonnoise-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-addpoissonnoise-tool/README.md b/transforms/imagej-filter-addpoissonnoise-tool/README.md index 80fba7465..8ac505071 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/README.md +++ b/transforms/imagej-filter-addpoissonnoise-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter addpoissonnoise v(0.5.0) +# ImageJ filter addpoissonnoise v(0.5.1-dev0) This plugin adds noise of a [Poisson](https://en.wikipedia.org/wiki/Poisson_distribution) distribution to an input image using the implementation in D. E. Knuth. Art of Computer Programming, Volume 2: diff --git a/transforms/imagej-filter-addpoissonnoise-tool/VERSION b/transforms/imagej-filter-addpoissonnoise-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/VERSION +++ b/transforms/imagej-filter-addpoissonnoise-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-addpoissonnoise-tool/plugin.json b/transforms/imagej-filter-addpoissonnoise-tool/plugin.json index 7e5caa9fd..b899c790b 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/plugin.json +++ b/transforms/imagej-filter-addpoissonnoise-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter addpoissonnoise", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter addpoissonnoise", "description": "This plugin implements the filter addpoissonnoise operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-addpoissonnoise-tool:0.5.0", + "containerId": "polusai/imagej-filter-addpoissonnoise-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-addpoissonnoise-tool/pyproject.toml b/transforms/imagej-filter-addpoissonnoise-tool/pyproject.toml index 811c41044..b52e1066b 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/pyproject.toml +++ b/transforms/imagej-filter-addpoissonnoise-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-addpoissonnoise" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-addpoissonnoise-tool/src/polus/images/transforms/imagej_filter_addpoissonnoise/__init__.py b/transforms/imagej-filter-addpoissonnoise-tool/src/polus/images/transforms/imagej_filter_addpoissonnoise/__init__.py index a7c21efa9..f6178c317 100644 --- a/transforms/imagej-filter-addpoissonnoise-tool/src/polus/images/transforms/imagej_filter_addpoissonnoise/__init__.py +++ b/transforms/imagej-filter-addpoissonnoise-tool/src/polus/images/transforms/imagej_filter_addpoissonnoise/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter addpoissonnoise tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-convolve-tool/.bumpversion.cfg b/transforms/imagej-filter-convolve-tool/.bumpversion.cfg index 2766d45f8..5fbbaedf0 100644 --- a/transforms/imagej-filter-convolve-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-convolve-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-convolve-tool/README.md b/transforms/imagej-filter-convolve-tool/README.md index d71abf929..f6397d00a 100644 --- a/transforms/imagej-filter-convolve-tool/README.md +++ b/transforms/imagej-filter-convolve-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter convolve v(0.5.0) +# ImageJ filter convolve v(0.5.1-dev0) This plugin performs a [convolution](https://en.wikipedia.org/wiki/Convolution) operation using a user specified kernel to an input collection. diff --git a/transforms/imagej-filter-convolve-tool/VERSION b/transforms/imagej-filter-convolve-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-convolve-tool/VERSION +++ b/transforms/imagej-filter-convolve-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-convolve-tool/plugin.json b/transforms/imagej-filter-convolve-tool/plugin.json index d467fb433..6fb5e126e 100644 --- a/transforms/imagej-filter-convolve-tool/plugin.json +++ b/transforms/imagej-filter-convolve-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter convolve", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter convolve", "description": "This plugin implements the filter convolve operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-convolve-tool:0.5.0", + "containerId": "polusai/imagej-filter-convolve-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-convolve-tool/pyproject.toml b/transforms/imagej-filter-convolve-tool/pyproject.toml index aa1bffa72..f35d144a7 100644 --- a/transforms/imagej-filter-convolve-tool/pyproject.toml +++ b/transforms/imagej-filter-convolve-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-convolve" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-convolve-tool/src/polus/images/transforms/imagej_filter_convolve/__init__.py b/transforms/imagej-filter-convolve-tool/src/polus/images/transforms/imagej_filter_convolve/__init__.py index ac5c1e057..0f3f300c2 100644 --- a/transforms/imagej-filter-convolve-tool/src/polus/images/transforms/imagej_filter_convolve/__init__.py +++ b/transforms/imagej-filter-convolve-tool/src/polus/images/transforms/imagej_filter_convolve/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter convolve tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-correlate-tool/.bumpversion.cfg b/transforms/imagej-filter-correlate-tool/.bumpversion.cfg index d38bcc933..f1e961ca6 100644 --- a/transforms/imagej-filter-correlate-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-correlate-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-correlate-tool/README.md b/transforms/imagej-filter-correlate-tool/README.md index 543dc3b29..fe5588a01 100644 --- a/transforms/imagej-filter-correlate-tool/README.md +++ b/transforms/imagej-filter-correlate-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter correlate v(0.5.0) +# ImageJ filter correlate v(0.5.1-dev0) The plugin applies a correlation operation to an input image with a user specified kernel. A correlation operation is similar to a diff --git a/transforms/imagej-filter-correlate-tool/VERSION b/transforms/imagej-filter-correlate-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-correlate-tool/VERSION +++ b/transforms/imagej-filter-correlate-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-correlate-tool/plugin.json b/transforms/imagej-filter-correlate-tool/plugin.json index 4951f73d5..8497a37b9 100644 --- a/transforms/imagej-filter-correlate-tool/plugin.json +++ b/transforms/imagej-filter-correlate-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter correlate", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter correlate", "description": "This plugin implements the filter correlate operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-correlate-tool:0.5.0", + "containerId": "polusai/imagej-filter-correlate-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-correlate-tool/pyproject.toml b/transforms/imagej-filter-correlate-tool/pyproject.toml index 3bf6a5f3b..222bc32d4 100644 --- a/transforms/imagej-filter-correlate-tool/pyproject.toml +++ b/transforms/imagej-filter-correlate-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-correlate" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-correlate-tool/src/polus/images/transforms/imagej_filter_correlate/__init__.py b/transforms/imagej-filter-correlate-tool/src/polus/images/transforms/imagej_filter_correlate/__init__.py index f6aeed850..fc963de10 100644 --- a/transforms/imagej-filter-correlate-tool/src/polus/images/transforms/imagej_filter_correlate/__init__.py +++ b/transforms/imagej-filter-correlate-tool/src/polus/images/transforms/imagej_filter_correlate/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter correlate tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-derivativegauss-tool/.bumpversion.cfg b/transforms/imagej-filter-derivativegauss-tool/.bumpversion.cfg index 228bb71d0..e39517072 100644 --- a/transforms/imagej-filter-derivativegauss-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-derivativegauss-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-derivativegauss-tool/README.md b/transforms/imagej-filter-derivativegauss-tool/README.md index e56804500..e9c2f9c9d 100644 --- a/transforms/imagej-filter-derivativegauss-tool/README.md +++ b/transforms/imagej-filter-derivativegauss-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter derivativegauss v(0.5.0) +# ImageJ filter derivativegauss v(0.5.1-dev0) This plugin applies the nth derivative of a Gaussian to an input collection. The plugin takes as input the standard deviations of the 2-Dimensional Gaussian for diff --git a/transforms/imagej-filter-derivativegauss-tool/VERSION b/transforms/imagej-filter-derivativegauss-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-derivativegauss-tool/VERSION +++ b/transforms/imagej-filter-derivativegauss-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-derivativegauss-tool/plugin.json b/transforms/imagej-filter-derivativegauss-tool/plugin.json index c42a5ec5a..ed8c8bbb3 100644 --- a/transforms/imagej-filter-derivativegauss-tool/plugin.json +++ b/transforms/imagej-filter-derivativegauss-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter derivativegauss", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter derivativegauss", "description": "This plugin implements the filter derivativegauss operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-derivativegauss-tool:0.5.0", + "containerId": "polusai/imagej-filter-derivativegauss-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-derivativegauss-tool/pyproject.toml b/transforms/imagej-filter-derivativegauss-tool/pyproject.toml index 4e766003a..a45e1b31f 100644 --- a/transforms/imagej-filter-derivativegauss-tool/pyproject.toml +++ b/transforms/imagej-filter-derivativegauss-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-derivativegauss" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-derivativegauss-tool/src/polus/images/transforms/imagej_filter_derivativegauss/__init__.py b/transforms/imagej-filter-derivativegauss-tool/src/polus/images/transforms/imagej_filter_derivativegauss/__init__.py index 28b5e0d0c..2607e7b85 100644 --- a/transforms/imagej-filter-derivativegauss-tool/src/polus/images/transforms/imagej_filter_derivativegauss/__init__.py +++ b/transforms/imagej-filter-derivativegauss-tool/src/polus/images/transforms/imagej_filter_derivativegauss/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter derivativegauss tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-dog-tool/.bumpversion.cfg b/transforms/imagej-filter-dog-tool/.bumpversion.cfg index d0cf0f411..4bf4ed7f1 100644 --- a/transforms/imagej-filter-dog-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-dog-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-dog-tool/README.md b/transforms/imagej-filter-dog-tool/README.md index 47db96457..b29dc3571 100644 --- a/transforms/imagej-filter-dog-tool/README.md +++ b/transforms/imagej-filter-dog-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter dog v(0.5.0) +# ImageJ filter dog v(0.5.1-dev0) This plugin applies the Difference of Gaussians algorithm to an input collection. The [DoG algorithm](https://en.wikipedia.org/wiki/Difference_of_Gaussians) involves blurring the input image with with two separate diff --git a/transforms/imagej-filter-dog-tool/VERSION b/transforms/imagej-filter-dog-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-dog-tool/VERSION +++ b/transforms/imagej-filter-dog-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-dog-tool/plugin.json b/transforms/imagej-filter-dog-tool/plugin.json index 2cb61e189..199dcdd0d 100644 --- a/transforms/imagej-filter-dog-tool/plugin.json +++ b/transforms/imagej-filter-dog-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter dog", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter dog", "description": "This plugin implements the filter dog operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-dog-tool:0.5.0", + "containerId": "polusai/imagej-filter-dog-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-dog-tool/pyproject.toml b/transforms/imagej-filter-dog-tool/pyproject.toml index 4af570ee9..6ac952c29 100644 --- a/transforms/imagej-filter-dog-tool/pyproject.toml +++ b/transforms/imagej-filter-dog-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-dog" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-dog-tool/src/polus/images/transforms/imagej_filter_dog/__init__.py b/transforms/imagej-filter-dog-tool/src/polus/images/transforms/imagej_filter_dog/__init__.py index 8208d6180..5cd67ac10 100644 --- a/transforms/imagej-filter-dog-tool/src/polus/images/transforms/imagej_filter_dog/__init__.py +++ b/transforms/imagej-filter-dog-tool/src/polus/images/transforms/imagej_filter_dog/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter dog tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-frangivesselness-tool/.bumpversion.cfg b/transforms/imagej-filter-frangivesselness-tool/.bumpversion.cfg index af3e3522b..d595bf530 100644 --- a/transforms/imagej-filter-frangivesselness-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-frangivesselness-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-frangivesselness-tool/README.md b/transforms/imagej-filter-frangivesselness-tool/README.md index 702e98e88..9a23024d0 100644 --- a/transforms/imagej-filter-frangivesselness-tool/README.md +++ b/transforms/imagej-filter-frangivesselness-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter frangivesselness v(0.5.0) +# ImageJ filter frangivesselness v(0.5.1-dev0) Applies the Frangi Vesselness filter to an input collection to highlight vessel-like structures. diff --git a/transforms/imagej-filter-frangivesselness-tool/VERSION b/transforms/imagej-filter-frangivesselness-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-frangivesselness-tool/VERSION +++ b/transforms/imagej-filter-frangivesselness-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-frangivesselness-tool/plugin.json b/transforms/imagej-filter-frangivesselness-tool/plugin.json index b2f9f0feb..6667d2a04 100644 --- a/transforms/imagej-filter-frangivesselness-tool/plugin.json +++ b/transforms/imagej-filter-frangivesselness-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter frangivesselness", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter frangivesselness", "description": "This plugin implements the filter frangivesselness operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-frangivesselness-tool:0.5.0", + "containerId": "polusai/imagej-filter-frangivesselness-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-frangivesselness-tool/pyproject.toml b/transforms/imagej-filter-frangivesselness-tool/pyproject.toml index 9fef49c38..315efae1d 100644 --- a/transforms/imagej-filter-frangivesselness-tool/pyproject.toml +++ b/transforms/imagej-filter-frangivesselness-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-frangivesselness" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-frangivesselness-tool/src/polus/images/transforms/imagej_filter_frangivesselness/__init__.py b/transforms/imagej-filter-frangivesselness-tool/src/polus/images/transforms/imagej_filter_frangivesselness/__init__.py index 4bfdd57e9..679c9dcad 100644 --- a/transforms/imagej-filter-frangivesselness-tool/src/polus/images/transforms/imagej_filter_frangivesselness/__init__.py +++ b/transforms/imagej-filter-frangivesselness-tool/src/polus/images/transforms/imagej_filter_frangivesselness/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter frangivesselness tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-gauss-tool/.bumpversion.cfg b/transforms/imagej-filter-gauss-tool/.bumpversion.cfg index e60e39ed8..c4336e843 100644 --- a/transforms/imagej-filter-gauss-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-gauss-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-gauss-tool/README.md b/transforms/imagej-filter-gauss-tool/README.md index ecf5e7049..a51d196b4 100644 --- a/transforms/imagej-filter-gauss-tool/README.md +++ b/transforms/imagej-filter-gauss-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter gauss v(0.5.0) +# ImageJ filter gauss v(0.5.1-dev0) This plugin applies a Gaussian Convolutional filter to an input collection. diff --git a/transforms/imagej-filter-gauss-tool/VERSION b/transforms/imagej-filter-gauss-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-gauss-tool/VERSION +++ b/transforms/imagej-filter-gauss-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-gauss-tool/plugin.json b/transforms/imagej-filter-gauss-tool/plugin.json index 46c59fc4f..71fbeefd1 100644 --- a/transforms/imagej-filter-gauss-tool/plugin.json +++ b/transforms/imagej-filter-gauss-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter gauss", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter gauss", "description": "This plugin implements the filter gauss operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-gauss-tool:0.5.0", + "containerId": "polusai/imagej-filter-gauss-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-gauss-tool/pyproject.toml b/transforms/imagej-filter-gauss-tool/pyproject.toml index cab7f40a1..2b23a9b14 100644 --- a/transforms/imagej-filter-gauss-tool/pyproject.toml +++ b/transforms/imagej-filter-gauss-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-gauss" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-gauss-tool/src/polus/images/transforms/imagej_filter_gauss/__init__.py b/transforms/imagej-filter-gauss-tool/src/polus/images/transforms/imagej_filter_gauss/__init__.py index 97ea70e7b..1ed486ef6 100644 --- a/transforms/imagej-filter-gauss-tool/src/polus/images/transforms/imagej_filter_gauss/__init__.py +++ b/transforms/imagej-filter-gauss-tool/src/polus/images/transforms/imagej_filter_gauss/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter gauss tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-partialderivative-tool/.bumpversion.cfg b/transforms/imagej-filter-partialderivative-tool/.bumpversion.cfg index 0cfdde186..9d273eabb 100644 --- a/transforms/imagej-filter-partialderivative-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-partialderivative-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-partialderivative-tool/README.md b/transforms/imagej-filter-partialderivative-tool/README.md index d5bc1e0bd..d79e2b71d 100644 --- a/transforms/imagej-filter-partialderivative-tool/README.md +++ b/transforms/imagej-filter-partialderivative-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter partialderivative v(0.5.0) +# ImageJ filter partialderivative v(0.5.1-dev0) ImageJ op that applies partial derivative filter to input collection. diff --git a/transforms/imagej-filter-partialderivative-tool/VERSION b/transforms/imagej-filter-partialderivative-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-partialderivative-tool/VERSION +++ b/transforms/imagej-filter-partialderivative-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-partialderivative-tool/plugin.json b/transforms/imagej-filter-partialderivative-tool/plugin.json index b83a51a6c..02845bdc2 100644 --- a/transforms/imagej-filter-partialderivative-tool/plugin.json +++ b/transforms/imagej-filter-partialderivative-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter partialderivative", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter partialderivative", "description": "This plugin implements the filter partialderivative operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-partialderivative-tool:0.5.0", + "containerId": "polusai/imagej-filter-partialderivative-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-partialderivative-tool/pyproject.toml b/transforms/imagej-filter-partialderivative-tool/pyproject.toml index d639ea95e..072bc7872 100644 --- a/transforms/imagej-filter-partialderivative-tool/pyproject.toml +++ b/transforms/imagej-filter-partialderivative-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-partialderivative" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-partialderivative-tool/src/polus/images/transforms/imagej_filter_partialderivative/__init__.py b/transforms/imagej-filter-partialderivative-tool/src/polus/images/transforms/imagej_filter_partialderivative/__init__.py index 2322f71e5..2d5e8cb06 100644 --- a/transforms/imagej-filter-partialderivative-tool/src/polus/images/transforms/imagej_filter_partialderivative/__init__.py +++ b/transforms/imagej-filter-partialderivative-tool/src/polus/images/transforms/imagej_filter_partialderivative/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter partialderivative tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-sobel-tool/.bumpversion.cfg b/transforms/imagej-filter-sobel-tool/.bumpversion.cfg index a698372f7..655428d8a 100644 --- a/transforms/imagej-filter-sobel-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-sobel-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-sobel-tool/README.md b/transforms/imagej-filter-sobel-tool/README.md index 314f11419..dac3f1789 100644 --- a/transforms/imagej-filter-sobel-tool/README.md +++ b/transforms/imagej-filter-sobel-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter sobel v(0.5.0) +# ImageJ filter sobel v(0.5.1-dev0) This plugin applies the Sobel operator to an input collection diff --git a/transforms/imagej-filter-sobel-tool/VERSION b/transforms/imagej-filter-sobel-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-sobel-tool/VERSION +++ b/transforms/imagej-filter-sobel-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-sobel-tool/plugin.json b/transforms/imagej-filter-sobel-tool/plugin.json index 7989b03a3..9e0688dd9 100644 --- a/transforms/imagej-filter-sobel-tool/plugin.json +++ b/transforms/imagej-filter-sobel-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter sobel", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter sobel", "description": "This plugin implements the filter sobel operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-sobel-tool:0.5.0", + "containerId": "polusai/imagej-filter-sobel-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-sobel-tool/pyproject.toml b/transforms/imagej-filter-sobel-tool/pyproject.toml index 07943290b..27f54e69e 100644 --- a/transforms/imagej-filter-sobel-tool/pyproject.toml +++ b/transforms/imagej-filter-sobel-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-sobel" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-sobel-tool/src/polus/images/transforms/imagej_filter_sobel/__init__.py b/transforms/imagej-filter-sobel-tool/src/polus/images/transforms/imagej_filter_sobel/__init__.py index 04718fe8d..f1902ebda 100644 --- a/transforms/imagej-filter-sobel-tool/src/polus/images/transforms/imagej_filter_sobel/__init__.py +++ b/transforms/imagej-filter-sobel-tool/src/polus/images/transforms/imagej_filter_sobel/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter sobel tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-filter-tubeness-tool/.bumpversion.cfg b/transforms/imagej-filter-tubeness-tool/.bumpversion.cfg index b02f49787..9fda7ca78 100644 --- a/transforms/imagej-filter-tubeness-tool/.bumpversion.cfg +++ b/transforms/imagej-filter-tubeness-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-filter-tubeness-tool/README.md b/transforms/imagej-filter-tubeness-tool/README.md index 89235dbaf..fa7a1831b 100644 --- a/transforms/imagej-filter-tubeness-tool/README.md +++ b/transforms/imagej-filter-tubeness-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ filter tubeness v(0.5.0) +# ImageJ filter tubeness v(0.5.1-dev0) This plugin filters a collection to produce a score for how tube-like each point in the image is. diff --git a/transforms/imagej-filter-tubeness-tool/VERSION b/transforms/imagej-filter-tubeness-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-filter-tubeness-tool/VERSION +++ b/transforms/imagej-filter-tubeness-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-filter-tubeness-tool/plugin.json b/transforms/imagej-filter-tubeness-tool/plugin.json index e11cd0d09..97c936b86 100644 --- a/transforms/imagej-filter-tubeness-tool/plugin.json +++ b/transforms/imagej-filter-tubeness-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ filter tubeness", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ filter tubeness", "description": "This plugin implements the filter tubeness operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-filter-tubeness-tool:0.5.0", + "containerId": "polusai/imagej-filter-tubeness-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-filter-tubeness-tool/pyproject.toml b/transforms/imagej-filter-tubeness-tool/pyproject.toml index d030a5870..a04e2e10a 100644 --- a/transforms/imagej-filter-tubeness-tool/pyproject.toml +++ b/transforms/imagej-filter-tubeness-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-filter-tubeness" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-filter-tubeness-tool/src/polus/images/transforms/imagej_filter_tubeness/__init__.py b/transforms/imagej-filter-tubeness-tool/src/polus/images/transforms/imagej_filter_tubeness/__init__.py index 2a9b6c31e..3b4c977f8 100644 --- a/transforms/imagej-filter-tubeness-tool/src/polus/images/transforms/imagej_filter_tubeness/__init__.py +++ b/transforms/imagej-filter-tubeness-tool/src/polus/images/transforms/imagej_filter_tubeness/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ filter tubeness tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-image-integral-tool/.bumpversion.cfg b/transforms/imagej-image-integral-tool/.bumpversion.cfg index f0e552631..83c582a15 100644 --- a/transforms/imagej-image-integral-tool/.bumpversion.cfg +++ b/transforms/imagej-image-integral-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-image-integral-tool/README.md b/transforms/imagej-image-integral-tool/README.md index abff0edb6..99bdcbd53 100644 --- a/transforms/imagej-image-integral-tool/README.md +++ b/transforms/imagej-image-integral-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ image integral v(0.5.0) +# ImageJ image integral v(0.5.1-dev0) This plugin applies the image integral algorithm to an input collection. The image integral algorithm is also known as a [Summed-area table](https://en.wikipedia.org/wiki/Summed-area_table), where each pixel diff --git a/transforms/imagej-image-integral-tool/VERSION b/transforms/imagej-image-integral-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-image-integral-tool/VERSION +++ b/transforms/imagej-image-integral-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-image-integral-tool/plugin.json b/transforms/imagej-image-integral-tool/plugin.json index 301e483ae..64d1f8358 100644 --- a/transforms/imagej-image-integral-tool/plugin.json +++ b/transforms/imagej-image-integral-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ image integral", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ image integral", "description": "This plugin implements the image integral operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-image-integral-tool:0.5.0", + "containerId": "polusai/imagej-image-integral-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-image-integral-tool/pyproject.toml b/transforms/imagej-image-integral-tool/pyproject.toml index cf351e024..b11f454ad 100644 --- a/transforms/imagej-image-integral-tool/pyproject.toml +++ b/transforms/imagej-image-integral-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-image-integral" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-image-integral-tool/src/polus/images/transforms/imagej_image_integral/__init__.py b/transforms/imagej-image-integral-tool/src/polus/images/transforms/imagej_image_integral/__init__.py index 542b88917..c01d57f1c 100644 --- a/transforms/imagej-image-integral-tool/src/polus/images/transforms/imagej_image_integral/__init__.py +++ b/transforms/imagej-image-integral-tool/src/polus/images/transforms/imagej_image_integral/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ image integral tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging diff --git a/transforms/imagej-image-invert-tool/.bumpversion.cfg b/transforms/imagej-image-invert-tool/.bumpversion.cfg index 92eea27b3..0d397115b 100644 --- a/transforms/imagej-image-invert-tool/.bumpversion.cfg +++ b/transforms/imagej-image-invert-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.5.0 +current_version = 0.5.1-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/transforms/imagej-image-invert-tool/README.md b/transforms/imagej-image-invert-tool/README.md index 31b287fc1..9275429fe 100644 --- a/transforms/imagej-image-invert-tool/README.md +++ b/transforms/imagej-image-invert-tool/README.md @@ -1,4 +1,4 @@ -# ImageJ image invert v(0.5.0) +# ImageJ image invert v(0.5.1-dev0) This plugin invert the pixels values of the input collection. Where the highest pixel intensities become the lowest and the lowest pixel intensities become the diff --git a/transforms/imagej-image-invert-tool/VERSION b/transforms/imagej-image-invert-tool/VERSION index 8f0916f76..6f9bb2cc0 100644 --- a/transforms/imagej-image-invert-tool/VERSION +++ b/transforms/imagej-image-invert-tool/VERSION @@ -1 +1 @@ -0.5.0 +0.5.1-dev0 diff --git a/transforms/imagej-image-invert-tool/plugin.json b/transforms/imagej-image-invert-tool/plugin.json index 384cc6e9f..0247089f6 100644 --- a/transforms/imagej-image-invert-tool/plugin.json +++ b/transforms/imagej-image-invert-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "ImageJ image invert", - "version": "0.5.0", + "version": "0.5.1-dev0", "title": "ImageJ image invert", "description": "This plugin implements the image invert operation", "author": "Nick Schaub (nick.schaub@nih.gov), Anjali Taneja, Benjamin Houghton (benjamin.houghton@axleinfo.com), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/image-tools", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "", - "containerId": "polusai/imagej-image-invert-tool:0.5.0", + "containerId": "polusai/imagej-image-invert-tool:0.5.1-dev0", "inputs": [ { "name": "inpDir", diff --git a/transforms/imagej-image-invert-tool/pyproject.toml b/transforms/imagej-image-invert-tool/pyproject.toml index 971c65959..9d0e3071e 100644 --- a/transforms/imagej-image-invert-tool/pyproject.toml +++ b/transforms/imagej-image-invert-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-transforms-imagej-image-invert" -version = "0.5.0" +version = "0.5.1-dev0" description = "" authors = [ "Nick Schaub ", diff --git a/transforms/imagej-image-invert-tool/src/polus/images/transforms/imagej_image_invert/__init__.py b/transforms/imagej-image-invert-tool/src/polus/images/transforms/imagej_image_invert/__init__.py index 12cd7bb4c..8736ccdfa 100644 --- a/transforms/imagej-image-invert-tool/src/polus/images/transforms/imagej_image_invert/__init__.py +++ b/transforms/imagej-image-invert-tool/src/polus/images/transforms/imagej_image_invert/__init__.py @@ -1,7 +1,7 @@ """Provides the ImageJ image invert tool.""" -__version__ = "0.5.0" +__version__ = "0.5.1-dev0" import logging