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sequence_locator: "retrieve" gives incorrect regions and region coordinates #20

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kwade4 opened this issue Jul 30, 2019 · 1 comment
Open

sequence_locator: "retrieve" gives incorrect regions and region coordinates #20

kwade4 opened this issue Jul 30, 2019 · 1 comment

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@kwade4
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kwade4 commented Jul 30, 2019

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kwade4 added a commit that referenced this issue Jul 30, 2019
@kwade4
-Fixed bug in retrieve (#8, #20)
f1bf792 
-Updated test case for retrieve
@kwade4 kwade4 mentioned this issue Aug 1, 2019
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@kwade4
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kwade4 commented Aug 1, 2019

retrieve receives local coordinates (relative to the start of the query region) as input and compares these coordinates to coords, which stores global coordinates (relative to the start of the genome).

kwade4 added a commit that referenced this issue Aug 1, 2019
@kwade4
-Refactoring to differentiate between local and global coordinates (#23…
d25bf90 
…, #20)
kwade4 added a commit that referenced this issue Aug 2, 2019
@kwade4
-Updated test cases (#23, #20)
40aa56a 
-Debugging
kwade4 added a commit that referenced this issue Aug 8, 2019
@kwade4
-Code clean up for sequence_locator unit tests
454473c 
-Modifying sequence_locator to store global and local coordinates (#23, #20)
kwade4 added a commit that referenced this issue Aug 9, 2019
@kwade4
-sequence_locator: updating test cases; working on #20, #23
d052fda 
-riplike: modified bootstrapping to use random.choices() (#12)
kwade4 added a commit that referenced this issue Aug 12, 2019
@kwade4
#20, #23 in progress
af7d7a9
kwade4 added a commit that referenced this issue Aug 15, 2019
@kwade4
-#8, #20 in progress
4b58083
kwade4 added a commit that referenced this issue Aug 16, 2019
@kwade4
-Updated test cases and code cleanup (#20 in progress)
e44dd45
kwade4 added a commit that referenced this issue Aug 23, 2019
@kwade4
-Updated test cases and code cleanup (#20 in progress)
9d174db
kwade4 added a commit that referenced this issue Aug 28, 2019
@kwade4
-Working on #20
3793640
kwade4 added a commit that referenced this issue Aug 29, 2019
@kwade4
-Fixing off-by-one bugs #20
73fece5
kwade4 added a commit that referenced this issue Aug 30, 2019
@kwade4
-Fixing protein and nucleotide regions (#20)
dfd871f
kwade4 added a commit that referenced this issue Sep 9, 2019
@kwade4
- Added test cases for relative positions
de9b4f4 
- #20 in progress
kwade4 added a commit that referenced this issue Oct 7, 2019
@kwade4
-Refactoring find_overlaps (#20 in progress)
c832001
kwade4 added a commit that referenced this issue Oct 10, 2019
@kwade4
-Updated test cases
cda6703 
-Refactoring relative positions (#20 in progress)
kwade4 added a commit that referenced this issue Nov 15, 2019
@kwade4
-Refactoring to address incorrect coordinates (#20)
9a791b5 
-Modified to be more cohesive and object-oriented (in progress)
kwade4 added a commit that referenced this issue Dec 12, 2019
@kwade4
-Refactoring and fixing off-by-one errors (#20)
e4af71b
kwade4 added a commit that referenced this issue Mar 17, 2020
@kwade4
-Working on region coordinates (#20)
d8282b8
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