diff --git a/INSTALL.md b/INSTALL.md index df636fe..f771a38 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -5,7 +5,7 @@ * [mpi4py](https://pypi.org/project/mpi4py/) * [SciPy](https://www.scipy.org/) version 1.5+ * [rpy2](https://rpy2.github.io/doc/latest/html/index.html) version 3.5.13+ - * [psycopg2](https://pypi.org/project/psycopg2/) version 2.9.6+ + * [psycopg2](https://pypi.org/project/psycopg2/) version 2.9.6+ (requires `postgresql-devel`/`libpq5`) * [minimap2](https://github.com/lh3/minimap2) version 2.1+ * [FastTree2](http://www.microbesonline.org/fasttree/) version 2.1.10+, compiled for [double precision](http://www.microbesonline.org/fasttree/#BranchLen) * [TreeTime](https://github.com/neherlab/treetime) version 0.7.5+ @@ -132,4 +132,4 @@ npm test and in a new terminal terminal window run ``` npx cypress run --config-file "config/cypress.config.js" -``` \ No newline at end of file +``` diff --git a/package-lock.json b/package-lock.json index 8b83ca2..b2b7ce3 100644 --- a/package-lock.json +++ b/package-lock.json @@ -11,10 +11,9 @@ "dependencies": { "compression": "^1.7.4", "dotenv": "^16.0.1", - "express": "^4.19.2", + "express": "^4.21.0", "fs": "^0.0.1-security", "http": "^0.0.1-security", - "https": "^1.0.0", "mongodb": "^5.8.0" }, "devDependencies": { @@ -362,9 +361,9 @@ "dev": true }, "node_modules/body-parser": { - "version": "1.20.2", - "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.2.tgz", - "integrity": "sha512-ml9pReCu3M61kGlqoTm2umSXTlRTuGTx0bfYj+uIUKKYycG5NtSbeetV3faSU6R7ajOPw0g/J1PvK4qNy7s5bA==", + "version": "1.20.3", + "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.3.tgz", + "integrity": "sha512-7rAxByjUMqQ3/bHJy7D6OGXvx/MMc4IqBn/X0fcM1QUcAItpZrBEYhWGem+tzXH90c+G01ypMcYJBO9Y30203g==", "dependencies": { "bytes": "3.1.2", "content-type": "~1.0.5", @@ -374,7 +373,7 @@ "http-errors": "2.0.0", "iconv-lite": "0.4.24", "on-finished": "2.4.1", - "qs": "6.11.0", + "qs": "6.13.0", "raw-body": "2.5.2", "type-is": "~1.6.18", "unpipe": "1.0.0" @@ -461,12 +460,18 @@ } }, "node_modules/call-bind": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz", - "integrity": "sha512-7O+FbCihrB5WGbFYesctwmTKae6rOiIzmz1icreWJ+0aA7LJfuqhEso2T9ncpcFtzMQtzXf2QGGueWJGTYsqrA==", + "version": "1.0.7", + "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.7.tgz", + "integrity": "sha512-GHTSNSYICQ7scH7sZ+M2rFopRoLh8t2bLSW6BbgrtLsahOIB5iyAVJf9GjWK3cYTDaMj4XdBpM1cA6pIS0Kv2w==", "dependencies": { - "function-bind": "^1.1.1", - "get-intrinsic": "^1.0.2" + "es-define-property": "^1.0.0", + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "get-intrinsic": "^1.2.4", + "set-function-length": "^1.2.1" + }, + "engines": { + "node": ">= 0.4" }, "funding": { "url": "https://github.com/sponsors/ljharb" @@ -842,6 +847,22 @@ "ms": "2.0.0" } }, + "node_modules/define-data-property": { + "version": "1.1.4", + "resolved": "https://registry.npmjs.org/define-data-property/-/define-data-property-1.1.4.tgz", + "integrity": "sha512-rBMvIzlpA8v6E+SJZoo++HAYqsLrkg7MSfIinMPFhmkorw7X+dOXVJQs+QT69zGkzMyfDnIMN2Wid1+NbL3T+A==", + "dependencies": { + "es-define-property": "^1.0.0", + "es-errors": "^1.3.0", + "gopd": "^1.0.1" + }, + "engines": { + "node": ">= 0.4" + }, + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, "node_modules/delayed-stream": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/delayed-stream/-/delayed-stream-1.0.0.tgz", @@ -898,9 +919,9 @@ "dev": true }, "node_modules/encodeurl": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", - "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==", + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-2.0.0.tgz", + "integrity": "sha512-Q0n9HRi4m6JuGIV1eFlmvJB7ZEVxu93IrMyiMsGC0lrMJMWzRgx6WGquyfQgZVb31vhGgXnfmPNNXmxnOkRBrg==", "engines": { "node": ">= 0.8" } @@ -926,6 +947,25 @@ "node": ">=8.6" } }, + "node_modules/es-define-property": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/es-define-property/-/es-define-property-1.0.0.tgz", + "integrity": "sha512-jxayLKShrEqqzJ0eumQbVhTYQM27CfT1T35+gCgDFoL82JLsXqTJ76zv6A0YLOgEnLUMvLzsDsGIrl8NFpT2gQ==", + "dependencies": { + "get-intrinsic": "^1.2.4" + }, + "engines": { + "node": ">= 0.4" + } + }, + "node_modules/es-errors": { + "version": "1.3.0", + "resolved": "https://registry.npmjs.org/es-errors/-/es-errors-1.3.0.tgz", + "integrity": "sha512-Zf5H2Kxt2xjTvbJvP2ZWLEICxA6j+hAmMzIlypy4xcBg1vKVnx89Wy0GbS+kf5cwCVFFzdCFh2XSCFNULS6csw==", + "engines": { + "node": ">= 0.4" + } + }, "node_modules/escape-html": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/escape-html/-/escape-html-1.0.3.tgz", @@ -990,36 +1030,36 @@ } }, "node_modules/express": { - "version": "4.19.2", - "resolved": "https://registry.npmjs.org/express/-/express-4.19.2.tgz", - "integrity": "sha512-5T6nhjsT+EOMzuck8JjBHARTHfMht0POzlA60WV2pMD3gyXw2LZnZ+ueGdNxG+0calOJcWKbpFcuzLZ91YWq9Q==", + "version": "4.21.0", + "resolved": "https://registry.npmjs.org/express/-/express-4.21.0.tgz", + "integrity": "sha512-VqcNGcj/Id5ZT1LZ/cfihi3ttTn+NJmkli2eZADigjq29qTlWi/hAQ43t/VLPq8+UX06FCEx3ByOYet6ZFblng==", "dependencies": { "accepts": "~1.3.8", "array-flatten": "1.1.1", - "body-parser": "1.20.2", + "body-parser": "1.20.3", "content-disposition": "0.5.4", "content-type": "~1.0.4", "cookie": "0.6.0", "cookie-signature": "1.0.6", "debug": "2.6.9", "depd": "2.0.0", - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "etag": "~1.8.1", - "finalhandler": "1.2.0", + "finalhandler": "1.3.1", "fresh": "0.5.2", "http-errors": "2.0.0", - "merge-descriptors": "1.0.1", + "merge-descriptors": "1.0.3", "methods": "~1.1.2", "on-finished": "2.4.1", "parseurl": "~1.3.3", - "path-to-regexp": "0.1.7", + "path-to-regexp": "0.1.10", "proxy-addr": "~2.0.7", - "qs": "6.11.0", + "qs": "6.13.0", "range-parser": "~1.2.1", "safe-buffer": "5.2.1", - "send": "0.18.0", - "serve-static": "1.15.0", + "send": "0.19.0", + "serve-static": "1.16.2", "setprototypeof": "1.2.0", "statuses": "2.0.1", "type-is": "~1.6.18", @@ -1132,12 +1172,12 @@ } }, "node_modules/finalhandler": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/finalhandler/-/finalhandler-1.2.0.tgz", - "integrity": "sha512-5uXcUVftlQMFnWC9qu/svkWv3GTd2PfUhK/3PLkYNAe7FbqJMt3515HaxE6eRL74GdsriiwujiawdaB1BpEISg==", + "version": "1.3.1", + "resolved": "https://registry.npmjs.org/finalhandler/-/finalhandler-1.3.1.tgz", + "integrity": "sha512-6BN9trH7bp3qvnrRyzsBz+g3lZxTNZTbVO2EV1CS0WIcDbawYVdYvGflME/9QP0h0pYlCDBCTjYa9nZzMDpyxQ==", "dependencies": { "debug": "2.6.9", - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "on-finished": "2.4.1", "parseurl": "~1.3.3", @@ -1214,18 +1254,26 @@ "dev": true }, "node_modules/function-bind": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/function-bind/-/function-bind-1.1.1.tgz", - "integrity": "sha512-yIovAzMX49sF8Yl58fSCWJ5svSLuaibPxXQJFLmBObTuCr0Mf1KiPopGM9NiFjiYBCbfaa2Fh6breQ6ANVTI0A==" + "version": "1.1.2", + "resolved": "https://registry.npmjs.org/function-bind/-/function-bind-1.1.2.tgz", + "integrity": "sha512-7XHNxH7qX9xG5mIwxkhumTox/MIRNcOgDrxWsMt2pAr23WHp6MrRlN7FBSFpCpr+oVO0F744iUgR82nJMfG2SA==", + "funding": { + "url": "https://github.com/sponsors/ljharb" + } }, "node_modules/get-intrinsic": { - "version": "1.1.3", - "resolved": "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.1.3.tgz", - "integrity": "sha512-QJVz1Tj7MS099PevUG5jvnt9tSkXN8K14dxQlikJuPt4uD9hHAHjLyLBiLR5zELelBdD9QNRAXZzsJx0WaDL9A==", + "version": "1.2.4", + "resolved": "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.2.4.tgz", + "integrity": "sha512-5uYhsJH8VJBTv7oslg4BznJYhDoRI6waYCxMmCdnTrcCrHA/fCFKoTFz2JKKE0HdDFUF7/oQuhzumXJK7paBRQ==", "dependencies": { - "function-bind": "^1.1.1", - "has": "^1.0.3", - "has-symbols": "^1.0.3" + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "has-proto": "^1.0.1", + "has-symbols": "^1.0.3", + "hasown": "^2.0.0" + }, + "engines": { + "node": ">= 0.4" }, "funding": { "url": "https://github.com/sponsors/ljharb" @@ -1299,23 +1347,23 @@ "url": "https://github.com/sponsors/sindresorhus" } }, + "node_modules/gopd": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/gopd/-/gopd-1.0.1.tgz", + "integrity": "sha512-d65bNlIadxvpb/A2abVdlqKqV563juRnZ1Wtk6s1sIR8uNsXR70xqIzVqxVf1eTqDunwT2MkczEeaezCKTZhwA==", + "dependencies": { + "get-intrinsic": "^1.1.3" + }, + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, "node_modules/graceful-fs": { "version": "4.2.10", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.10.tgz", "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA==", "dev": true }, - "node_modules/has": { - "version": "1.0.3", - "resolved": "https://registry.npmjs.org/has/-/has-1.0.3.tgz", - "integrity": "sha512-f2dvO0VU6Oej7RkWJGrehjbzMAjFp5/VKPp5tTpWIV4JHHZK1/BxbFRtf/siA2SWTe09caDmVtYYzWEIbBS4zw==", - "dependencies": { - "function-bind": "^1.1.1" - }, - "engines": { - "node": ">= 0.4.0" - } - }, "node_modules/has-flag": { "version": "4.0.0", "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-4.0.0.tgz", @@ -1325,6 +1373,28 @@ "node": ">=8" } }, + "node_modules/has-property-descriptors": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/has-property-descriptors/-/has-property-descriptors-1.0.2.tgz", + "integrity": "sha512-55JNKuIW+vq4Ke1BjOTjM2YctQIvCT7GFzHwmfZPGo5wnrgkid0YQtnAleFSqumZm4az3n2BS+erby5ipJdgrg==", + "dependencies": { + "es-define-property": "^1.0.0" + }, + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, + "node_modules/has-proto": { + "version": "1.0.3", + "resolved": "https://registry.npmjs.org/has-proto/-/has-proto-1.0.3.tgz", + "integrity": "sha512-SJ1amZAJUiZS+PhsVLf5tGydlaVB8EdFpaSO4gmiUKUOxk8qzn5AIy4ZeJUmh22znIdk/uMAUT2pl3FxzVUH+Q==", + "engines": { + "node": ">= 0.4" + }, + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, "node_modules/has-symbols": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/has-symbols/-/has-symbols-1.0.3.tgz", @@ -1336,6 +1406,17 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/hasown": { + "version": "2.0.2", + "resolved": "https://registry.npmjs.org/hasown/-/hasown-2.0.2.tgz", + "integrity": "sha512-0hJU9SCPvmMzIBdZFqNPXWa6dqh7WdH0cII9y+CyS8rG3nL48Bclra9HmKhVVUHyPWNH5Y7xDwAB7bfgSjkUMQ==", + "dependencies": { + "function-bind": "^1.1.2" + }, + "engines": { + "node": ">= 0.4" + } + }, "node_modules/http": { "version": "0.0.1-security", "resolved": "https://registry.npmjs.org/http/-/http-0.0.1-security.tgz", @@ -1370,11 +1451,6 @@ "node": ">=0.10" } }, - "node_modules/https": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/https/-/https-1.0.0.tgz", - "integrity": "sha512-4EC57ddXrkaF0x83Oj8sM6SLQHAWXw90Skqu2M4AEWENZ3F02dFJE/GARA8igO79tcgYqGrD7ae4f5L3um2lgg==" - }, "node_modules/human-signals": { "version": "1.1.1", "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-1.1.1.tgz", @@ -1734,9 +1810,12 @@ "optional": true }, "node_modules/merge-descriptors": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/merge-descriptors/-/merge-descriptors-1.0.1.tgz", - "integrity": "sha512-cCi6g3/Zr1iqQi6ySbseM1Xvooa98N0w31jzUYrXPX2xqObmFGHJ0tQ5u74H3mVh7wLouTseZyYIq39g8cNp1w==" + "version": "1.0.3", + "resolved": "https://registry.npmjs.org/merge-descriptors/-/merge-descriptors-1.0.3.tgz", + "integrity": "sha512-gaNvAS7TZ897/rVaZ0nMtAyxNyi/pdbjbAwUpFQpN70GqnVfOiXpeUUMKRBmzXaSQ8DdTX4/0ms62r2K+hE6mQ==", + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } }, "node_modules/merge-stream": { "version": "2.0.0", @@ -1887,9 +1966,12 @@ } }, "node_modules/object-inspect": { - "version": "1.12.2", - "resolved": "https://registry.npmjs.org/object-inspect/-/object-inspect-1.12.2.tgz", - "integrity": "sha512-z+cPxW0QGUp0mcqcsgQyLVRDoXFQbXOwBaqyF7VIgI4TWNQsDHrBpUQslRmIfAoYWdYzs6UlKJtB2XJpTaNSpQ==", + "version": "1.13.2", + "resolved": "https://registry.npmjs.org/object-inspect/-/object-inspect-1.13.2.tgz", + "integrity": "sha512-IRZSRuzJiynemAXPYtPe5BoI/RESNYR7TYm50MC5Mqbd3Jmw5y790sErYw3V6SryFJD64b74qQQs9wn5Bg/k3g==", + "engines": { + "node": ">= 0.4" + }, "funding": { "url": "https://github.com/sponsors/ljharb" } @@ -1985,9 +2067,9 @@ } }, "node_modules/path-to-regexp": { - "version": "0.1.7", - "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.7.tgz", - "integrity": "sha512-5DFkuoqlv1uYQKxy8omFBeJPQcdoE07Kv2sferDCrAq1ohOU+MSDswDIbnx3YAM60qIOnYa53wBhXW0EbMonrQ==" + "version": "0.1.10", + "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.10.tgz", + "integrity": "sha512-7lf7qcQidTku0Gu3YDPc8DJ1q7OOucfa/BSsIwjuh56VU7katFvuM8hULfkwB3Fns/rsVF7PwPKVw1sl5KQS9w==" }, "node_modules/pend": { "version": "1.2.0", @@ -2074,11 +2156,11 @@ } }, "node_modules/qs": { - "version": "6.11.0", - "resolved": "https://registry.npmjs.org/qs/-/qs-6.11.0.tgz", - "integrity": "sha512-MvjoMCJwEarSbUYk5O+nmoSzSutSsTwF85zcHPQ9OrlFoZOYIjaqBAJIqIXjptyD5vThxGq52Xu/MaJzRkIk4Q==", + "version": "6.13.0", + "resolved": "https://registry.npmjs.org/qs/-/qs-6.13.0.tgz", + "integrity": "sha512-+38qI9SOr8tfZ4QmJNplMUxqjbe7LKvvZgWdExBOmd+egZTtjLB67Gu0HRX3u/XOq7UU2Nx6nsjvS16Z9uwfpg==", "dependencies": { - "side-channel": "^1.0.4" + "side-channel": "^1.0.6" }, "engines": { "node": ">=0.6" @@ -2207,9 +2289,9 @@ } }, "node_modules/send": { - "version": "0.18.0", - "resolved": "https://registry.npmjs.org/send/-/send-0.18.0.tgz", - "integrity": "sha512-qqWzuOjSFOuqPjFe4NOsMLafToQQwBSOEpS+FwEt3A2V3vKubTquT3vmLTQpFgMXp8AlFWFuP1qKaJZOtPpVXg==", + "version": "0.19.0", + "resolved": "https://registry.npmjs.org/send/-/send-0.19.0.tgz", + "integrity": "sha512-dW41u5VfLXu8SJh5bwRmyYUbAoSB3c9uQh6L8h/KtsFREPWpbX1lrljJo186Jc4nmci/sGUZ9a0a0J2zgfq2hw==", "dependencies": { "debug": "2.6.9", "depd": "2.0.0", @@ -2229,25 +2311,49 @@ "node": ">= 0.8.0" } }, + "node_modules/send/node_modules/encodeurl": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", + "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==", + "engines": { + "node": ">= 0.8" + } + }, "node_modules/send/node_modules/ms": { "version": "2.1.3", "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.3.tgz", "integrity": "sha512-6FlzubTLZG3J2a/NVCAleEhjzq5oxgHyaCU9yYXvcLsvoVaHJq/s5xXI6/XXP6tz7R9xAOtHnSO/tXtF3WRTlA==" }, "node_modules/serve-static": { - "version": "1.15.0", - "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.15.0.tgz", - "integrity": "sha512-XGuRDNjXUijsUL0vl6nSD7cwURuzEgglbOaFuZM9g3kwDXOWVTck0jLzjPzGD+TazWbboZYu52/9/XPdUgne9g==", + "version": "1.16.2", + "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.16.2.tgz", + "integrity": "sha512-VqpjJZKadQB/PEbEwvFdO43Ax5dFBZ2UECszz8bQ7pi7wt//PWe1P6MN7eCnjsatYtBT6EuiClbjSWP2WrIoTw==", "dependencies": { - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "parseurl": "~1.3.3", - "send": "0.18.0" + "send": "0.19.0" }, "engines": { "node": ">= 0.8.0" } }, + "node_modules/set-function-length": { + "version": "1.2.2", + "resolved": "https://registry.npmjs.org/set-function-length/-/set-function-length-1.2.2.tgz", + "integrity": "sha512-pgRc4hJ4/sNjWCSS9AmnS40x3bNMDTknHgL5UaMBTMyJnU90EgWh1Rz+MC9eFu4BuN/UwZjKQuY/1v3rM7HMfg==", + "dependencies": { + "define-data-property": "^1.1.4", + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "get-intrinsic": "^1.2.4", + "gopd": "^1.0.1", + "has-property-descriptors": "^1.0.2" + }, + "engines": { + "node": ">= 0.4" + } + }, "node_modules/setprototypeof": { "version": "1.2.0", "resolved": "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.2.0.tgz", @@ -2275,13 +2381,17 @@ } }, "node_modules/side-channel": { - "version": "1.0.4", - "resolved": "https://registry.npmjs.org/side-channel/-/side-channel-1.0.4.tgz", - "integrity": "sha512-q5XPytqFEIKHkGdiMIrY10mvLRvnQh42/+GoBlFW3b2LXLE2xxJpZFdm94we0BaoV3RwJyGqg5wS7epxTv0Zvw==", + "version": "1.0.6", + "resolved": "https://registry.npmjs.org/side-channel/-/side-channel-1.0.6.tgz", + "integrity": "sha512-fDW/EZ6Q9RiO8eFG8Hj+7u/oW+XrPTIChwCOM2+th2A6OblDtYYIpve9m+KvI9Z4C9qSEXlaGR6bTEYHReuglA==", "dependencies": { - "call-bind": "^1.0.0", - "get-intrinsic": "^1.0.2", - "object-inspect": "^1.9.0" + "call-bind": "^1.0.7", + "es-errors": "^1.3.0", + "get-intrinsic": "^1.2.4", + "object-inspect": "^1.13.1" + }, + "engines": { + "node": ">= 0.4" }, "funding": { "url": "https://github.com/sponsors/ljharb" @@ -2961,9 +3071,9 @@ "dev": true }, "body-parser": { - "version": "1.20.2", - "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.2.tgz", - "integrity": "sha512-ml9pReCu3M61kGlqoTm2umSXTlRTuGTx0bfYj+uIUKKYycG5NtSbeetV3faSU6R7ajOPw0g/J1PvK4qNy7s5bA==", + "version": "1.20.3", + "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.3.tgz", + "integrity": "sha512-7rAxByjUMqQ3/bHJy7D6OGXvx/MMc4IqBn/X0fcM1QUcAItpZrBEYhWGem+tzXH90c+G01ypMcYJBO9Y30203g==", "requires": { "bytes": "3.1.2", "content-type": "~1.0.5", @@ -2973,7 +3083,7 @@ "http-errors": "2.0.0", "iconv-lite": "0.4.24", "on-finished": "2.4.1", - "qs": "6.11.0", + "qs": "6.13.0", "raw-body": "2.5.2", "type-is": "~1.6.18", "unpipe": "1.0.0" @@ -3029,12 +3139,15 @@ "dev": true }, "call-bind": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz", - "integrity": "sha512-7O+FbCihrB5WGbFYesctwmTKae6rOiIzmz1icreWJ+0aA7LJfuqhEso2T9ncpcFtzMQtzXf2QGGueWJGTYsqrA==", + "version": "1.0.7", + "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.7.tgz", + "integrity": "sha512-GHTSNSYICQ7scH7sZ+M2rFopRoLh8t2bLSW6BbgrtLsahOIB5iyAVJf9GjWK3cYTDaMj4XdBpM1cA6pIS0Kv2w==", "requires": { - "function-bind": "^1.1.1", - "get-intrinsic": "^1.0.2" + "es-define-property": "^1.0.0", + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "get-intrinsic": "^1.2.4", + "set-function-length": "^1.2.1" } }, "caseless": { @@ -3319,6 +3432,16 @@ "ms": "2.0.0" } }, + "define-data-property": { + "version": "1.1.4", + "resolved": "https://registry.npmjs.org/define-data-property/-/define-data-property-1.1.4.tgz", + "integrity": "sha512-rBMvIzlpA8v6E+SJZoo++HAYqsLrkg7MSfIinMPFhmkorw7X+dOXVJQs+QT69zGkzMyfDnIMN2Wid1+NbL3T+A==", + "requires": { + "es-define-property": "^1.0.0", + "es-errors": "^1.3.0", + "gopd": "^1.0.1" + } + }, "delayed-stream": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/delayed-stream/-/delayed-stream-1.0.0.tgz", @@ -3362,9 +3485,9 @@ "dev": true }, "encodeurl": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", - "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==" + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-2.0.0.tgz", + "integrity": "sha512-Q0n9HRi4m6JuGIV1eFlmvJB7ZEVxu93IrMyiMsGC0lrMJMWzRgx6WGquyfQgZVb31vhGgXnfmPNNXmxnOkRBrg==" }, "end-of-stream": { "version": "1.4.4", @@ -3384,6 +3507,19 @@ "ansi-colors": "^4.1.1" } }, + "es-define-property": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/es-define-property/-/es-define-property-1.0.0.tgz", + "integrity": "sha512-jxayLKShrEqqzJ0eumQbVhTYQM27CfT1T35+gCgDFoL82JLsXqTJ76zv6A0YLOgEnLUMvLzsDsGIrl8NFpT2gQ==", + "requires": { + "get-intrinsic": "^1.2.4" + } + }, + "es-errors": { + "version": "1.3.0", + "resolved": "https://registry.npmjs.org/es-errors/-/es-errors-1.3.0.tgz", + "integrity": "sha512-Zf5H2Kxt2xjTvbJvP2ZWLEICxA6j+hAmMzIlypy4xcBg1vKVnx89Wy0GbS+kf5cwCVFFzdCFh2XSCFNULS6csw==" + }, "escape-html": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/escape-html/-/escape-html-1.0.3.tgz", @@ -3433,36 +3569,36 @@ } }, "express": { - "version": "4.19.2", - "resolved": "https://registry.npmjs.org/express/-/express-4.19.2.tgz", - "integrity": "sha512-5T6nhjsT+EOMzuck8JjBHARTHfMht0POzlA60WV2pMD3gyXw2LZnZ+ueGdNxG+0calOJcWKbpFcuzLZ91YWq9Q==", + "version": "4.21.0", + "resolved": "https://registry.npmjs.org/express/-/express-4.21.0.tgz", + "integrity": "sha512-VqcNGcj/Id5ZT1LZ/cfihi3ttTn+NJmkli2eZADigjq29qTlWi/hAQ43t/VLPq8+UX06FCEx3ByOYet6ZFblng==", "requires": { "accepts": "~1.3.8", "array-flatten": "1.1.1", - "body-parser": "1.20.2", + "body-parser": "1.20.3", "content-disposition": "0.5.4", "content-type": "~1.0.4", "cookie": "0.6.0", "cookie-signature": "1.0.6", "debug": "2.6.9", "depd": "2.0.0", - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "etag": "~1.8.1", - "finalhandler": "1.2.0", + "finalhandler": "1.3.1", "fresh": "0.5.2", "http-errors": "2.0.0", - "merge-descriptors": "1.0.1", + "merge-descriptors": "1.0.3", "methods": "~1.1.2", "on-finished": "2.4.1", "parseurl": "~1.3.3", - "path-to-regexp": "0.1.7", + "path-to-regexp": "0.1.10", "proxy-addr": "~2.0.7", - "qs": "6.11.0", + "qs": "6.13.0", "range-parser": "~1.2.1", "safe-buffer": "5.2.1", - "send": "0.18.0", - "serve-static": "1.15.0", + "send": "0.19.0", + "serve-static": "1.16.2", "setprototypeof": "1.2.0", "statuses": "2.0.1", "type-is": "~1.6.18", @@ -3537,12 +3673,12 @@ } }, "finalhandler": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/finalhandler/-/finalhandler-1.2.0.tgz", - "integrity": "sha512-5uXcUVftlQMFnWC9qu/svkWv3GTd2PfUhK/3PLkYNAe7FbqJMt3515HaxE6eRL74GdsriiwujiawdaB1BpEISg==", + "version": "1.3.1", + "resolved": "https://registry.npmjs.org/finalhandler/-/finalhandler-1.3.1.tgz", + "integrity": "sha512-6BN9trH7bp3qvnrRyzsBz+g3lZxTNZTbVO2EV1CS0WIcDbawYVdYvGflME/9QP0h0pYlCDBCTjYa9nZzMDpyxQ==", "requires": { "debug": "2.6.9", - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "on-finished": "2.4.1", "parseurl": "~1.3.3", @@ -3601,18 +3737,20 @@ "dev": true }, "function-bind": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/function-bind/-/function-bind-1.1.1.tgz", - "integrity": "sha512-yIovAzMX49sF8Yl58fSCWJ5svSLuaibPxXQJFLmBObTuCr0Mf1KiPopGM9NiFjiYBCbfaa2Fh6breQ6ANVTI0A==" + "version": "1.1.2", + "resolved": "https://registry.npmjs.org/function-bind/-/function-bind-1.1.2.tgz", + "integrity": "sha512-7XHNxH7qX9xG5mIwxkhumTox/MIRNcOgDrxWsMt2pAr23WHp6MrRlN7FBSFpCpr+oVO0F744iUgR82nJMfG2SA==" }, "get-intrinsic": { - "version": "1.1.3", - "resolved": "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.1.3.tgz", - "integrity": "sha512-QJVz1Tj7MS099PevUG5jvnt9tSkXN8K14dxQlikJuPt4uD9hHAHjLyLBiLR5zELelBdD9QNRAXZzsJx0WaDL9A==", + "version": "1.2.4", + "resolved": "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.2.4.tgz", + "integrity": "sha512-5uYhsJH8VJBTv7oslg4BznJYhDoRI6waYCxMmCdnTrcCrHA/fCFKoTFz2JKKE0HdDFUF7/oQuhzumXJK7paBRQ==", "requires": { - "function-bind": "^1.1.1", - "has": "^1.0.3", - "has-symbols": "^1.0.3" + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "has-proto": "^1.0.1", + "has-symbols": "^1.0.3", + "hasown": "^2.0.0" } }, "get-stream": { @@ -3665,31 +3803,52 @@ "ini": "2.0.0" } }, + "gopd": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/gopd/-/gopd-1.0.1.tgz", + "integrity": "sha512-d65bNlIadxvpb/A2abVdlqKqV563juRnZ1Wtk6s1sIR8uNsXR70xqIzVqxVf1eTqDunwT2MkczEeaezCKTZhwA==", + "requires": { + "get-intrinsic": "^1.1.3" + } + }, "graceful-fs": { "version": "4.2.10", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.10.tgz", "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA==", "dev": true }, - "has": { - "version": "1.0.3", - "resolved": "https://registry.npmjs.org/has/-/has-1.0.3.tgz", - "integrity": "sha512-f2dvO0VU6Oej7RkWJGrehjbzMAjFp5/VKPp5tTpWIV4JHHZK1/BxbFRtf/siA2SWTe09caDmVtYYzWEIbBS4zw==", - "requires": { - "function-bind": "^1.1.1" - } - }, "has-flag": { "version": "4.0.0", "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-4.0.0.tgz", "integrity": "sha512-EykJT/Q1KjTWctppgIAgfSO0tKVuZUjhgMr17kqTumMl6Afv3EISleU7qZUzoXDFTAHTDC4NOoG/ZxU3EvlMPQ==", "dev": true }, + "has-property-descriptors": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/has-property-descriptors/-/has-property-descriptors-1.0.2.tgz", + "integrity": "sha512-55JNKuIW+vq4Ke1BjOTjM2YctQIvCT7GFzHwmfZPGo5wnrgkid0YQtnAleFSqumZm4az3n2BS+erby5ipJdgrg==", + "requires": { + "es-define-property": "^1.0.0" + } + }, + "has-proto": { + "version": "1.0.3", + "resolved": "https://registry.npmjs.org/has-proto/-/has-proto-1.0.3.tgz", + "integrity": "sha512-SJ1amZAJUiZS+PhsVLf5tGydlaVB8EdFpaSO4gmiUKUOxk8qzn5AIy4ZeJUmh22znIdk/uMAUT2pl3FxzVUH+Q==" + }, "has-symbols": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/has-symbols/-/has-symbols-1.0.3.tgz", "integrity": "sha512-l3LCuF6MgDNwTDKkdYGEihYjt5pRPbEg46rtlmnSPlUbgmB8LOIrKJbYYFBSbnPaJexMKtiPO8hmeRjRz2Td+A==" }, + "hasown": { + "version": "2.0.2", + "resolved": "https://registry.npmjs.org/hasown/-/hasown-2.0.2.tgz", + "integrity": "sha512-0hJU9SCPvmMzIBdZFqNPXWa6dqh7WdH0cII9y+CyS8rG3nL48Bclra9HmKhVVUHyPWNH5Y7xDwAB7bfgSjkUMQ==", + "requires": { + "function-bind": "^1.1.2" + } + }, "http": { "version": "0.0.1-security", "resolved": "https://registry.npmjs.org/http/-/http-0.0.1-security.tgz", @@ -3718,11 +3877,6 @@ "sshpk": "^1.14.1" } }, - "https": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/https/-/https-1.0.0.tgz", - "integrity": "sha512-4EC57ddXrkaF0x83Oj8sM6SLQHAWXw90Skqu2M4AEWENZ3F02dFJE/GARA8igO79tcgYqGrD7ae4f5L3um2lgg==" - }, "human-signals": { "version": "1.1.1", "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-1.1.1.tgz", @@ -3982,9 +4136,9 @@ "optional": true }, "merge-descriptors": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/merge-descriptors/-/merge-descriptors-1.0.1.tgz", - "integrity": "sha512-cCi6g3/Zr1iqQi6ySbseM1Xvooa98N0w31jzUYrXPX2xqObmFGHJ0tQ5u74H3mVh7wLouTseZyYIq39g8cNp1w==" + "version": "1.0.3", + "resolved": "https://registry.npmjs.org/merge-descriptors/-/merge-descriptors-1.0.3.tgz", + "integrity": "sha512-gaNvAS7TZ897/rVaZ0nMtAyxNyi/pdbjbAwUpFQpN70GqnVfOiXpeUUMKRBmzXaSQ8DdTX4/0ms62r2K+hE6mQ==" }, "merge-stream": { "version": "2.0.0", @@ -4076,9 +4230,9 @@ } }, "object-inspect": { - "version": "1.12.2", - "resolved": "https://registry.npmjs.org/object-inspect/-/object-inspect-1.12.2.tgz", - "integrity": "sha512-z+cPxW0QGUp0mcqcsgQyLVRDoXFQbXOwBaqyF7VIgI4TWNQsDHrBpUQslRmIfAoYWdYzs6UlKJtB2XJpTaNSpQ==" + "version": "1.13.2", + "resolved": "https://registry.npmjs.org/object-inspect/-/object-inspect-1.13.2.tgz", + "integrity": "sha512-IRZSRuzJiynemAXPYtPe5BoI/RESNYR7TYm50MC5Mqbd3Jmw5y790sErYw3V6SryFJD64b74qQQs9wn5Bg/k3g==" }, "on-finished": { "version": "2.4.1", @@ -4144,9 +4298,9 @@ "dev": true }, "path-to-regexp": { - "version": "0.1.7", - "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.7.tgz", - "integrity": "sha512-5DFkuoqlv1uYQKxy8omFBeJPQcdoE07Kv2sferDCrAq1ohOU+MSDswDIbnx3YAM60qIOnYa53wBhXW0EbMonrQ==" + "version": "0.1.10", + "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.10.tgz", + "integrity": "sha512-7lf7qcQidTku0Gu3YDPc8DJ1q7OOucfa/BSsIwjuh56VU7katFvuM8hULfkwB3Fns/rsVF7PwPKVw1sl5KQS9w==" }, "pend": { "version": "1.2.0", @@ -4215,11 +4369,11 @@ "integrity": "sha512-XRsRjdf+j5ml+y/6GKHPZbrF/8p2Yga0JPtdqTIY2Xe5ohJPD9saDJJLPvp9+NSBprVvevdXZybnj2cv8OEd0A==" }, "qs": { - "version": "6.11.0", - "resolved": "https://registry.npmjs.org/qs/-/qs-6.11.0.tgz", - "integrity": "sha512-MvjoMCJwEarSbUYk5O+nmoSzSutSsTwF85zcHPQ9OrlFoZOYIjaqBAJIqIXjptyD5vThxGq52Xu/MaJzRkIk4Q==", + "version": "6.13.0", + "resolved": "https://registry.npmjs.org/qs/-/qs-6.13.0.tgz", + "integrity": "sha512-+38qI9SOr8tfZ4QmJNplMUxqjbe7LKvvZgWdExBOmd+egZTtjLB67Gu0HRX3u/XOq7UU2Nx6nsjvS16Z9uwfpg==", "requires": { - "side-channel": "^1.0.4" + "side-channel": "^1.0.6" } }, "querystringify": { @@ -4320,9 +4474,9 @@ } }, "send": { - "version": "0.18.0", - "resolved": "https://registry.npmjs.org/send/-/send-0.18.0.tgz", - "integrity": "sha512-qqWzuOjSFOuqPjFe4NOsMLafToQQwBSOEpS+FwEt3A2V3vKubTquT3vmLTQpFgMXp8AlFWFuP1qKaJZOtPpVXg==", + "version": "0.19.0", + "resolved": "https://registry.npmjs.org/send/-/send-0.19.0.tgz", + "integrity": "sha512-dW41u5VfLXu8SJh5bwRmyYUbAoSB3c9uQh6L8h/KtsFREPWpbX1lrljJo186Jc4nmci/sGUZ9a0a0J2zgfq2hw==", "requires": { "debug": "2.6.9", "depd": "2.0.0", @@ -4339,6 +4493,11 @@ "statuses": "2.0.1" }, "dependencies": { + "encodeurl": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", + "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==" + }, "ms": { "version": "2.1.3", "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.3.tgz", @@ -4347,14 +4506,27 @@ } }, "serve-static": { - "version": "1.15.0", - "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.15.0.tgz", - "integrity": "sha512-XGuRDNjXUijsUL0vl6nSD7cwURuzEgglbOaFuZM9g3kwDXOWVTck0jLzjPzGD+TazWbboZYu52/9/XPdUgne9g==", + "version": "1.16.2", + "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.16.2.tgz", + "integrity": "sha512-VqpjJZKadQB/PEbEwvFdO43Ax5dFBZ2UECszz8bQ7pi7wt//PWe1P6MN7eCnjsatYtBT6EuiClbjSWP2WrIoTw==", "requires": { - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "parseurl": "~1.3.3", - "send": "0.18.0" + "send": "0.19.0" + } + }, + "set-function-length": { + "version": "1.2.2", + "resolved": "https://registry.npmjs.org/set-function-length/-/set-function-length-1.2.2.tgz", + "integrity": "sha512-pgRc4hJ4/sNjWCSS9AmnS40x3bNMDTknHgL5UaMBTMyJnU90EgWh1Rz+MC9eFu4BuN/UwZjKQuY/1v3rM7HMfg==", + "requires": { + "define-data-property": "^1.1.4", + "es-errors": "^1.3.0", + "function-bind": "^1.1.2", + "get-intrinsic": "^1.2.4", + "gopd": "^1.0.1", + "has-property-descriptors": "^1.0.2" } }, "setprototypeof": { @@ -4378,13 +4550,14 @@ "dev": true }, "side-channel": { - "version": "1.0.4", - "resolved": "https://registry.npmjs.org/side-channel/-/side-channel-1.0.4.tgz", - "integrity": "sha512-q5XPytqFEIKHkGdiMIrY10mvLRvnQh42/+GoBlFW3b2LXLE2xxJpZFdm94we0BaoV3RwJyGqg5wS7epxTv0Zvw==", + "version": "1.0.6", + "resolved": "https://registry.npmjs.org/side-channel/-/side-channel-1.0.6.tgz", + "integrity": "sha512-fDW/EZ6Q9RiO8eFG8Hj+7u/oW+XrPTIChwCOM2+th2A6OblDtYYIpve9m+KvI9Z4C9qSEXlaGR6bTEYHReuglA==", "requires": { - "call-bind": "^1.0.0", - "get-intrinsic": "^1.0.2", - "object-inspect": "^1.9.0" + "call-bind": "^1.0.7", + "es-errors": "^1.3.0", + "get-intrinsic": "^1.2.4", + "object-inspect": "^1.13.1" } }, "signal-exit": { diff --git a/package.json b/package.json index f996955..00a2671 100644 --- a/package.json +++ b/package.json @@ -32,7 +32,7 @@ "dependencies": { "compression": "^1.7.4", "dotenv": "^16.0.1", - "express": "^4.19.2", + "express": "^4.21.0", "fs": "^0.0.1-security", "http": "^0.0.1-security", "mongodb": "^5.8.0"